Testing release for revision bump

Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64

3 files changed, 96 insertions, 3 deletions

diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog
index 27fc3db54185..8866e83267e3 100644
--- a/sci-biology/bioperl/ChangeLog
+++ b/sci-biology/bioperl/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/bioperl
-# Copyright 2002-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.32 2008/07/15 14:26:27 armin76 Exp $
+# Copyright 2002-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.33 2009/03/13 00:41:34 weaver Exp $
+
+*bioperl-1.6.0 (12 Mar 2009)
+
+  12 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-1.6.0.ebuild:
+  Testing release for revision bump
 
   15 Jul 2008; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
   x86 stable wrt #222727
diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest
index 2eaa985530e9..1abac3d3601c 100644
--- a/sci-biology/bioperl/Manifest
+++ b/sci-biology/bioperl/Manifest
@@ -1,6 +1,8 @@
+DIST BioPerl-1.6.0.tar.bz2 5640786 RMD160 89261afbbc3754a1dd78934b7b8b653593aa3427 SHA1 7b442ddcb02233c4cb9963a2ea883f755f6904bb SHA256 50a35b1b2552c8f54c83f2bbba7b36264e94443374b86b389208437c8cae3bf6
 DIST bioperl-1.4.tar.bz2 4224508 RMD160 657170cc17655f2ab9ed5f6509cac5ae7eedd2c3 SHA1 d0683ff46ef304c04a40296561065d78baa0d787 SHA256 5ba68ce688ac4f079057e03b5bfca60f410d9eb68961d03b62ae75050718687b
 DIST bioperl-1.5.1.tar.bz2 5538613 RMD160 422bdd0dc17dd246ec1fc3ae6fe020705111892d SHA1 9841a458fd928eb9715f14eb686c7b1af3a379e7 SHA256 696c8bd162bc79fa3c75eeb63bb42f8cbcbb4b72de4dcb3bec7ea7a293506f6c
 EBUILD bioperl-1.4.ebuild 1144 RMD160 7e3108360f973a5199cfe5d89471980fdf475813 SHA1 da03c6457bb8feefd939ec532c0292a31eeb3c57 SHA256 1f9f7fba2480c392b99e860af10910a881e39af8123540bc8e7e6ccf206cf741
 EBUILD bioperl-1.5.1-r1.ebuild 1191 RMD160 1ad0bd41869118ce4482427e7de56829f7fe22ce SHA1 c50b157d571897c896b678d6456f0f7bbed3b60b SHA256 bdee9659d5d464c2339678c1854bac42cf83e900d20380d6c4c3f1ff1606d504
-MISC ChangeLog 6559 RMD160 cbcbc2099cae95896ebc2f78fc53f74c817b767c SHA1 3250236ea1558ebe97d99cf4b0233fad654128d0 SHA256 83b0e6577c33fe2adf83a32e3f779ba01c583707a417a255f5b7b3b380e10c97
+EBUILD bioperl-1.6.0.ebuild 1955 RMD160 5249a93a59e82cc8c1ee6bc710f2db3321b3cecd SHA1 f0af78d90550ed62fb468583f4b6a3a0fd86f8dc SHA256 6390540fa0672a0e8fc28e2af8ed20e5d502e44bf9d6d4f3393bc027ede2b020
+MISC ChangeLog 6698 RMD160 1fb84e6405b34293bbc81ebfec5eb9c4267f1586 SHA1 a23bf4dcaf1bf21195ab6e473c9899addc1809cc SHA256 e378b74e55a8bc6e14c1a8b76815e5903ae4b776d5f0664d3f4d66ee60fa0c47
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
diff --git a/sci-biology/bioperl/bioperl-1.6.0.ebuild b/sci-biology/bioperl/bioperl-1.6.0.ebuild
new file mode 100644
index 000000000000..a4241a881230
--- /dev/null
+++ b/sci-biology/bioperl/bioperl-1.6.0.ebuild
@@ -0,0 +1,86 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.0.ebuild,v 1.1 2009/03/13 00:41:34 weaver Exp $
+
+EAPI="1"
+
+inherit perl-module eutils
+
+DESCRIPTION="Perl tools for bioinformatics - Core modules"
+HOMEPAGE="http://www.bioperl.org/"
+SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="-minimal graphviz"
+
+# FIXME: Unhandled deps:
+# >=dev-lang/perl-5.10.0 (includes cpan >= 1.81)
+# dev-perl/SVG-Graph
+# dev-perl/Ace
+# dev-perl/Bio-ASN1-EntrezGene
+# dev-perl/XML-DOM-XPath
+# dev-perl/Convert-Binary-C
+# Deprecated/unrecognized deps from 1.5 series (to be verified):
+#virtual/perl-File-Temp
+#dev-perl/IO-String
+#dev-perl/IO-stringy
+#virtual/perl-Storable
+#dev-perl/libxml-perl
+#dev-perl/Text-Shellwords
+#~sci-libs/io_lib-1.8.12b
+#!>=sci-libs/io_lib-1.9
+#	gd? (
+#			>=dev-perl/GD-1.32-r1
+#			dev-perl/SVG
+#			dev-perl/GD-SVG
+#		)
+#	mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )"
+
+DEPEND="virtual/perl-Module-Build
+	dev-perl/Data-Stag
+	dev-perl/libwww-perl
+	!minimal? (
+		dev-perl/Spreadsheet-ParseExcel
+		>=dev-perl/XML-SAX-0.15
+		dev-perl/Graph
+		dev-perl/SOAP-Lite
+		dev-perl/Array-Compare
+		dev-perl/XML-Parser
+		dev-perl/XML-Twig
+		>=dev-perl/HTML-Parser-3.60
+		>=dev-perl/XML-Writer-0.4
+		dev-perl/Clone
+		dev-perl/XML-DOM
+		dev-perl/set-scalar
+		dev-perl/XML-XPath
+		dev-perl/Algorithm-Munkres
+		dev-perl/Data-Stag
+		dev-perl/Math-Random
+		dev-perl/PostScript
+		)
+	graphviz? ( dev-perl/GraphViz )"
+
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/BioPerl-${PV}"
+
+src_unpack() {
+	unpack ${A}
+	sed -i "/'CPAN' *=> *1.81/d" "${S}/Build.PL" || die
+}
+
+src_compile() {
+	yes "" | perl Makefile.PL ${myconf} \
+	         PREFIX=${D}/usr INSTALLDIRS=vendor || die
+}
+
+src_test() {
+	make test || die "Tests failed."
+}
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+}