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authorPacho Ramos <pacho@gentoo.org>2024-07-31 09:44:31 +0200
committerPacho Ramos <pacho@gentoo.org>2024-07-31 11:23:07 +0200
commit1e34d12ef2f2712ea85969bbb6b6908b9a9c8886 (patch)
treef5df3fb2e8870bb761819c509435e81f48f24557 /sci-libs
parentsci-libs/pastix: support py3.12 (diff)
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sci-libs/pastix: drop 5.2.3
Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Diffstat (limited to 'sci-libs')
-rw-r--r--sci-libs/pastix/Manifest1
-rw-r--r--sci-libs/pastix/files/pastix-5.2.3-MPI-3.0.patch139
-rw-r--r--sci-libs/pastix/pastix-5.2.3.ebuild118
3 files changed, 0 insertions, 258 deletions
diff --git a/sci-libs/pastix/Manifest b/sci-libs/pastix/Manifest
index 67a373f23211..2d332d8ba962 100644
--- a/sci-libs/pastix/Manifest
+++ b/sci-libs/pastix/Manifest
@@ -1,2 +1 @@
DIST pastix-6.0.3.tar.gz 1793579 BLAKE2B 9e0ee71c80b2c93c6762c1a824b2e1262fd1a9f406194fb99eeecbfc172cf82f497d23a541b56c44e5487c3c228cab781f47f683ee04c6cdf426da6126750a69 SHA512 5bf8dfa6ed02ee7e236c63e21c80bd45af807b465b21a8c0520b1328e179095f1416f925be9f8b5ec0e8078ca9bc4398bf0d091fdc8e9ea51b9af12a06d9a544
-DIST pastix_5.2.3.tar.bz2 2246903 BLAKE2B b13cb31bbc2aeb122e932b2a934598ec975a55f327483bf1383280976584858426c56982f6980b52f32f04e05c6e6c8de1cf35e378e61a7be9dddb705b1c033a SHA512 69acffac1be8c756886783c2a6307269ab4d14abfc4a77268b3d14995e53b16084c298446812484233d9d52c317490d6ad67788166adf367075e6c8442147b95
diff --git a/sci-libs/pastix/files/pastix-5.2.3-MPI-3.0.patch b/sci-libs/pastix/files/pastix-5.2.3-MPI-3.0.patch
deleted file mode 100644
index d86ec5b78416..000000000000
--- a/sci-libs/pastix/files/pastix-5.2.3-MPI-3.0.patch
+++ /dev/null
@@ -1,139 +0,0 @@
-https://bugs.gentoo.org/692742
-rename MPI 1.0 to 3.0+ functions:
-- MPI_Address -> MPI_Get_address
-- MPI_Type_struct -> MPI_Type_create_struct
-
---- a/common/src/nompi.h
-+++ b/common/src/nompi.h
-@@ -127,9 +127,9 @@
- #define MPI_Start(request)
- #define MPI_Startall(count, array_of_requests)
- #define MPI_Type_contiguous(count, oldtype, newtype)
--#define MPI_Type_struct(count, array_of_blocklengths, array_of_displacement, \
-+#define MPI_Type_create_struct(count, array_of_blocklengths, array_of_displacement, \
- oldtype, newtype)
--#define MPI_Address(location, newtype)
-+#define MPI_Get_address(location, newtype)
- #define MPI_Type_commit(datatype)
- #define MPI_Type_free(datatype)
- #define MPI_Request_free(request)
---- a/sopalin/src/sopalin_sendrecv.c
-+++ b/sopalin/src/sopalin_sendrecv.c
-@@ -1300,10 +1300,10 @@
- thread_data->gtaboffs[packnbr] = FANIN_INFOTAB(t);
- thread_data->gtaboffs[packnbr+1] = FANIN_COEFTAB(t);
