diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-03-06 23:05:28 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-03-06 23:05:28 +0000 |
| commit | f421240301cdbe97426a22bfab001151176a6189 (patch) | |
| tree | f9b78696e5293689d2c408273111e78200bbccdb /sci-biology/mira | |
| parent | Version bump #305405 by Walther which also fixes #299962 by Dennis Schridde. (diff) | |
| download | historical-f421240301cdbe97426a22bfab001151176a6189.tar.gz historical-f421240301cdbe97426a22bfab001151176a6189.tar.bz2 historical-f421240301cdbe97426a22bfab001151176a6189.zip | |
Version bump (bugfix release)
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/mira')
| -rw-r--r-- | sci-biology/mira/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/mira/Manifest | 5 | ||||
| -rw-r--r-- | sci-biology/mira/mira-3.0.1.ebuild | 44 |
3 files changed, 54 insertions, 2 deletions
diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog index e3d10b3a5912..a97612370582 100644 --- a/sci-biology/mira/ChangeLog +++ b/sci-biology/mira/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/mira # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.4 2010/02/25 19:00:05 ssuominen Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.5 2010/03/06 23:05:28 weaver Exp $ + +*mira-3.0.1 (06 Mar 2010) + + 06 Mar 2010; Andrey Kislyuk <weaver@gentoo.org> +mira-3.0.1.ebuild: + Version bump (bugfix release) 25 Feb 2010; Samuli Suominen <ssuominen@gentoo.org> mira-3.0.0.ebuild, +files/mira-3.0.0-asneeded.patch: diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest index 062cbe6b4493..70615a4b9337 100644 --- a/sci-biology/mira/Manifest +++ b/sci-biology/mira/Manifest @@ -1,6 +1,9 @@ AUX mira-3.0.0-asneeded.patch 1468 RMD160 5ad66bd3a1861ef984af4fb2b527755fd8901440 SHA1 f17e537e98f77eeaaf7502894f8383dd96c588bc SHA256 17dec784921baccf2c515f7c269209b5cdeb23143b3412e8ad967e74682ee71f DIST mira-3.0.0.tar.bz2 7323621 RMD160 ab95d728a74b101ff49bea80bc5648fa9ebb69b8 SHA1 d736b324115d24270602cdc7066feb928869a916 SHA256 564177fb9777ecdf657640f8e7ea5d7aa0e76b35cebb882ccf77e1714d2fe21d +DIST mira-3.0.1.tar.bz2 7168761 RMD160 f9f08d3c0812330e13ae6e7da00e4889744b8aad SHA1 666f474a31689f4ece78be261d49446f98485483 SHA256 caf593b8216fd8d92bb8e7b0ba251c9a775ef8204164ae6a4b8bd160b22132a2 +DIST mira_3rdparty_06-03-2010.tar.bz2 26882 RMD160 78dad2e93ab436843b8e5275cde9421d84c69143 SHA1 edd1629c7f91d99d3f0f807d45e9b3997d845928 SHA256 fed4ecc77f6bc63ac96864d0e10987129f64613a461715399b24f62ae0802c65 DIST mira_3rdparty_31-01-2010.tar.bz2 23314 RMD160 d1edd2281693db1f7c472390128551c7f45775ab SHA1 0add918747b1d7ff50b81df767e4839463b06f06 SHA256 8b042447e7f6f7de15166c9b667477358a9f78a6c98347bb8eddf278c8a8c50b EBUILD mira-3.0.0.ebuild 1284 RMD160 8f42b6262f349a6e7062021f4ec8cf0af3986308 SHA1 c68947cb1b84e8ea5433f218f77280767f6c9fa6 SHA256 3effc7c86c50ca88ea2471e93283ed41fdc52ab407a3344026adc2fb15cb0a0b -MISC ChangeLog 755 RMD160 9d65f30fb85b0ebaa3960e7ec61d31dedb5e4e6f SHA1 8745bab2a504943948729fd931b91af93fbb3334 SHA256 1b03cb2b9e25bbe0a85f5f4045fa2b65d0a6c3b9da68a80788abb76cbbd48677 +EBUILD mira-3.0.1.ebuild 1288 RMD160 0aa0d863de6c8dc588fc45af2010b7014355725b SHA1 537b44cbe8a2fff8e8a013f9836222663d4f4a65 SHA256 99baec82ee95d1b0e355383a5698ee392deed5ba71ef2b90b07de9c3fad3744b +MISC ChangeLog 882 RMD160 6a248df2444f3718d30d567376d15b160d92127c SHA1 82e84f8fc96487bdbe56ecd7392d85c818cd924e SHA256 a41739b7223904ac6a275253a2c274445565af7e5df2a0802aa67c0a06b73c47 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/mira/mira-3.0.1.ebuild b/sci-biology/mira/mira-3.0.1.ebuild new file mode 100644 index 000000000000..ab4263fb42c9 --- /dev/null +++ b/sci-biology/mira/mira-3.0.1.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.1.ebuild,v 1.1 2010/03/06 23:05:28 weaver Exp $ + +EAPI="2" + +MIRA_3RDPARTY_PV="06-03-2010" + +inherit base autotools + +DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" +HOMEPAGE="http://www.chevreux.org/projects_mira.html" +SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2 + mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +IUSE="doc" +KEYWORDS="~amd64 ~x86" + +CDEPEND=">=dev-libs/boost-1.35.0" +DEPEND="${CDEPEND} + dev-libs/expat + doc? ( >=app-text/texlive-core-2009 )" +RDEPEND="${CDEPEND}" + +src_prepare() { + find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die + epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch + AT_M4DIR="config/m4" eautoreconf +} + +src_compile() { + base_src_compile + if use doc; then emake -C doc clean docs || die; fi +} + +src_install() { + einstall || die + dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL + find doc/docs/man -type f | xargs doman + find doc/docs/texinfo -type f | xargs doinfo + dobin "${WORKDIR}"/3rdparty/{sff_extract,*.pl} +} |