diff options
Diffstat (limited to 'sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch')
| -rw-r--r-- | sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch | 199 |
1 files changed, 199 insertions, 0 deletions
diff --git a/sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch b/sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch new file mode 100644 index 000000000000..cdf48e4784c6 --- /dev/null +++ b/sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch @@ -0,0 +1,199 @@ +diff -Naur pdb-extract-v3.004-prod-src/Makefile pdb-extract-v3.004-prod-src.new/Makefile +--- pdb-extract-v3.004-prod-src/Makefile 2007-09-11 11:19:46.000000000 -0400 ++++ pdb-extract-v3.004-prod-src.new/Makefile 2009-12-03 21:34:10.000000000 -0500 +@@ -52,7 +52,7 @@ + echo "------------------------------------------------------------"; \ + echo "**** Making $$libdir ****"; \ + echo "------------------------------------------------------------"; \ +- (cd $$libdir && $(MAKE) -f $(MAKEFILE) "OPT=-O" install) || exit 1; \ ++ (cd $$libdir && $(MAKE) -f $(MAKEFILE) C_OPT="${CFLAGS}" CCC_OPT="${CXXFLAGS}" F_OPT="${FFLAGS}" LDFLAGS_OPT="${LDFLAGS}" install) || exit 1; \ + done + + beta: +diff -Naur pdb-extract-v3.004-prod-src/etc/make.platform.darwin3 pdb-extract-v3.004-prod-src.new/etc/make.platform.darwin3 +--- pdb-extract-v3.004-prod-src/etc/make.platform.darwin3 2007-09-11 11:19:46.000000000 -0400 ++++ pdb-extract-v3.004-prod-src.new/etc/make.platform.darwin3 2009-12-03 21:34:10.000000000 -0500 +@@ -91,7 +91,7 @@ + DEFINES=$(GDEFINES) $(LDEFINES) + + ## Global include directories +-GINCLUDES= ++GINCLUDES=-I@GENTOO_PORTAGE_EPREFIX@/usr/include/cifparse-obj + + # Collect all include directories from global include directories and + # include directories specified in module makefile +@@ -159,7 +159,7 @@ + STATIC_LINKING= + + # Linker flags +-LDFLAGS=$(ABI) -w $(STATIC_LINKING) ++LDFLAGS=$(LDFLAGS_OPT) $(ABI) -w $(STATIC_LINKING) + + # Fortran linker + F77_LINKER=f77 +diff -Naur pdb-extract-v3.004-prod-src/etc/make.platform.darwin4 pdb-extract-v3.004-prod-src.new/etc/make.platform.darwin4 +--- pdb-extract-v3.004-prod-src/etc/make.platform.darwin4 2007-09-11 11:19:46.000000000 -0400 ++++ pdb-extract-v3.004-prod-src.new/etc/make.platform.darwin4 2009-12-03 21:34:10.000000000 -0500 +@@ -92,7 +92,7 @@ + DEFINES=$(GDEFINES) $(LDEFINES) + + ## Global include directories +-GINCLUDES= ++GINCLUDES=-I@GENTOO_PORTAGE_EPREFIX@/usr/include/cifparse-obj + + # Collect all include directories from global include directories and + # include directories specified in module makefile +@@ -160,7 +160,7 @@ + STATIC_LINKING= + + # Linker flags +-LDFLAGS=$(ABI) -w $(STATIC_LINKING) ++LDFLAGS=$(LDFLAGS_OPT) $(ABI) -w $(STATIC_LINKING) + + # Fortran linker + F77_LINKER=f77 +diff -Naur pdb-extract-v3.004-prod-src/etc/make.platform.gnu3 pdb-extract-v3.004-prod-src.new/etc/make.platform.gnu3 +--- pdb-extract-v3.004-prod-src/etc/make.platform.gnu3 2007-09-11 11:19:46.000000000 -0400 ++++ pdb-extract-v3.004-prod-src.new/etc/make.platform.gnu3 2009-12-03 21:34:10.000000000 -0500 +@@ -6,6 +6,8 @@ + ## + ########################################################################## + ++LIBDIR=@GENTOO_PORTAGE_EPREFIX@/usr/GENTOOLIBDIR ++ + #-----Lexer and Parser section-------------------------------------------# + + # Lexer executable +@@ -89,7 +91,7 @@ + DEFINES=$(GDEFINES) $(LDEFINES) + + ## Global include directories +-GINCLUDES= ++GINCLUDES=-I@GENTOO_PORTAGE_EPREFIX@/usr/include/cifparse-obj + + # Collect all include directories from global include directories and + # include directories specified in module makefile +@@ -107,8 +109,8 @@ + C_WARNINGS=$(WARNINGS) + + # C compiler flags +-CFLAGS=$(OPT) $(ABI) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) +-CFLAGS_NONANSI=$(OPT) $(ABI) $(NON_ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) \ ++CFLAGS=$(C_OPT) $(ABI) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) ++CFLAGS_NONANSI=$(C_OPT) $(ABI) $(NON_ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) \ + $(INCLUDES) + + ## C++ compiler +@@ -128,9 +130,9 @@ + EXT=C + + # C++ compiler flags +-C++FLAGS=$(OPT) $(ABI) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) $(DEFINES) \ ++C++FLAGS=$(CCC_OPT) $(ABI) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) $(DEFINES) \ + $(INCLUDES) +-C++FLAGS_NONANSI=$(OPT) $(ABI) $(NON_ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ ++C++FLAGS_NONANSI=$(CCC_OPT) $(ABI) $(NON_ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ + $(DEFINES) $(INCLUDES) + # C++FLAGS_RELAXED should be set to avoid warnings reported by third party + # source code that is not maintained by PDB +@@ -144,7 +146,7 @@ + F77=f77 + + # Fortran compiler flags +-FFLAGS=-O -u ++FFLAGS=$(F_OPT) + + # Additional Fortran libraries + F77LIBS= +@@ -154,11 +156,11 @@ + #-----Linkers section----------------------------------------------------# + + # Static linking option. If not defined, dynamic linking is used. +-STATIC_LINKING=-static ++STATIC_LINKING= + + # Linker flags +-LDFLAGS=$(ABI) -w $(STATIC_LINKING) +-LDFLAGS_NO_STATIC=$(ABI) -w ++LDFLAGS=$(LDFLAGS_OPT) $(ABI) -w $(STATIC_LINKING) ++LDFLAGS_NO_STATIC=$(LDFLAGS_OPT) $(ABI) -w + + # Fortran linker + F77_LINKER=f77 +diff -Naur pdb-extract-v3.004-prod-src/etc/make.platform.gnu4 pdb-extract-v3.004-prod-src.new/etc/make.platform.gnu4 +--- pdb-extract-v3.004-prod-src/etc/make.platform.gnu4 2007-09-11 11:19:46.000000000 -0400 ++++ pdb-extract-v3.004-prod-src.new/etc/make.platform.gnu4 2009-12-03 21:34:10.000000000 -0500 +@@ -6,6 +6,8 @@ + ## + ########################################################################## + ++LIBDIR=@GENTOO_PORTAGE_EPREFIX@/usr/GENTOOLIBDIR ++ + #-----Lexer and Parser section-------------------------------------------# + + # Lexer executable +@@ -34,7 +36,7 @@ + + # WARNINGS_AS_ERRORS defines flags to instruct all compilers to treat all + # warnings as errors. +-WARNINGS_AS_ERRORS=-Werror ++WARNINGS_AS_ERRORS= + + # ALL_WARNINGS defines flags to instruct all compilers to report all + # warnings. +@@ -90,7 +92,7 @@ + DEFINES=$(GDEFINES) $(LDEFINES) + + ## Global include directories +-GINCLUDES= ++GINCLUDES=-I@GENTOO_PORTAGE_EPREFIX@/usr/include/cifparse-obj + + # Collect all include directories from global include directories and + # include directories specified in module makefile +@@ -108,8 +110,8 @@ + C_WARNINGS=$(WARNINGS) + + # C compiler flags +-CFLAGS=$(OPT) $(ABI) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) +-CFLAGS_NONANSI=$(OPT) $(ABI) $(NON_ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) \ ++CFLAGS=$(C_OPT) $(ABI) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) ++CFLAGS_NONANSI=$(C_OPT) $(ABI) $(NON_ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) \ + $(INCLUDES) + + ## C++ compiler +@@ -129,9 +131,9 @@ + EXT=C + + # C++ compiler flags +-C++FLAGS=$(OPT) $(ABI) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) $(DEFINES) \ ++C++FLAGS=$(CCC_OPT) $(ABI) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) $(DEFINES) \ + $(INCLUDES) +-C++FLAGS_NONANSI=$(OPT) $(ABI) $(NON_ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ ++C++FLAGS_NONANSI=$(CCC_OPT) $(ABI) $(NON_ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ + $(DEFINES) $(INCLUDES) + # C++FLAGS_RELAXED should be set to avoid warnings reported by third party + # source code that is not maintained by PDB +@@ -145,7 +147,7 @@ + F77=f77 + + # Fortran compiler flags +-FFLAGS=-O -u ++FFLAGS=$(F_OPT) + + # Additional Fortran libraries + F77LIBS= +@@ -155,11 +157,11 @@ + #-----Linkers section----------------------------------------------------# + + # Static linking option. If not defined, dynamic linking is used. +-STATIC_LINKING=-static ++STATIC_LINKING= + + # Linker flags +-LDFLAGS=$(ABI) -w $(STATIC_LINKING) +-LDFLAGS_NO_STATIC=$(ABI) -w ++LDFLAGS=$(LDFLAGS_OPT) $(ABI) -w $(STATIC_LINKING) ++LDFLAGS_NO_STATIC=$(LDFLAGS_OPT) $(ABI) -w + + # Fortran linker + F77_LINKER=f77 |