- #else /* NO_MPI_TYPE */
-- CALL_MPI MPI_Address(FANIN_INFOTAB(t),&(thread_data->gtaboffs[packnbr]));
-- TEST_MPI("MPI_Address");
-- CALL_MPI MPI_Address(FANIN_COEFTAB(t),&(thread_data->gtaboffs[packnbr+1]));
-- TEST_MPI("MPI_Address");
-+ CALL_MPI MPI_Get_address(FANIN_INFOTAB(t),&(thread_data->gtaboffs[packnbr]));
-+ TEST_MPI("MPI_Get_address");
-+ CALL_MPI MPI_Get_address(FANIN_COEFTAB(t),&(thread_data->gtaboffs[packnbr+1]));
-+ TEST_MPI("MPI_Get_address");
- #endif /* NO_MPI_TYPE */
-
- /* Add other contribution for the same task */
-@@ -1410,12 +1410,12 @@
- thread_data->gtaboffs[packnbr] = FANIN_INFOTAB(t);
- thread_data->gtaboffs[packnbr+1] = FANIN_COEFTAB(t);
- #else /* NO_MPI_TYPE */
-- CALL_MPI MPI_Address(FANIN_INFOTAB(t),
-+ CALL_MPI MPI_Get_address(FANIN_INFOTAB(t),
- &(thread_data->gtaboffs[packnbr]));
-- TEST_MPI("MPI_Address");
-- CALL_MPI MPI_Address(FANIN_COEFTAB(t),
-+ TEST_MPI("MPI_Get_address");
-+ CALL_MPI MPI_Get_address(FANIN_COEFTAB(t),
- &(thread_data->gtaboffs[packnbr+1]));
-- TEST_MPI("MPI_Address");
-+ TEST_MPI("MPI_Get_address");
- #endif /* NO_MPI_TYPE */
-
- if (queueSize(sendqueue))
-@@ -1508,10 +1508,10 @@
- TEST_MPI("MPI_Rsend");
- # endif
- #else /* NO_MPI_TYPE */
-- CALL_MPI MPI_Type_struct(2*(packnbr/2+1), thread_data->gtabsize,
-+ CALL_MPI MPI_Type_create_struct(2*(packnbr/2+1), thread_data->gtabsize,
- thread_data->gtaboffs,
- thread_data->gtabtype, &newtype);
-- TEST_MPI("MPI_Type_struct");
-+ TEST_MPI("MPI_Type_create_struct");
- CALL_MPI MPI_Type_commit(&newtype);
- TEST_MPI("MPI_Type_commit");
- # ifdef TEST_ISEND
-@@ -1602,15 +1602,15 @@
- (long)me, (unsigned int)(intptr_t)BTAG_COEFTAB(t));
-
- #ifndef NO_MPI_TYPE
-- CALL_MPI MPI_Address(BTAG_BTAGTAB(t),&(taboffs[0]));
-- TEST_MPI("MPI_Address");
-- CALL_MPI MPI_Address(BTAG_BCOFTAB(t),&(taboffs[1]));
-- TEST_MPI("MPI_Address");
-- CALL_MPI MPI_Address((void *)BTAG_COEFTAB(t),&(taboffs[2]));
-- TEST_MPI("MPI_Address");
-+ CALL_MPI MPI_Get_address(BTAG_BTAGTAB(t),&(taboffs[0]));
-+ TEST_MPI("MPI_Get_address");
-+ CALL_MPI MPI_Get_address(BTAG_BCOFTAB(t),&(taboffs[1]));
-+ TEST_MPI("MPI_Get_address");
-+ CALL_MPI MPI_Get_address((void *)BTAG_COEFTAB(t),&(taboffs[2]));
-+ TEST_MPI("MPI_Get_address");
-
-- CALL_MPI MPI_Type_struct(3,tabsize,taboffs,tabtype,&newtype);
-- TEST_MPI("MPI_Type_struct");
-+ CALL_MPI MPI_Type_create_struct(3,tabsize,taboffs,tabtype,&newtype);
-+ TEST_MPI("MPI_Type_create_struct");
-
- CALL_MPI MPI_Type_commit(&newtype);
- TEST_MPI("MPI_Type_commit");
---- a/sopalin/src/updo_sendrecv.c
-+++ b/sopalin/src/updo_sendrecv.c
-@@ -347,12 +347,12 @@
- tabtype[0] = COMM_INT;
- tabtype[1] = COMM_FLOAT;
