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path: root/sci-biology/fasta
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* sci-biology/fasta: add 36.3.8iEli Schwartz2024-08-222-0/+82
| | | | | | | | | | A 2022 release, how modern. :D Ignore the part where the tag name contains the date "2020". It obsoletes the patch as well, which seems good. However it does NOT fix the LTO issue. Signed-off-by: Eli Schwartz <eschwartz@gentoo.org>
* sci-biology/fasta: mark as LTO-unsafeEli Schwartz2024-08-221-0/+5
| | | | | Closes: https://bugs.gentoo.org/862267 Signed-off-by: Eli Schwartz <eschwartz@gentoo.org>
* sci-biology/fasta: remove tcsh as a test dependency, drop IUSEEli Schwartz2024-08-221-5/+2
| | | | | | | | | | | | | | | | | | | | | This has been present since the initial import into cvs: https://gitweb.gentoo.org/archive/repo/gentoo-2.git/commit/?id=fe5d632c39746b7b396434277896dd0e58e15567 It does not seem to have made any sense at the time -- the compile phase required running `emake -f ../make/Makefile***` because upstream was one of those projects that apparently liked having code separate from ways to build the code (???) and no src_test was defined at all. So having a test dependency made no real sense as tests were never run!!! There is an actual test phase today. It manually runs an sh script, and tcsh still isn't involved anywhere. There are two entirely separate tcsh scripts in the upstream codebase, though. Regardless, having this test dependency is nonsensical. So is having IUSE=test and a matching RESTRICT. None of this gets us *anything*. Therefore, drop it. Signed-off-by: Eli Schwartz <eschwartz@gentoo.org>
* sci-biology/fasta: add github upstream metadataSam James2022-07-301-4/+7
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-biology/fasta: [QA] fix tc-get* quotingSam James2022-03-201-3/+3
| | | | | | This can cause build problems for e.g. 32-bit (gcc -m32 ...) Signed-off-by: Sam James <sam@gentoo.org>
* sci-biology/fasta: fix broken README symlinkDavid Seifert2022-03-191-1/+1
| | | | | Closes: https://bugs.gentoo.org/835634 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/fasta: drop 36.3.5eDavid Seifert2022-03-193-154/+0
| | | | | | Closes: https://bugs.gentoo.org/648618 Closes: https://bugs.gentoo.org/828700 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/fasta: add 36.3.8hDavid Seifert2022-03-193-0/+145
| | | | | | Bug: https://bugs.gentoo.org/648618 Bug: https://bugs.gentoo.org/828700 Signed-off-by: David Seifert <soap@gentoo.org>
* **/metadata.xml: Replace http by https in DOCTYPE elementUlrich Müller2021-09-111-1/+1
| | | | | Bug: https://bugs.gentoo.org/552720 Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-biology/fasta: eutils->epatchSam James2021-04-181-1/+1
| | | | | Package-Manager: Portage-3.0.14-prefix, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-biology/fasta: drop x86-macosFabian Groffen2021-01-061-2/+2
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Fabian Groffen <grobian@gentoo.org>
* */*: [QA] Remove redundant `|| die` guardsDavid Seifert2019-12-111-1/+1
| | | | | | | | | | | | * Since all ebuilds in the tree are EAPI>=4, `|| die` on builtin commands is redundant and dead code. Closes: https://github.com/gentoo/gentoo/pull/13940 Reviewed-by: Ulrich Müller <ulm@gentoo.org> Reviewed-by: Michał Górny <mgorny@gentoo.org> Reviewed-by: Andreas K. Hüttel <dilfridge@gentoo.org> Signed-off-by: David Seifert <soap@gentoo.org>
* */*: [QA] Fix trivial cases of MissingTestRestrictMichał Górny2019-12-111-1/+2
| | | | | | | | | | | | | | | | | | The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/fasta: use HTTPsMichael Mair-Keimberger2018-05-211-2/+2
| | | | Closes: https://github.com/gentoo/gentoo/pull/8513
* sci-biology/fasta: Remove oldDavid Seifert2018-01-013-84/+0
| | | | Package-Manager: Portage-2.3.19, Repoman-2.3.6
* sci-biology/*: Update Manifest hashesMichał Górny2017-12-101-2/+2
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* sci-biology/fasta: Strip empty metadata.xml elementsMichał Górny2017-10-041-2/+0
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* Drop $Id$ per council decision in bug #611234.Robin H. Johnson2017-02-282-2/+0
| | | | Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
* sci-biology/fasta: Cleanup per bug #146900Pacho Ramos2016-08-061-4/+0
| | | | Package-Manager: portage-2.3.0
* Set appropriate maintainer types in metadata.xml (GLEP 67)Michał Górny2016-01-241-2/+2
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* Replace all herds with appropriate projects (GLEP 67)Michał Górny2016-01-241-1/+4
| | | | | Replace all uses of herd with appropriate project maintainers, or no maintainers in case of herds requested to be disbanded.
* Revert DOCTYPE SYSTEM https changes in metadata.xmlMike Gilbert2015-08-241-1/+1
| | | | | | | repoman does not yet accept the https version. This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450. Bug: https://bugs.gentoo.org/552720
* Use https by defaultJustin Lecher2015-08-241-1/+1
| | | | | | Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
* proj/gentoo: Initial commitRobin H. Johnson2015-08-086-0/+250
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed