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# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit flag-o-matic fortran-2 toolchain-funcs
DESCRIPTION="A suite of algorithms for ecological bioinformatics"
HOMEPAGE="https://www.mothur.org/"
SRC_URI="https://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip"
S="${WORKDIR}/${PN^}.source"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="amd64 ~x86"
IUSE="mpi +readline"
RDEPEND="
sci-biology/uchime
mpi? ( virtual/mpi )"
DEPEND="${RDEPEND}"
BDEPEND="app-arch/unzip"
PATCHES=(
"${FILESDIR}"/${P}-makefile.patch
"${FILESDIR}"/${P}-overflows.patch
)
src_configure() {
use mpi && export CXX=mpicxx || tc-export CXX
use amd64 && append-cppflags -DBIT_VERSION
}
src_compile() {
emake \
USEMPI=$(usex mpi) \
USEREADLINE=$(usex readline)
}
src_install() {
dobin mothur
}
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