sci-biology/seaview: Version Bump

fixes compilation problems with newer fltk

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556750

Package-Manager: portage-2.2.25
Signed-off-by: Justin Lecher <jlec@gentoo.org>

2 files changed, 78 insertions, 0 deletions

diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index 6bb12c484533..fc48e74418df 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -1 +1,2 @@
 DIST seaview_4.3.5.tar.gz 309530 SHA256 38050d6792eb799d61e5e849f76971a9c7d45f467e5c04fbc4363062d8e7100d SHA512 b20c018da9a29d79fe0393fed5d29117729492ea8f36e72d4aeb98044a3de4a13331bd29e76ca552a08f6da764e57e69f9fb0325fc031551514d7a54b56c849a WHIRLPOOL 82fc7324bf1d934d69712629808d6b4178a5f2cdcf25351fb2fe2784f9cea0c1ec0aaaba7a3a08c84795108eb049394ceaab052af8cc0efbb0975064fa4e80e0
+DIST seaview_4.5.4.tar.gz 420608 SHA256 f4569ad7f1d8de2b141175b1122f036cb45f55f8e9e59e42d6026668e091e7ed SHA512 a8a2e49a13f87ae4279311068147169b1e17874e9ce5787003b854c7271efc7a128db6916bb883a9b7b0b90f855fe40d83c77e9fd9f5751464e04346b9923301 WHIRLPOOL c52f7ac9d7d4c85d7670bdb3a87c9ba94904b25e11583ad8abf3de9f43fa3967d64b96d447ebb5ebe614053c4de64828d1c3c5763c64dc269e78fb3c49151886
diff --git a/sci-biology/seaview/seaview-4.5.4.ebuild b/sci-biology/seaview/seaview-4.5.4.ebuild
new file mode 100644
index 000000000000..16459f31e3a8
--- /dev/null
+++ b/sci-biology/seaview/seaview-4.5.4.ebuild
@@ -0,0 +1,77 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils multilib toolchain-funcs
+
+DESCRIPTION="A graphical multiple sequence alignment editor"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
+SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE="+xft"
+
+CDEPEND="
+	sys-libs/zlib
+	x11-libs/fltk:1
+	x11-libs/libX11
+	xft? (
+		x11-libs/libXft
+		x11-libs/fltk:1[xft] )"
+RDEPEND="${CDEPEND}
+	sci-biology/clustalw
+	|| ( sci-libs/libmuscle sci-biology/muscle )
+	sci-biology/phyml"
+DEPEND="${CDEPEND}
+	virtual/pkgconfig"
+
+S="${WORKDIR}/${PN}"
+
+src_prepare() {
+	# respect CXXFLAGS (package uses them as CFLAGS)
+	sed \
+		-e "s:^CC.*:CC = $(tc-getCC):" \
+		-e "s:^CXX.*:CXX = $(tc-getCXX):" \
+		-e "s:\$(OPT):${CXXFLAGS}:" \
+		-e "s:^OPT:#OPT:" \
+		-e "s:^FLTK = .*$:FLTK = ${EPREFIX}/usr/include/fltk-1:" \
+		-e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cflags):" \
+		-e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \
+		-e "s:^USE_XFT:#USE_XFT:" \
+		-e "s:^#HELPFILE:HELPFILE:" \
+		-e "s:/usr/share/doc/seaview/seaview.htm:${EPREFIX}/usr/share/seaview/seaview.htm:" \
+		-e "s:^#PHYMLNAME:PHYMLNAME:" \
+		-e 's:-lXinerama::g' \
+		-e 's:-lpng::g' \
+		-e 's:-ljpeg::g' \
+		-e 's:-lfontconfig::g' \
+		-i Makefile || die "sed failed while editing Makefile"
+
+	if use xft; then
+		sed \
+			-e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $($(tc-getPKG_CONFIG) --cflags xft):" \
+			-e "s:-lXft:$($(tc-getPKG_CONFIG) --libs xft):" \
+			-i Makefile || die "sed failed while editing Makefile to enable xft"
+	else
+		sed -i -e "s:-lXft::" Makefile || die
+	fi
+}
+
+src_install() {
+	dobin seaview
+
+	# /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile
+	insinto /usr/share/seaview
+	doins example.nxs seaview.html
+
+	insinto /usr/share/seaview/images
+	doins seaview.xpm
+
+	make_desktop_entry seaview Seaview
+
+	doman seaview.1
+}