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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_{6,7,8,9} )
DISTUTILS_USE_SETUPTOOLS=no
inherit distutils-r1 eutils multilib
DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
HOMEPAGE="https://salilab.org/modeller/"
SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz"
LICENSE="modeller"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="doc examples"
SLOT="0"
RESTRICT="mirror"
DEPEND=">=dev-lang/swig-1.3"
RDEPEND=""
INPATH="${EPREFIX}"/opt/modeller${ver}
QA_PREBUILT="/opt/*"
pkg_setup() {
case ${ARCH} in
x86)
EXECTYPE="i386-intel8";;
amd64)
EXECTYPE="x86_64-intel8";;
*)
die "Your arch "${ARCH}" does not appear supported at this time.";;
esac
}
python_prepare_all(){
sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
rm -rf modlib/modeller/python_library || die
sed -i '1 i\#!/usr/bin/python' bin/modslave.py || die
2to3 -w -n modlib/modeller || die
distutils-r1_python_prepare_all
}
python_compile(){
cd src/swig || die
swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
distutils-r1_python_compile
}
python_install() {
cd src/swig || die
distutils-r1_python_install
}
python_install_all(){
cd "${S}" || die
sed \
-e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
-e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \
-i bin/modscript || die
sed -e "s;@TOPDIR\@;\"${INPATH}\";" \
-e "s;@EXETYPE\@;${EXECTYPE};" \
bin/modpy.sh.in > "${T}/modpy.sh"
insinto ${INPATH}
doins -r modlib
python_foreach_impl python_domodule modlib/modeller
insinto ${INPATH}/bin
doins -r bin/{lib,*top}
exeinto ${INPATH}/bin
doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh
python_foreach_impl python_doscript bin/modslave.py
dosym ${INPATH}/bin/modscript /opt/bin/mod${PV}
dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh
exeinto ${INPATH}/lib/${EXECTYPE}/
doexe lib/${EXECTYPE}/lib*
dosym libmodeller.so.12 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.12 /usr/$(get_libdir)/libmodeller.so.12
use doc && HTML_DOCS=( doc/. )
distutils-r1_python_install_all
if use examples; then
insinto /usr/share/${PN}/
doins -r examples
fi
insinto /etc/revdep-rebuild
cat >> "${T}"/40-${PN} <<- EOF
SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/"
EOF
doins "${T}"/40-${PN}
}
pkg_postinst() {
if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then
echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py
fi
if grep -q license ${INPATH}/modlib/modeller/config.py; then
einfo "A license key file is already present in ${INPATH}/modlib/modeller/config.py"
else
ewarn "Obtain a license Key from"
ewarn "http://salilab.org/modeller/registration.html"
ewarn "And run this before using modeller:"
ewarn "emerge --config =${CATEGORY}/${PF}"
ewarn "That way you can [re]enter your license key."
fi
}
pkg_postrm() {
ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py"
ewarn "that you need to remove to completely get rid of modeller."
}
pkg_config() {
ewarn "Your license key is NOT checked for validity here."
ewarn " Make sure you type it in correctly."
eerror "If you CTRL+C out of this, modeller will not run!"
while true
do
einfo "Please enter your license key:"
read license_key1
einfo "Please re-enter your license key:"
read license_key2
if [[ "$license_key1" == "" ]]
then
echo "You entered a blank license key. Try again."
else
if [[ "$license_key1" == "$license_key2" ]]
then
echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py"
einfo "Thank you!"
break
else
eerror "Your license key entries do not match. Try again."
fi
fi
done
}
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