Update live ebuild for upstream svm->github migration, bug 338362. Thanks to Joel Berendzen

Package-Manager: portage-2.2_rc86/cvs/Linux x86_64

1 files changed, 73 insertions, 0 deletions

diff --git a/sci-biology/bioperl/bioperl-9999-r1.ebuild b/sci-biology/bioperl/bioperl-9999-r1.ebuild
new file mode 100644
index 000000000000..bed16f097e60
--- /dev/null
+++ b/sci-biology/bioperl/bioperl-9999-r1.ebuild
@@ -0,0 +1,73 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999-r1.ebuild,v 1.1 2010/10/17 22:06:04 weaver Exp $
+
+EAPI="2"
+
+inherit perl-module git
+
+SUBPROJECTS="+db +network +run"
+
+DESCRIPTION="Perl tools for bioinformatics - Core modules"
+HOMEPAGE="http://www.bioperl.org/"
+SRC_URI=""
+EGIT_REPO_URI="git://github.com/${PN}/${PN}-live.git"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE="-minimal graphviz ${SUBPROJECTS}"
+
+CDEPEND="dev-perl/Data-Stag
+	dev-perl/libwww-perl
+	!minimal? (
+		dev-perl/Ace
+		dev-perl/Bio-ASN1-EntrezGene
+		dev-perl/Spreadsheet-ParseExcel
+		dev-perl/Spreadsheet-WriteExcel
+		>=dev-perl/XML-SAX-0.15
+		dev-perl/Graph
+		dev-perl/SOAP-Lite
+		dev-perl/Array-Compare
+		dev-perl/SVG
+		dev-perl/XML-Simple
+		dev-perl/XML-Parser
+		dev-perl/XML-Twig
+		>=dev-perl/HTML-Parser-3.60
+		>=dev-perl/XML-Writer-0.4
+		dev-perl/Clone
+		dev-perl/XML-DOM
+		dev-perl/set-scalar
+		dev-perl/XML-XPath
+		dev-perl/XML-DOM-XPath
+		dev-perl/Algorithm-Munkres
+		dev-perl/Data-Stag
+		dev-perl/Math-Random
+		dev-perl/PostScript
+		dev-perl/Convert-Binary-C
+		dev-perl/SVG-Graph
+	)
+	graphviz? ( dev-perl/GraphViz )"
+DEPEND="virtual/perl-Module-Build
+	${CDEPEND}"
+RDEPEND="${CDEPEND}"
+PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
+	db? ( >=sci-biology/bioperl-db-${PV} )
+	network? ( >=sci-biology/bioperl-network-${PV} )
+	run? ( >=sci-biology/bioperl-run-${PV} )"
+
+S="${WORKDIR}/BioPerl-${PV}"
+
+src_configure() {
+	sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
+		-e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" \
+		-e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" \
+		|| die
+	if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
+	perl-module_src_configure
+}
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+}