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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-02-27 00:23:49 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-02-27 00:23:49 +0000 |
| commit | 1e34ea36455405aaf66aecb1b69b2c9c42d9cecd (patch) | |
| tree | 391b9474b5119ef24d63ad4e243bb3d00f44c955 /sci-biology/lagan/files | |
| parent | Import from Science overlay, bug 114096 (diff) | |
| download | historical-1e34ea36455405aaf66aecb1b69b2c9c42d9cecd.tar.gz historical-1e34ea36455405aaf66aecb1b69b2c9c42d9cecd.tar.bz2 historical-1e34ea36455405aaf66aecb1b69b2c9c42d9cecd.zip | |
Import from Science overlay
Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64
Diffstat (limited to 'sci-biology/lagan/files')
| -rw-r--r-- | sci-biology/lagan/files/lagan-2.0-gcc4.3.patch | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/sci-biology/lagan/files/lagan-2.0-gcc4.3.patch b/sci-biology/lagan/files/lagan-2.0-gcc4.3.patch new file mode 100644 index 000000000000..a4b1d6808e2f --- /dev/null +++ b/sci-biology/lagan/files/lagan-2.0-gcc4.3.patch @@ -0,0 +1,23 @@ +diff -durr lagan20-orig/src/glocal/score.cpp lagan20/src/glocal/score.cpp +--- lagan20-orig/src/glocal/score.cpp 2009-02-04 15:25:57.698333297 +0000 ++++ lagan20/src/glocal/score.cpp 2009-02-04 15:27:23.894092890 +0000 +@@ -2,7 +2,7 @@ + #include<score.h> + #include<leftinfluence.h> + #include<rightinfluence.h> +-#include<fstream.h> ++#include<fstream> + + extern vector<class Score*> scoreFunctions[1<<(UPSTRANDBITS+DOWNSTRANDBITS+RELPOSBITS)]; + +diff -durr lagan20-orig/src/utils/Glue.cpp lagan20/src/utils/Glue.cpp +--- lagan20-orig/src/utils/Glue.cpp 2009-02-04 15:25:57.702333182 +0000 ++++ lagan20/src/utils/Glue.cpp 2009-02-04 15:27:04.190822654 +0000 +@@ -1,6 +1,7 @@ + #include "MultiSequence.h" + #include "SafeVector.h" + #include "Output.h" ++#include <string.h> + #include <math.h> + #include <assert.h> + #include <fstream> |