New upstream version.

Package-Manager: portage-2.1.2.2

6 files changed, 104 insertions, 4 deletions

diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog
index a3fa8706e60a..288200a888f3 100644
--- a/sci-biology/prosite/ChangeLog
+++ b/sci-biology/prosite/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/prosite
-# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.94 2006/12/12 20:11:35 ribosome Exp $
+# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.95 2007/04/11 01:13:26 ribosome Exp $
+
+*prosite-20.9 (11 Apr 2007)
+
+  11 Apr 2007; Olivier Fisette <ribosome@gentoo.org> +prosite-20.9.ebuild:
+  New upstream version.
 
 *prosite-20.1 (12 Dec 2006)
 
diff --git a/sci-biology/prosite/files/digest-prosite-20.9 b/sci-biology/prosite/files/digest-prosite-20.9
new file mode 100644
index 000000000000..3e8225325be7
--- /dev/null
+++ b/sci-biology/prosite/files/digest-prosite-20.9
@@ -0,0 +1,3 @@
+MD5 bdec0ea9bcdad54b0d0fe51387124158 prosite-20.9.tar.bz2 5108913
+RMD160 8e68f488d4112809f54e1d559253c8bbad34ee53 prosite-20.9.tar.bz2 5108913
+SHA256 f00fded0cd67ea29ef0d40f1a1ef16ecb67b717acd7054a903355ad246478e02 prosite-20.9.tar.bz2 5108913
diff --git a/sci-biology/prosite/prosite-20.9.ebuild b/sci-biology/prosite/prosite-20.9.ebuild
new file mode 100644
index 000000000000..5c7f80880cc3
--- /dev/null
+++ b/sci-biology/prosite/prosite-20.9.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-20.9.ebuild,v 1.1 2007/04/11 01:13:26 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+LICENSE="swiss-prot"
+HOMEPAGE="http://ca.expasy.org/prosite"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )"
+
+src_compile() {
+	if use emboss; then
+		mkdir PROSITE
+		echo
+		einfo "Indexing PROSITE for usage with EMBOSS."
+		EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \
+			"Indexing PROSITE failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins *.{doc,dat,lis} || die "Installing raw database failed."
+	fi
+	dodoc *.txt || die "Documentation installation failed."
+	dohtml *.htm || die "HTML documentation installation failed."
+	insinto /usr/share/doc/${PF}
+	doins *.pdf || die "PDF documentation installation failed."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/PROSITE
+		doins PROSITE/* || die "Installing EMBOSS data files failed."
+	fi
+}
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index a4f274599604..f53ae8f0fd79 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
-# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.81 2006/12/12 20:14:51 ribosome Exp $
+# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.82 2007/04/11 01:15:11 ribosome Exp $
+
+*rebase-704 (11 Apr 2007)
+
+  11 Apr 2007; Olivier Fisette <ribosome@gentoo.org> +rebase-704.ebuild:
+  New upstream version.
 
 *rebase-612 (12 Dec 2006)
 
diff --git a/sci-biology/rebase/files/digest-rebase-704 b/sci-biology/rebase/files/digest-rebase-704
new file mode 100644
index 000000000000..271b80e2bcff
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-704
@@ -0,0 +1,3 @@
+MD5 8a0f890d047b84ceda8f6668aff59537 rebase-704.tar.bz2 184563
+RMD160 5aad3fa03f17bf211d6097e795f81610d9045bc3 rebase-704.tar.bz2 184563
+SHA256 8d9792b315f07a62684962b4af79495b8c12397c49769a023d4ba79e17b851dd rebase-704.tar.bz2 184563
diff --git a/sci-biology/rebase/rebase-704.ebuild b/sci-biology/rebase/rebase-704.ebuild
new file mode 100644
index 000000000000..b313ec775813
--- /dev/null
+++ b/sci-biology/rebase/rebase-704.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-704.ebuild,v 1.1 2007/04/11 01:15:11 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
+			-protofile proto.${PV} || die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV} || die \
+			"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup} || die \
+			"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins embossre.equ || die "Failed to install enzyme prototypes file."
+	fi
+}