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authorJustin Lecher <jlec@gentoo.org>2015-03-29 14:05:59 +0000
committerJustin Lecher <jlec@gentoo.org>2015-03-29 14:05:59 +0000
commita8961532ec6c0f16a454b162441c3d106cc44978 (patch)
treef979b5dfa9502437850151af58475a6228dd7d67 /sci-biology/phylip
parentDisable svg support as it relies on obsolete libsvg-cairo (#537918) (diff)
downloadhistorical-a8961532ec6c0f16a454b162441c3d106cc44978.tar.gz
historical-a8961532ec6c0f16a454b162441c3d106cc44978.tar.bz2
historical-a8961532ec6c0f16a454b162441c3d106cc44978.zip
Version BUmp
Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
Diffstat (limited to 'sci-biology/phylip')
-rw-r--r--sci-biology/phylip/ChangeLog10
-rw-r--r--sci-biology/phylip/Manifest32
-rw-r--r--sci-biology/phylip/phylip-3.67.ebuild6
-rw-r--r--sci-biology/phylip/phylip-3.69-r1.ebuild10
-rw-r--r--sci-biology/phylip/phylip-3.69.ebuild6
-rw-r--r--sci-biology/phylip/phylip-3.696.ebuild54
6 files changed, 96 insertions, 22 deletions
diff --git a/sci-biology/phylip/ChangeLog b/sci-biology/phylip/ChangeLog
index f2904d8ede98..ca6be6ae0a87 100644
--- a/sci-biology/phylip/ChangeLog
+++ b/sci-biology/phylip/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/phylip
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/ChangeLog,v 1.41 2013/03/11 16:42:07 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/ChangeLog,v 1.42 2015/03/29 14:05:50 jlec Exp $
+
+*phylip-3.696 (29 Mar 2015)
+
+ 29 Mar 2015; Justin Lecher <jlec@gentoo.org> +phylip-3.696.ebuild,
+ phylip-3.67.ebuild, phylip-3.69-r1.ebuild, phylip-3.69.ebuild:
+ Version BUmp
11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest
index 82c060424c30..f444e32612f2 100644
--- a/sci-biology/phylip/Manifest
+++ b/sci-biology/phylip/Manifest
@@ -1,18 +1,32 @@
-----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
AUX README.Gentoo 643 SHA256 d8a737f2ca6e0366fcebb96fbc9e12200b6402fea4c4f71696f4d9175980dfbd SHA512 63ec15ce2788171e5351977bae21e11a7c8609eeed4893849fabc909f0c6713033e253768ea3f485245456a9083ad4aa613e2503ebb4eb71f7b670f1af593f2a WHIRLPOOL 671a6aa44cae7054d402ac111a572145b705052e6d084687a188fe451c8c6f30fd276f8abb89d40bf150be8d119616f696ccaa59fb3ed9177040eae8b3f8b80e
DIST phylip-3.67.tar.gz 1467526 SHA256 089f31c0519b1af162628c02d4ff78570b42cd261f39b87c6406733f2f759b5d
DIST phylip-3.69.tar.gz 1511935 SHA256 27947ce8dab4416e4823db38b3d1b0bf17bc545b6907cf09dcf6177df94c1a8f SHA512 e36d12bfe597896b4298c1d0e3b0b7bd783573dc03e861b9472d8284391b2339cb3fb58eb6580298724bbd516127b68925815455514f939da9272fcfed7e229d WHIRLPOOL 25c45ac2a96278eaef9a62aecc367aa32a894df0cd5aff9b626abd013ecbe52f9d4bdaf7805ba5c5d8699f9a74d3d26cfe6e1c1b22960c03061171625d16415f
-EBUILD phylip-3.67.ebuild 1440 SHA256 738f79642a25e77ad3481214269d751154b6fe2f5abd691d1dbc5ee7553556b9 SHA512 1bcbc890b8743ab31df74928c43b62eeea3fd53a821182fdd401922cff159d0a20b94521fe22de998280bf3144a25117d71bcaa5f531fc28bf69bfb18996b44c WHIRLPOOL 1b6681546ea0c1232d0dff7ec965f52b9724b0db61d1d82c618d5304ee10af4074eabe003353897517a62d4cb140aabaa02fc5e354e81e3a1057022e4d1bc108
-EBUILD phylip-3.69-r1.ebuild 1252 SHA256 7e51e62e314c66c504c6b82d201d0a02f67844dec283a08711fbcd96e2c3e366 SHA512 7b44e4b1dafc2b52f7c2cee4aa75e81e0c574ae80cd0133f6d169c8812e09b532568a5953170be3e67aa6cde89dcd87f1c3914efacd5520f32848ef2879bb369 WHIRLPOOL 4ec3ed92ffdeb68423d9ff714d77970f6a8bbc5d3009c80096aa3a9c874ff5720ec9481c0d7dbc0c6d21cfc8cbaf7f802c99768549aaa400549ce331ce4c42a6