-
-- CALL_MPI MPI_Address(infotab,&(taboffs[0]));
-- TEST_MPI("MPI_Address");
-- CALL_MPI MPI_Address(FANIN_COEFTAB(SOLV_FTGTIND(j)),&(taboffs[1]));
-- TEST_MPI("MPI_Address");
-- CALL_MPI MPI_Type_struct(2,tabsize,taboffs,tabtype,&newtype);
-- TEST_MPI("MPI_Type_struct");
-+ CALL_MPI MPI_Get_address(infotab,&(taboffs[0]));
-+ TEST_MPI("MPI_Get_address");
-+ CALL_MPI MPI_Get_address(FANIN_COEFTAB(SOLV_FTGTIND(j)),&(taboffs[1]));
-+ TEST_MPI("MPI_Get_address");
-+ CALL_MPI MPI_Type_create_struct(2,tabsize,taboffs,tabtype,&newtype);
-+ TEST_MPI("MPI_Type_create_struct");
- CALL_MPI MPI_Type_commit(&newtype);
- TEST_MPI("MPI_Type_commit");
- # endif /* NO_MPI_TYPE */
-@@ -974,8 +974,8 @@
-
- tabtype[0] = COMM_INT;
-
-- CALL_MPI MPI_Address(infotab,&(taboffs[0]));
-- TEST_MPI("MPI_Address");
-+ CALL_MPI MPI_Get_address(infotab,&(taboffs[0]));
-+ TEST_MPI("MPI_Get_address");
-
- /* If schur, send empty data */
- if ((sopalin_data->sopar->iparm[IPARM_SCHUR] == API_YES &&
-@@ -988,12 +988,12 @@
- for (iter=1; iter<UPDOWN_SM2XNBR+1; iter++) {
- tabsize[iter] = size;
- tabtype[iter] = COMM_FLOAT;
-- CALL_MPI MPI_Address(gb+((iter-1)*UPDOWN_SM2XSZE),&(taboffs[iter]));
-- TEST_MPI("MPI_Address");
-+ CALL_MPI MPI_Get_address(gb+((iter-1)*UPDOWN_SM2XSZE),&(taboffs[iter]));
-+ TEST_MPI("MPI_Get_address");
- }
- }
-- CALL_MPI MPI_Type_struct(UPDOWN_SM2XNBR+1,tabsize,taboffs,tabtype,&newtype);
-- TEST_MPI("MPI_Type_struct");
-+ CALL_MPI MPI_Type_create_struct(UPDOWN_SM2XNBR+1,tabsize,taboffs,tabtype,&newtype);
-+ TEST_MPI("MPI_Type_create_struct");
- CALL_MPI MPI_Type_commit(&newtype);
- TEST_MPI("MPI_Type_commit");
-
diff --git a/sci-libs/pastix/pastix-5.2.3.ebuild b/sci-libs/pastix/pastix-5.2.3.ebuild
deleted file mode 100644
index 4b0bafedefaf..000000000000
--- a/sci-libs/pastix/pastix-5.2.3.ebuild
+++ /dev/null
@@ -1,118 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit fortran-2 toolchain-funcs
-
-# TODO:
-# testing: emake examples?
-# better doc instalation and building
-# pypastix (separate package?)
-# multilib with eselect?
-# static libs building without pic
-# metis?
-
-# package id: change every version, see the link on inriaforge
-PID=218
-DESCRIPTION="Parallel solver for very large sparse linear systems"
-HOMEPAGE="https://solverstack.gitlabpages.inria.fr/pastix/ https://gitlab.inria.fr/solverstack/pastix"
-SRC_URI="https://gforge.inria.fr/frs/download.php/latestfile/${PID}/${PN}_${PV}.tar.bz2"
-S="${WORKDIR}/${PN}_${PV}/src"
-
-LICENSE="CeCILL-C"
-SLOT="0"
-KEYWORDS="amd64 arm arm64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc int64 mpi +smp starpu static-libs"
-
-RDEPEND="
- sci-libs/scotch:0=[int64?,mpi?]
