Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
summaryrefslogtreecommitdiff
path: root/sci-biology/samtools
Commit message (Collapse)AuthorAgeFilesLines
* sci-biology/samtools: Add sys-libs/ncurses[unicode(+)]David Seifert2021-07-171-2/+2
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/samtools: add missing multilib inherit for get_libnameSam James2021-05-131-2/+2
| | | | | | | | Found using: `grep -rsn -L -e "inherit.*multilib.*" | xargs grep "get_libname"` Signed-off-by: Sam James <sam@gentoo.org> Signed-off-by: David Seifert <soap@gentoo.org>
* */*: Normalize metadata.xml filesMichał Górny2021-03-161-1/+1
| | | | | | | | | | | Normalize quoting, replace '>' with entities, replace unnecessary entities, remove trailing empty lines. Done via: find -name metadata.xml -exec xml ed -P -L -d //none {} + Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/samtools: Remove oldDavid Seifert2020-08-034-525/+0
| | | | | | Closes: https://bugs.gentoo.org/728018 Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/samtools: [QA] Fix UnnecessarySlashStripDavid Seifert2020-08-031-5/+5
| | | | | Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/samtools: Remove ancient py2 varfilter.py scriptDavid Seifert2020-08-031-23/+13
| | | | | | Closes: https://bugs.gentoo.org/735444 Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/samtools: Bump to version 1.10David Seifert2020-08-032-0/+57
| | | | | | Bug: https://bugs.gentoo.org/728018 Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/samtools: Remove python dependencyDavid Seifert2020-03-271-11/+8
| | | | | | Closes: https://bugs.gentoo.org/710252 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/samtools: Version bump to 1.9David Seifert2018-10-282-0/+53
| | | | | | Bug: https://bugs.gentoo.org/647714 Signed-off-by: David Seifert <soap@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11
* sci-biology/*: Update Manifest hashesMichał Górny2017-12-101-2/+2
|
* sci-biology/samtools: Add missing -I. to CPPFLAGSDavid Seifert2017-09-021-1/+1
| | | | | Bug: https://bugs.gentoo.org/show_bug.cgi?id=629666 Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-biology/samtools: Remove oldDavid Seifert2017-09-0214-1995/+0
| | | | | | | | Bug: https://bugs.gentoo.org/show_bug.cgi?id=548170 Bug: https://bugs.gentoo.org/show_bug.cgi?id=620618 Bug: https://bugs.gentoo.org/show_bug.cgi?id=625504 Package-Manager: Portage-2.3.8, Repoman-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/5593
* sci-biology/samtools: Version bump to 1.5David Seifert2017-09-023-0/+475
| | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3
* Globally add missing remote ID references to metadata.xmlJustin Lecher2017-04-291-1/+2
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/samtools: [QA] Add missing python metadata variablesDavid Seifert2017-04-206-18/+18
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* Drop $Id$ per council decision in bug #611234.Robin H. Johnson2017-02-288-8/+0
| | | | Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
* sci-biology/samtools: Use 'python-single-r1' instead of 'python-r1'David Seifert2016-10-031-17/+21
| | | | Package-Manager: portage-2.3.1
* sci-biology/samtools: Remove lua dep, fix perl shebangsDavid Seifert2016-04-101-3/+14
| | | | Package-Manager: portage-2.2.28
* sci-biology/samtools: Remove lua dep, fix perl shebangsDavid Seifert2016-04-091-1/+11
| | | | Package-Manager: portage-2.2.28
* sci-biology/samtools: version bump to 1.3, to match htslibDavid Seifert2016-03-284-0/+998
| | | | | | | | * EAPI=6 * Added modern AX_WITH_CURSES that works with pkg-config * Fixed incorrect symlinks for libbam.so Package-Manager: portage-2.2.28
* sci-biology/samtools: Move to SLOT="0.1-legacy" for future legacy versionsDavid Seifert2016-03-282-11/+11
| | | | Package-Manager: portage-2.2.28
* sci-biology/samtools: Add elog message discouraging direct useDavid Seifert2016-03-281-0/+6
| | | | Package-Manager: portage-2.2.28
* sci-biology/samtools: Version bump to 0.1.20David Seifert2016-03-283-0/+271
| | | | | | | | | * EAPI=6 * samtools will be slotted with SLOT="legacy", in order to be able to install applications that rely on the old monolithic library. Package-Manager: portage-2.2.28
* sci-biology/samtools: Trim DESCRIPTIONDavid Seifert2016-03-281-3/+3
| | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28
* sci-biology/samtools: Trim DESCRIPTIONDavid Seifert2016-03-281-3/+3
| | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28
* sci-biology/samtools: Trim DESCRIPTIONDavid Seifert2016-03-281-3/+3
| | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28
* sci-biology/samtools: Trim DESCRIPTIONDavid Seifert2016-03-281-3/+3
| | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28
* sci-biology/samtools: Trim DESCRIPTIONDavid Seifert2016-03-281-3/+3
| | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28
* sci-biology/samtools: Trim DESCRIPTIONDavid Seifert2016-03-281-2/+2
| | | | Package-Manager: portage-2.2.28
* Set appropriate maintainer types in metadata.xml (GLEP 67)Michał Górny2016-01-241-1/+1
|
* Replace all herds with appropriate projects (GLEP 67)Michał Górny2016-01-241-1/+4
| | | | | Replace all uses of herd with appropriate project maintainers, or no maintainers in case of herds requested to be disbanded.
* sci-biology/samtools: amd64 stable wrt bug #525630Agostino Sarubbo2015-09-241-1/+1
| | | | | Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="amd64"
* Update hashes in ManifestJustin Lecher2015-09-231-1/+1
| | | | | | Add missing SHA512 and WHIRLPOOL hashes Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Revert DOCTYPE SYSTEM https changes in metadata.xmlMike Gilbert2015-08-241-1/+1
| | | | | | | repoman does not yet accept the https version. This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450. Bug: https://bugs.gentoo.org/552720
* Use https by defaultJustin Lecher2015-08-241-1/+1
| | | | | | Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
* proj/gentoo: Initial commitRobin H. Johnson2015-08-0812-0/+1001
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed