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authorJeffrey Gardner <je_fro@gentoo.org>2007-07-12 16:23:23 +0000
committerJeffrey Gardner <je_fro@gentoo.org>2007-07-12 16:23:23 +0000
commit750c3a3e21f09a5ae76a33931438c95128abe49f (patch)
tree291c2246442bd0b0120eee12565b9fcbbb3003b1 /sci-biology/dialign-t
parentwhitespace (diff)
downloadhistorical-750c3a3e21f09a5ae76a33931438c95128abe49f.tar.gz
historical-750c3a3e21f09a5ae76a33931438c95128abe49f.tar.bz2
historical-750c3a3e21f09a5ae76a33931438c95128abe49f.zip
Version bump, adding amd64.
Package-Manager: portage-2.1.2.9
Diffstat (limited to 'sci-biology/dialign-t')
-rw-r--r--sci-biology/dialign-t/ChangeLog7
-rw-r--r--sci-biology/dialign-t/Manifest26
-rw-r--r--sci-biology/dialign-t/dialign-t-0.2.2.ebuild39
-rw-r--r--sci-biology/dialign-t/files/digest-dialign-t-0.2.23
4 files changed, 60 insertions, 15 deletions
diff --git a/sci-biology/dialign-t/ChangeLog b/sci-biology/dialign-t/ChangeLog
index f155de2de84f..d136afdf5c30 100644
--- a/sci-biology/dialign-t/ChangeLog
+++ b/sci-biology/dialign-t/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/dialign-t
# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/ChangeLog,v 1.5 2007/02/22 01:25:19 jokey Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/ChangeLog,v 1.6 2007/07/12 16:23:23 je_fro Exp $
+
+*dialign-t-0.2.2 (12 Jul 2007)
+
+ 12 Jul 2007; Jeff Gardner <je_fro@gentoo.org> +dialign-t-0.2.2.ebuild:
+ New version, add amd64.
22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog:
Redigest for Manifest2
diff --git a/sci-biology/dialign-t/Manifest b/sci-biology/dialign-t/Manifest
index fdc39c81d8c4..c2b02770e357 100644
--- a/sci-biology/dialign-t/Manifest
+++ b/sci-biology/dialign-t/Manifest
@@ -1,15 +1,17 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
DIST DIALIGN-T_0.2.1.tar.gz 1635888 RMD160 a43807668354120b873cad0120a7691b6860ca28 SHA1 5e866806738a9467e19a4e4d8659870bd1d1cb3e SHA256 2249bf9007588e891525b4edc085285f1390c2bf8d42ce327aa9217130d7e930
+DIST DIALIGN-T_0.2.2.tar.gz 1551909 RMD160 413277d62a3a93c871c6825f06786d9c3c462de6 SHA1 71b853caf734f19767a8bba74aa022b1a9dbba13 SHA256 31c2aa031c58854f3c22abf44bf731f6cd67eb86cb46db9ce6b4b49c3011db98
EBUILD dialign-t-0.2.1.ebuild 1008 RMD160 71fb25ca449a6acd2c38dee9b2d1b1d93c2e211d SHA1 45cff5c6b28f3b36ea6334f2e53c86f2e6738640 SHA256 6f021c9b5da85508d3de01b47ff3861c04be39cab054d6658f38c1ff5b5584bc
MD5 bb116e6119c131dc5898b6dc26a373e0 dialign-t-0.2.1.ebuild 1008
RMD160 71fb25ca449a6acd2c38dee9b2d1b1d93c2e211d dialign-t-0.2.1.ebuild 1008
SHA256 6f021c9b5da85508d3de01b47ff3861c04be39cab054d6658f38c1ff5b5584bc dialign-t-0.2.1.ebuild 1008
-MISC ChangeLog 871 RMD160 1eeeab7e0f5c07413fe511314443024b078e8cc3 SHA1 8b39947cacf90f95f19d21cd65f00aa15a08aa6d SHA256 7f7fdd6cc35cd182fe5f13338d13f2eb092074f6d04574ab860b967f5739e9a2
-MD5 8399d4e194ff855bba61b0dbbac28827 ChangeLog 871
-RMD160 1eeeab7e0f5c07413fe511314443024b078e8cc3 ChangeLog 871
-SHA256 7f7fdd6cc35cd182fe5f13338d13f2eb092074f6d04574ab860b967f5739e9a2 ChangeLog 871
+EBUILD dialign-t-0.2.2.ebuild 1013 RMD160 c1a1ce5033594d6c594ab992e1d4a061f4976133 SHA1 bab0cd0f33f8d4b62ad09ca82743a59174345724 SHA256 a319254d0a3fd7ffc023016ccec9acd19f332cfa858e8d404d30e3d7ec26fbbd
