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| author |   David Seifert <soap@gentoo.org> | 2018-10-28 21:24:37 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2018-10-28 21:24:37 +0100 |
| commit | 18d496c1b4022e892aae9fcf3350b302b34357ed (patch) | |
| tree | 44e751b790c150f7d3840939cdce8952b402800e /sci-biology/samtools | |
| parent | sci-libs/htslib: Version bump to 1.9 (diff) | |
| download | gentoo-18d496c1b4022e892aae9fcf3350b302b34357ed.tar.gz gentoo-18d496c1b4022e892aae9fcf3350b302b34357ed.tar.bz2 gentoo-18d496c1b4022e892aae9fcf3350b302b34357ed.zip | |
sci-biology/samtools: Version bump to 1.9
Bug: https://bugs.gentoo.org/647714
Signed-off-by: David Seifert <soap@gentoo.org>
Package-Manager: Portage-2.3.50, Repoman-2.3.11
Diffstat (limited to 'sci-biology/samtools')
| -rw-r--r-- | sci-biology/samtools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-1.9.ebuild | 52 |
2 files changed, 53 insertions, 0 deletions
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index 8269a052050d..7ce21379a95d 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,2 +1,3 @@ DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e0c9f25013ed0d039bfe8ef61108600d917f8c9d356e98aca632795b4eb0f01ea1b54526a652577fb74a38a433c2 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5 DIST samtools-1.5.tar.bz2 4190142 BLAKE2B 1d3478f9adf76925a3721e145795ce4a4caf580244f5ba5bc1ddd14d1b13c723c6fddc24cdadf0a23ca5dcd7007a9985f54e7532cb15d5d9433b1164f5a22023 SHA512 ff3e39ba867ecbd88f3363b038508c1557e349ea4223483f8f4ecb17ff8864fb53cd193bc2059a147e30f07395bbf53c8518d0f70219e454375c8bffe56e3059 +DIST samtools-1.9.tar.bz2 4440405 BLAKE2B 409265fed9ff3fcd09096c968224499750da69324eeded754e367430c0f53f9246ccc9a31e166f13ea7bc767fefab499bcfda4d008d5ac82971984c67b533aff SHA512 6c8207754615ae8dad84b278f93e7d57eb40b818efb80f6aff6aba22fde5772247724e86596e765791e3175ffbb683393dd3ddfe7681c73eef4eb4f2342bf68f diff --git a/sci-biology/samtools/samtools-1.9.ebuild b/sci-biology/samtools/samtools-1.9.ebuild new file mode 100644 index 000000000000..bdcd115aafee --- /dev/null +++ b/sci-biology/samtools/samtools-1.9.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2018 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python2_7 ) + +inherit autotools python-single-r1 toolchain-funcs + +DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" +HOMEPAGE="http://www.htslib.org/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" +IUSE="examples" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-lang/perl + =sci-libs/htslib-${PV}* + sys-libs/ncurses:0= + sys-libs/zlib:= + ${PYTHON_DEPS}" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +src_prepare() { + default + + python_fix_shebang misc/varfilter.py + + # remove bundled htslib + rm -r htslib-* || die + + eautoreconf +} + +src_test() { + local -x LD_LIBRARY_PATH="${S}" + default +} + +src_install() { + default + + if use examples; then + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples + fi +} |