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| author |   David Seifert <soap@gentoo.org> | 2023-03-30 13:11:00 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2023-03-30 13:11:00 +0200 |
| commit | 44c2c0b7d6006ee664863ccaf60bbde18a7a2153 (patch) | |
| tree | e4d01c4c8c5e16dc1955ef50c43caa355a1bc11f /sci-biology | |
| parent | sci-biology/samtools: add 1.17 (diff) | |
| download | gentoo-44c2c0b7d6006ee664863ccaf60bbde18a7a2153.tar.gz gentoo-44c2c0b7d6006ee664863ccaf60bbde18a7a2153.tar.bz2 gentoo-44c2c0b7d6006ee664863ccaf60bbde18a7a2153.zip | |
sci-biology/bcftools: add 1.17
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bcftools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/bcftools/bcftools-1.17.ebuild | 42 |
2 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index 2302cb589b4f..8d5aa1eec079 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1 +1,2 @@ DIST bcftools-1.16.tar.bz2 7325862 BLAKE2B 0e1240448d4efb352d3d0cd83decd286f7544fff3676f0a5cca51dec9c445c47c37ac24a3317aa7b41182c576e7e57dba460fc98aca069dc2f8fe0625c0b0f06 SHA512 998d5ac941f73798c35dd1db7ac7aba9067f275bd3055728aabfd8edd9f40484130df1fb57621d1a762a57b28ffcac358570915c341d420ae6f12bd17f7651a3 +DIST bcftools-1.17.tar.bz2 7538043 BLAKE2B 82f65d53ebea0527ff000329f158ebdb1d603e04841a096cf8ca0434e7a5694ab43da7959ee10e9cb29328bf82301c03200e1203578a74e2e1118856b2641502 SHA512 39ae44a682e626a5261900e9412170a269e460b559d6607db697e6a12b1e512ffb3bdeb3486413e19b8adca26a8ccbb2bd4af24459decb74592c54473d2c6a68 diff --git a/sci-biology/bcftools/bcftools-1.17.ebuild b/sci-biology/bcftools/bcftools-1.17.ebuild new file mode 100644 index 000000000000..6adee705bb46 --- /dev/null +++ b/sci-biology/bcftools/bcftools-1.17.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{9..11} ) + +inherit python-single-r1 + +DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" +HOMEPAGE="http://www.htslib.org" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-lang/perl + $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]') + =sci-libs/htslib-$(ver_cut 1-2)*:= + sys-libs/zlib + ${PYTHON_DEPS}" +DEPEND="${RDEPEND}" +BDEPEND="${PYTHON_DEPS}" + +src_prepare() { + default + + python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py + + # remove bundled htslib + rm -r htslib-* || die +} + +src_configure() { + econf \ + --disable-bcftools-plugins \ + --disable-libgsl \ + --with-htslib=system +} |