+MD5 7fd40f305ce39b75e1669d1b9b7752b6 dialign-t-0.2.2.ebuild 1013
+RMD160 c1a1ce5033594d6c594ab992e1d4a061f4976133 dialign-t-0.2.2.ebuild 1013
+SHA256 a319254d0a3fd7ffc023016ccec9acd19f332cfa858e8d404d30e3d7ec26fbbd dialign-t-0.2.2.ebuild 1013
+MISC ChangeLog 1004 RMD160 deb489b4057d5ee9120d466f709f6278e0fb1785 SHA1 f50ec299006fd604332a8656cb51a9ef5be3ac2a SHA256 34a0a80752e30cbbb6fa9da47d2f5f7f11d624e506065f64507deb073040ced1
+MD5 8ebb0c70c43d9ef3d33db097de977159 ChangeLog 1004
+RMD160 deb489b4057d5ee9120d466f709f6278e0fb1785 ChangeLog 1004
+SHA256 34a0a80752e30cbbb6fa9da47d2f5f7f11d624e506065f64507deb073040ced1 ChangeLog 1004
MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
@@ -17,10 +19,6 @@ SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata
MD5 20a9e61f87048ee301d0cb690b890ede files/digest-dialign-t-0.2.1 250
RMD160 9d920eafc14c5c82bb7f59a0589570c52ce5e292 files/digest-dialign-t-0.2.1 250
SHA256 13b80f9063a8294da8e20803cd0ab7ac56a38eb1ba5548885f52000103db8795 files/digest-dialign-t-0.2.1 250
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.1 (GNU/Linux)
-
-iD8DBQFF3PCSz974XjDVpbkRAiDhAJ42ZR2P75LrV1UBX1MDgYYGteoMTwCcCqEv
-jQG9vBKPXB4P/4YvkO6fPZY=
-=pZ0Q
------END PGP SIGNATURE-----
+MD5 4aef30b7f9323da3b90ff74ae0d5ce19 files/digest-dialign-t-0.2.2 250
+RMD160 c5a99abc1a097684c07c53c218233cdb722f1df7 files/digest-dialign-t-0.2.2 250
+SHA256 d872c3e0fc3a1002c6b8100ac22ac3aa8a2462aadfde1e002510e6364d39e854 files/digest-dialign-t-0.2.2 250
diff --git a/sci-biology/dialign-t/dialign-t-0.2.2.ebuild b/sci-biology/dialign-t/dialign-t-0.2.2.ebuild
new file mode 100644
index 000000000000..92b560e9c6ed
--- /dev/null
+++ b/sci-biology/dialign-t/dialign-t-0.2.2.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/dialign-t-0.2.2.ebuild,v 1.1 2007/07/12 16:23:23 je_fro Exp $
+
+inherit multilib toolchain-funcs
+
+MY_P="DIALIGN-T_${PV}"
+DESCRIPTION="An improved algorithm for segment-based multiple sequence alignment"
+HOMEPAGE="http://dialign-t.gobics.de/"
+SRC_URI="http://dialign-t.gobics.de/${MY_P}.tar.gz"
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+RDEPEND=""
+DEPEND="${RDEPEND}"
+S="${WORKDIR}/${MY_P}"
+
+src_compile() {
+ cd ${S}/source
+ emake clean
+ emake \
+ CPPFLAGS="${CFLAGS}" \
+ || die "make failed"
+}
+
+src_install() {
+ DESTTREE="/usr" dobin ${S}/source/dialign-t
+ dohtml ${S}/doc/html/*
+ dodoc ${S}/doc/user_guide*
+ insinto /usr/$(get_libdir)/${PN}/conf
+ doins ${S}/conf/*
+}
+
+pkg_postinst() {
+ ewarn "The configuration directory is"
+ ewarn "${ROOT}usr/$(get_libdir)/${PN}/conf"
+ ewarn "You will need to pass this to ${PN} on every run."
+}
diff --git a/sci-biology/dialign-t/files/digest-dialign-t-0.2.2 b/sci-biology/dialign-t/files/digest-dialign-t-0.2.2
new file mode 100644
index 000000000000..02c3db344270
--- /dev/null
+++ b/sci-biology/dialign-t/files/digest-dialign-t-0.2.2
@@ -0,0 +1,3 @@
+MD5 0de4a7a5403c0aa905c2e283887eb623 DIALIGN-T_0.2.2.tar.gz 1551909
+RMD160 413277d62a3a93c871c6825f06786d9c3c462de6 DIALIGN-T_0.2.2.tar.gz 1551909
+SHA256 31c2aa031c58854f3c22abf44bf731f6cd67eb86cb46db9ce6b4b49c3011db98 DIALIGN-T_0.2.2.tar.gz 1551909