sci-biology/seaview: Version Bump imported from sci overlay, prepared by Martin Mokrejs, #351005; fixes also compilation with gcc47, #424727

Package-Manager: portage-2.2.0_alpha115/cvs/Linux x86_64

3 files changed, 92 insertions, 12 deletions

diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
index eb1631093b72..1e36f6455bb6 100644
--- a/sci-biology/seaview/ChangeLog
+++ b/sci-biology/seaview/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/seaview
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.40 2011/03/20 20:02:27 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.41 2012/07/04 10:09:26 jlec Exp $
+
+*seaview-4.3.3 (04 Jul 2012)
+
+  04 Jul 2012; Justin Lecher <jlec@gentoo.org> +seaview-4.3.3.ebuild:
+  Version Bump imported from sci overlay, prepared by Martin Mokrejs, #351005;
+  fixes also compilation with gcc47, #424727
 
   20 Mar 2011; Justin Lecher <jlec@gentoo.org> seaview-4.2.5.ebuild,
   seaview-4.2.12.ebuild:
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index 8324127287de..588225f20e1d 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -1,16 +1,19 @@
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+DIST seaview_4.2.12.tar.gz 302803 SHA256 fc812daee9570be38b39e2f08dac78ca4d3a0adefb801f79f1d15e71d60f9b6a SHA512 1989e101c8dde925b9ddd5c9ac534cf4251c9e75806a885f04acec524df49178a5098aa0dd254c901e3035b2c0cdd68a205a06b004ffe41c29a8bfb5e348a665 WHIRLPOOL b18f78bbc6a94436de23920009fbe1274f97d2ebcb9abee711a93dc887935cca23172d67e86c71d1b5f46052fc361b652e3ca7a9f3854220fe5ab3d80a86b561
 DIST seaview_4.2.5.tar.gz 319110 RMD160 2aa82be247367790e1b84e4526ac92a98c126551 SHA1 e3ade6b2078aa1b617aad10fb124fe0309084638 SHA256 1d5d555a1afcec0218db99a132942edfdfcb05b7bb93de6c124d7d30315677c9
-EBUILD seaview-4.2.12.ebuild 1806 RMD160 6e7fed30b1f3a0124e340d6246a30bd077f8674d SHA1 52cecaeaf988089108be00d101daccad03482c12 SHA256 c5a1d407448ca489bc9a022334a55734cdd58f483a228a27a0b3e441d76a4e58
-EBUILD seaview-4.2.5.ebuild 1795 RMD160 a4e31046fa7b71425ab417bd93d9d8ab3548a280 SHA1 9c68a73d62c827fc586df00db285acb32dd5fc29 SHA256 c02759961c4580ab60b0c4b78f0e9fcbda2f0042922b6f3d66a743291d1e245d
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+DIST seaview_4.3.3.tar.gz 313375 SHA256 632286397b4959ed8e379d6a6c57715a01634a81596ed681bcd87e14e10684b4 SHA512 cc3eb433c807b3482a4e883ffc96e00b8e04b6208561d3e7c7409da25e2171e5db7a0caa252070da904bd672d68f151967133ae0801fe2c6ffdee0d9af7ec8c3 WHIRLPOOL 0310a5e707c7314e3038a7e9467fa854868b691e7f4a82a75808ddf9197c8a98030414be67649c8b6def31a350899faa615c5d38a8f69966dc60080e51964915
+EBUILD seaview-4.2.12.ebuild 1806 SHA256 c5a1d407448ca489bc9a022334a55734cdd58f483a228a27a0b3e441d76a4e58 SHA512 65cb149d937c177606082f57c2f4e5a4d164ca4bb04f9fd646fc7428e417d1d6beed66263eb9dc09f9509dce91f6e7cdb8bd6327de3747fea358ec9b45a3292a WHIRLPOOL ac3b6afc19d5758e24de94d86c93ccbc4c8dd6cc3eab66e9fc0427b075c4390465a1f21422a5a943c1eb4786c5b8788d23143c070277a37c4adbab95b66d3cb3