-EBUILD phylip-3.69.ebuild 1477 SHA256 cd11aa90972ef7eab59324c2a5aec86db72677d7ec678d14636a2d604c3797ea SHA512 1ce1bf170042246a8c93eb8540ed27808bfb0efae988e36fb755f5e8f07ed981fd0f38b309f79de57e253cedd5af8f7d1551548f2bbc7f908bb6707b08e3c2bb WHIRLPOOL 2c8fa2dfa98ffc3429e33330ae8b30edb29275d7bbc97cb09a3a45013ce8a90c3bf618d2a16d09545186d90bb6483d53972a31e66845d7bc3f61aedf050baf6d
-MISC ChangeLog 6429 SHA256 f21b26020fcb9890242290649a4fe12ad8f983f8a98de0f1780095029a8e3c0b SHA512 1fd2a52a4cce53b4d54ae850171667930896aa42f4325c7e1aa4f781a55971eab6757f68481349274cd0c0c2935169f03e3c3d59fdb0e5b7e4089c768b0647fe WHIRLPOOL ca600b579aefff656d6eb56cb782a8f3f07ae06853c9755b0c0fbf70d2c9f02b88c000fb9522e6f11d9220bc943a9b618696e65bfc4d31aaaadfa3d03754b322
+DIST phylip-3.696.tar.gz 3955721 SHA256 cd0a452ca51922142ad06d585e2ef98565536a227cbd2bd47a2243af72c84a06 SHA512 711a9a34be72b0f63c746733cd1384f091b7cc597dbd9a40c130e074efbf0a0ecc30e5a6b3452bb73dc69cddbdae2fc07d1c0a68f0be207471eab73ab876c6be WHIRLPOOL 7d4d4bd703ecd84b7570c937484c15f52643221ca178fb494f81b18991149fc2f8d1c8c5b99b57e20ada0bef7e93dcb15c55410f8f1012b1656419fab19b3cab
+EBUILD phylip-3.67.ebuild 1432 SHA256 d943ae41c07d66149c41d44d5cb541d6ffbef6b249ea626c3c022873134f91c8 SHA512 61c3fa6d2ab8d87153cab17621e1ce6250be32a1b7909fc92b22d383863e56105b738fcd73c2b7740c82cc64a4568d85ef589ff6956a56e1945e1c18b416a83a WHIRLPOOL d7b69ba5b0a1e8772816873a22d731f68193b2a5b51ea920393c605e5b1d15753fe5c77edb9066d9640d230fb906bd25fca6ec59438adc954b074611cabe3161
+EBUILD phylip-3.69-r1.ebuild 1259 SHA256 b569eaf4e6b589b5c3f58b49ed9e0e29002300f5eac8539e1c3f7c3da6729d7d SHA512 221a1a18ab91f984d9e3ca3c360214b3abc4140cf92da204e777570ac08aee8ec4dbe31353ff256b863fde598587e63ec389f6e73cb150ccebd7889d506a93d7 WHIRLPOOL a30b8350b37a28c7b4835855cc554f1f97a3f08a32d00483459c24f7ee7e3792c954022c799bf1539a45bbd6131c7564baed37316465c5a5bdb2edf97819f169
+EBUILD phylip-3.69.ebuild 1468 SHA256 83ec5bf8253997c088603b1b8de28eea11d63a1c0b81cf3fe12d52dc86d1132b SHA512 cd1acfb9d7f2cc7b96774981b10d2045d04fba033a852d78da85711359cdd347087fd3408d9f41a9a27a4076b7f58d6938fa600c6794d6628e856a19cda8248f WHIRLPOOL 5394a2b20a5c79a9cd3eb26e271bc2cc7a16deb3a6162b7b8f90d6448b6add6ec1f63b8a061a3a9159c44cbbea404f115f76d5ff384667075ec2cea94f7b0f72
+EBUILD phylip-3.696.ebuild 1207 SHA256 e724018e03d0834a1c09d5528265e3e8cc069dade85832fb924267f79d6f0a1e SHA512 7efe504111d20b4ca2acb738e441f36fafe4d587630bf499dc8b7e490846d29f00c27d92d3bb1844e92b74a770382aa9562acf3fcaea2a3231cad5e1cb2861f8 WHIRLPOOL c4cb026b41ebb44411a67b63a7b35718cfb4201c433a1673741bf4da124ba7950166399c35d89cf0f6e73518ac142e226657e0924748acc3579d27455a22212a
+MISC ChangeLog 6608 SHA256 a95f1f2de634c8433cdbe193c8dcd10086b9a3033fc645fe03efb968bce68432 SHA512 781ec686b28a42bb67c0b2f077a778c500d87a61abde7b0aabc66fa44f31e43e97f8f215ef9a0bba021931ef5d29842943b1753bba9702e830e04bce876460f7 WHIRLPOOL bd27b20209d7520c3d22549f93a31c95057d118f4572c53af53d1149d53ac1f0d9fb04a690530e37d501e9c4278cc05c0d7ba77235bd18dae8e4078c4fb6fd36
MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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+Version: GnuPG v2.0
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diff --git a/sci-biology/phylip/phylip-3.67.ebuild b/sci-biology/phylip/phylip-3.67.ebuild
index 4a1cd25a7e43..3d58114fed3d 100644
--- a/sci-biology/phylip/phylip-3.67.ebuild
