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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit multilib toolchain-funcs
DESCRIPTION="Maximum likelihood superpositioning and analysis of macromolecular structures"
HOMEPAGE="http://www.theseus3d.org/"
SRC_URI="http://www.theseus3d.org/src/${PN}_${PV}.tar.gz"
SLOT="0"
LICENSE="GPL-3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
RDEPEND="
sci-libs/gsl
|| (
sci-biology/muscle
sci-biology/probcons
sci-biology/mafft
sci-biology/t-coffee
sci-biology/kalign
sci-biology/clustalw:2
)"
DEPEND="${RDEPEND}
virtual/pkgconfig"
S="${WORKDIR}"/${PN}_src/
src_prepare() {
cat >> make.inc <<- EOF
ARCH = $(tc-getAR)
ARCHFLAGS = -rvs
RANLIB = $(tc-getRANLIB)
LOCALLIBDIR = "${EPREFIX}/usr/$(get_libdir)
SYSLIBS = $(pkg-config --libs gsl) -lpthread
LIBS = -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus
LIBDIR = -L./lib
INSTALLDIR = "${ED}"/usr/bin
OPT =
WARN =
CFLAGS = ${CFLAGS} -std=c11 \$(WARN)
CC = $(tc-getCC)
EOF
sed \
-e 's|theseus:|theseus: libs|g' \
-e '/-o theseus/s:$(CC):$(CC) ${LDFLAGS}:g' \
-i Makefile || die
sed \
-e 's:/usr/bin/sed:sed:g' \
-e "s:/usr/local/bin/:/usr/bin/:g" \
-e "s:/usr/bin/:${EPREFIX}/usr/bin/:g" \
-i theseus_align || die
}
src_compile () {
emake ltheseus
default
}
src_install() {
dobin theseus theseus_align
dodoc theseus_man.pdf README AUTHORS
use examples && insinto /usr/share/${PN} && doins -r examples
}
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