- sys-apps/hwloc:0=
- virtual/blas
- mpi? ( virtual/mpi )
- starpu? ( dev-libs/starpu:0= )"
-DEPEND="${RDEPEND}"
-BDEPEND="virtual/pkgconfig"
-
-PATCHES=( "${FILESDIR}"/${P}-MPI-3.0.patch )
-
-src_prepare() {
- default
- sed -e 's/^\(HOSTARCH\s*=\).*/\1 ${HOST}/' \
- -e "s:^\(CCPROG\s*=\).*:\1 $(tc-getCC):" \
- -e "s:^\(CFPROG\s*=\).*:\1 $(tc-getFC):" \
- -e "s:^\(CF90PROG\s*=\).*:\1 $(tc-getFC):" \
- -e "s:^\(ARPROG\s*=\).*:\1 $(tc-getAR):" \
- -e "s:^\(CCFOPT\s*=\).*:\1 ${FFLAGS}:" \
- -e "s:^\(CCFDEB\s*=\).*:\1 ${FFLAGS}:" \
- -e 's:^\(EXTRALIB\s*=\).*:\1 -lm -lrt:' \
- -e "s:^#\s*\(ROOT\s*=\).*:\1 \$(DESTDIR)${EPREFIX}/usr:" \
- -e 's:^#\s*\(INCLUDEDIR\s*=\).*:\1 $(ROOT)/include:' \
- -e 's:^#\s*\(BINDIR\s*=\).*:\1 $(ROOT)/bin:' \
- -e "s:^#\s*\(LIBDIR\s*=\).*:\1 \$(ROOT)/$(get_libdir):" \
- -e 's:^#\s*\(SHARED\s*=\).*:\1 1:' \
- -e 's:^#\s*\(SOEXT\s*=\).*:\1 .so:' \
- -e '/fPIC/s/^#//g' \
- -e "s:^#\s*\(SHARED_FLAGS\s*=.*\):\1 ${LDFLAGS}:" \
- -e "s:pkg-config:$(tc-getPKG_CONFIG):g" \
- -e "s:^\(BLASLIB\s*=\).*:\1 $($(tc-getPKG_CONFIG) --libs blas):" \
- -e "s:^\s*\(HWLOC_HOME\s*?=\).*:\1 ${EPREFIX}/usr:" \
- -e "s:-I\$(HWLOC_INC):$($(tc-getPKG_CONFIG) --cflags hwloc):" \
- -e "s:-L\$(HWLOC_LIB) -lhwloc:$($(tc-getPKG_CONFIG) --libs hwloc):" \
- -e "s:^\s*\(SCOTCH_HOME\s*?=\).*:\1 ${EPREFIX}/usr:" \
- -e "s:^\s*\(SCOTCH_INC\s*?=.*\):\1/scotch:" \
- -e "s:^\s*\(SCOTCH_LIB\s*?=.*\)lib:\1$(get_libdir):" \
- config/LINUX-GNU.in > config.in || die
- sed -e 's/__SO_NAME__,$@/__SO_NAME__,$(notdir $@)/g' -i Makefile || die
-}
-
-src_configure() {
- if use amd64; then
- sed -e 's/^\(VERSIONBIT\s*=\).*/\1 _64bit/' \
- -i config.in || die
- fi
-
- if use int64; then
- sed -e '/VERSIONINT.*_int64/s/#//' \
- -e '/CCTYPES.*INTSSIZE64/s/#//' \
- -i config.in || die
- fi
-
- if ! use mpi; then
- sed -e '/VERSIONMPI.*_nompi/s/#//' \
- -e '/CCTYPES.*NOMPI/s/#//' \
- -e '/MPCCPROG\s*= $(CCPROG)/s/#//' \
- -e '/MCFPROG\s*= $(CFPROG)/s/#//' \
- -e 's/-DDISTRIBUTED//' \
- -e 's/-lptscotch/-lscotch/g' \
- -i config.in || die
- fi
-
- if ! use smp; then
- sed -e '/VERSIONSMP.*_nosmp/s/#//' \
- -e '/CCTYPES.*NOSMP/s/#//' \
- -i config.in || die
- fi
-
- if use starpu; then
- sed -e '/libstarpu/s/#//g' -i config.in || die
- fi
-}
-
-src_compile() {
- emake all drivers
-}
-
-src_test() {
- # both test and tests targets are defined and do not work
- emake examples
- echo
-}
-
-src_install() {
- default
- sed -e "s:${D}::g" -i "${ED}"/usr/bin/pastix-conf || die
- # quick and dirty (static libs should really be built without pic)
- cd .. || die
- dodoc README.txt doc/refcard/refcard.pdf
-}