+EBUILD seaview-4.2.5.ebuild 1795 SHA256 c02759961c4580ab60b0c4b78f0e9fcbda2f0042922b6f3d66a743291d1e245d SHA512 0af02cfbf7869f8a0796074d89ee5d0269b22b94b42239f80392166e3ff0dcdcfaa4b3210d3c8fe54918c8c2029d98f11f58c7274303e0303ab3ca146615d094 WHIRLPOOL 6b4b79e1cb49b3dc88c11c054c8fc9167879ad45df3a4f47b5c593fe928a1c9dca9015870a7430041f9336f5341aa71cabf1bcc2a8868ca82a494cf76f44e606
+EBUILD seaview-4.3.3.ebuild 1948 SHA256 3b1366720c08ecc35aef48e1cbdf4839e4e6b62289686adb546314bd6d7c2e7c SHA512 db25ebbcb8b0ecd3059caebab72dd37539cf126f84114d77513fdb8146606006f7b21db1c105e0816f817a4144df2d2c2ae662d09c7810b75b67160b934e9286 WHIRLPOOL db98581e8d7e6396e6651f0a9f944b72d38c53c9221c7face81ec50388d3e3bc2bf674e7a85cd8b3dda182d93e128bc691b4ee01633900afa783cf20a4b1b045
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diff --git a/sci-biology/seaview/seaview-4.3.3.ebuild b/sci-biology/seaview/seaview-4.3.3.ebuild
new file mode 100644
index 000000000000..5f3ab43a269e
--- /dev/null
+++ b/sci-biology/seaview/seaview-4.3.3.ebuild
@@ -0,0 +1,71 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-4.3.3.ebuild,v 1.1 2012/07/04 10:09:26 jlec Exp $
+
+EAPI=4
+
+inherit base eutils multilib toolchain-funcs
+
+DESCRIPTION="A graphical multiple sequence alignment editor"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
+SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="+xft"
+
+DEPEND="
+	x11-libs/fltk:1
+	xft? (
+		x11-libs/libXft
+		x11-libs/fltk:1[xft] )"
+RDEPEND="${DEPEND}
+	sci-biology/clustalw
+	|| ( sci-libs/libmuscle sci-biology/muscle )
+	sci-biology/phyml"
+
+S="${WORKDIR}/${PN}"
+
+src_prepare() {
+	# respect CXXFLAGS (package uses them as CFLAGS)
+	sed \
+		-e "s:^CXX.*:CXX = $(tc-getCXX):" \
+		-e "s:\$(OPT):${CXXFLAGS}:" \
+		-e "s:^OPT:#OPT:" \
+		-e "s:^FLTK = /usr/include:FLTK = /usr/include/fltk-1:" \
+		-e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cflags):" \
+		-e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \
+		-e "s:^USE_XFT:#USE_XFT:" \
+		-e "s:^#HELPFILE:HELPFILE:" \
+		-e "s:/usr/share/doc/seaview/seaview.htm:/usr/share/seaview/seaview.htm:" \
+		-e "s:^#PHYMLNAME:PHYMLNAME:" \
+		-i Makefile || die "sed failed while editing Makefile"
+
+	if use xft; then
+		sed \
+			-e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $(pkg-config --cflags xft):" \
+			-e "s:-lXft:$(pkg-config --libs xft):" \
+			-i Makefile || die "sed failed while editing Makefile to enable xft"
+	else
+		sed -i -e "s:-lXft::" Makefile || die
+	fi
+	cd FL || die
+	ln -sf . FL
+	base_src_prepare
+}
+
+src_install() {
+	dobin seaview
+
+	# /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile
+	insinto /usr/share/seaview
+	doins example.nxs seaview.html
+
+	insinto /usr/share/seaview/images
+	doins seaview.xpm
+
+	make_desktop_entry seaview Seaview
+
+	doman seaview.1
+}