+++ b/sci-biology/phylip/phylip-3.67.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2008 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.67.ebuild,v 1.6 2008/06/29 08:24:01 tove Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.67.ebuild,v 1.7 2015/03/29 14:05:50 jlec Exp $
inherit toolchain-funcs
-DESCRIPTION="PHYLIP - The PHYLogeny Inference Package"
+DESCRIPTION=" The PHYLogeny Inference Package"
LICENSE="freedist"
HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
diff --git a/sci-biology/phylip/phylip-3.69-r1.ebuild b/sci-biology/phylip/phylip-3.69-r1.ebuild
index 366df64730b9..48071ce6bdcc 100644
--- a/sci-biology/phylip/phylip-3.69-r1.ebuild
+++ b/sci-biology/phylip/phylip-3.69-r1.ebuild
@@ -1,12 +1,12 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.69-r1.ebuild,v 1.1 2013/02/17 11:28:00 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.69-r1.ebuild,v 1.2 2015/03/29 14:05:50 jlec Exp $
EAPI=5
inherit toolchain-funcs
-DESCRIPTION="PHYLIP - The PHYLogeny Inference Package"
+DESCRIPTION=" The PHYLogeny Inference Package"
HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
@@ -28,7 +28,7 @@ src_prepare() {
-e "s/DC = cc/DC = $(tc-getCC)/" \
-e "/ -o /s:\(\$(CC)\):\1 ${LDFLAGS}:g" \
-i Makefile || die "Patching Makefile failed."
- mkdir ../fonts
+ mkdir ../fonts || die
}
src_compile() {
@@ -36,7 +36,7 @@ src_compile() {
}
src_install() {
- cd "${WORKDIR}/${P}"
+ cd "${WORKDIR}/${P}" || die
mv exe/font* fonts || die "Font move failed."
mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
diff --git a/sci-biology/phylip/phylip-3.69.ebuild b/sci-biology/phylip/phylip-3.69.ebuild
index b11f4d3a84b3..1bd640e92f07 100644
--- a/sci-biology/phylip/phylip-3.69.ebuild
+++ b/sci-biology/phylip/phylip-3.69.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.69.ebuild,v 1.3 2010/01/01 21:38:17 fauli Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.69.ebuild,v 1.4 2015/03/29 14:05:50 jlec Exp $
inherit toolchain-funcs
-DESCRIPTION="PHYLIP - The PHYLogeny Inference Package"
+DESCRIPTION=" The PHYLogeny Inference Package"
LICENSE="freedist"
HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
diff --git a/sci-biology/phylip/phylip-3.696.ebuild b/sci-biology/phylip/phylip-3.696.ebuild
new file mode 100644
index 000000000000..3a086897cfbe
--- /dev/null
+++ b/sci-biology/phylip/phylip-3.696.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.696.ebuild,v 1.1 2015/03/29 14:05:50 jlec Exp $
+
+EAPI=5
+
+inherit toolchain-funcs
+
+DESCRIPTION=" The PHYLogeny Inference Package"
+HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
+SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD-2"
+IUSE=""
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+
+RDEPEND="x11-libs/libXaw"
+DEPEND="${RDEPEND}
+ x11-proto/xproto"
+
+S="${WORKDIR}/${P}/src"
+
+src_prepare() {
+ mv Makefile.unx Makefile || die
+ sed \
+ -e "/ -o /s:\(\$(CC)\):\1 ${LDFLAGS}:g" \
+ -i Makefile || die "Patching Makefile failed."
+ mkdir ../fonts || die
+}
+
+src_compile() {
+ emake -j1 \
+ CC="$(tc-getCC)" \
+ DC="$(tc-getCC)" \
+ CFLAGS="${CFLAGS} -Wno-unused-result" \
+ all put
+}
+
+src_install() {
+ cd "${WORKDIR}/${P}" || die
+
+ mv exe/font* fonts || die "Font move failed."
+ mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
+
+ dobin exe/*
+
+ dodoc "${FILESDIR}"/README.Gentoo
+
+ dohtml -r phylip.html doc
+
+ insinto /usr/share/${PN}/
+ doins -r fonts
+}