Version Bump

Package-Manager: portage-2.2.0_alpha37/cvs/Linux x86_64

3 files changed, 65 insertions, 5 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 8fbe8fab9318..bbf1bdb944ed 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.104 2011/04/30 11:00:42 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.105 2011/06/01 06:38:00 jlec Exp $
+
+*rebase-1106 (01 Jun 2011)
+
+  01 Jun 2011; Justin Lecher <jlec@gentoo.org> +rebase-1106.ebuild:
+  Version Bump
 
 *rebase-1105 (30 Apr 2011)
 
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index bc9afa1670fe..5218c0691b97 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -5,16 +5,18 @@ DIST rebase-1006.tar.xz 21163928 RMD160 98fd3a9d8a82a663e420fc2948de0280b44d0f1c
 DIST rebase-1103.tar.xz 18171976 RMD160 8d96576b56112ebe90a8bf4e8f5a45164573e9f5 SHA1 02bc451d06c4b821b13d4ee4e9fcecc0bc59e2a5 SHA256 241b8ee9e8840b33545996e39529e9ec1cf54723f5c599a050907da8f5f837cf
 DIST rebase-1104.tar.xz 18310220 RMD160 a9279e27c85092decd0572087c5f941bea058ff8 SHA1 fefdd21f06ab32d7bbbf8d6a6e3113af0b499bdd SHA256 9240405bd18d74a4fabc398eacc463a2e9ef7334ca8cde23f9980e8c7558cb34
 DIST rebase-1105.tar.xz 18584656 RMD160 86811fb9135452475cc5e275fd5df2025a41ce23 SHA1 d513a2210963de0a98569d79c4c8a2a2fbe2bc3f SHA256 e10365a15e280f5166104149df437683904bf0e2eef613823f3768b4da8ff17d
+DIST rebase-1106.tar.xz 19673448 RMD160 3fe887c10755f84d9c776ba8b2f761d97fcddc0c SHA1 7d48b5e2b09a6b2715c0a4352e4acadeee99bb00 SHA256 d9a41abaf800b54e813131dfd016d6079a4c08ac0d8eeeac5784092b45efd7cd
 EBUILD rebase-1006.ebuild 1508 RMD160 5ce7f179e01935bb02605e545b9f5484c2cac0fc SHA1 e13678167b2e6d6dace889133fcd93ce93082c48 SHA256 439ee7b7f5505d085feb28d39aab5b46f7ef51d67439c6d509a3242079bd4527
 EBUILD rebase-1103.ebuild 1565 RMD160 0e4e4761845b67721cbff8702691dc0863aaf8cc SHA1 d949baf0e584399fdaf3ebf46d00d011c363c3c2 SHA256 89653974413b5b4b5a5c9bad51df656923ca61a82909cdc55bbdb34475077a18
 EBUILD rebase-1104.ebuild 1565 RMD160 2c7e26f7729ae13235587fce188ece362abfb396 SHA1 7a13c6844a637bcffd798a312ea49e09bef60cb9 SHA256 8b5d2f213ba4bbe29c0d420fde7bdfee5ef51eb5c7043ef602861ebb0a28222e
 EBUILD rebase-1105.ebuild 1565 RMD160 493273505acd3724915108aea793fa02d4790249 SHA1 00d231f7df1b1cbc78013b33e162a91aeb79f218 SHA256 114c2a724619e7838c867694f96c9ac08c209531d1f44fb8d9a60cab4db3c285
-MISC ChangeLog 13728 RMD160 41b9a386fd6cf3f7c474662606beac31a2251934 SHA1 7b0f6109a373844965a4a683340082e40d068d5a SHA256 d57853e329226dc57ca601734f41f42e14152c7f79c8602921ae31b8047b283c
+EBUILD rebase-1106.ebuild 1565 RMD160 43d9cb1588905eb3819d32e75b3896f70b22523d SHA1 5a765fd49e592b8accfc8bd121593b27231e5522 SHA256 3d487e82d570df0fac22bdb854c1d8e7ca1eea0e56622c1bddd80eccec3835cc
+MISC ChangeLog 13840 RMD160 be1d4fec447c2432cd15b02224eea23d7c281575 SHA1 78481f1c56b2576d3471590fb1635a7b9d21d69c SHA256 0b6b8233e2ba55d1dd054c21f29c23480c03f02d23d12d1be84f8879315115dd
 MISC metadata.xml 811 RMD160 f1dd0a77488312defebf403ac55aa57e4d15bcdc SHA1 6fefbf2aa855c5aba0ff15dfb9c3ea90bd104482 SHA256 65603e5b252a8afc1f9e2a5db69d8dcac525f6dc669cbe1eb23bc47624c8bde2
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diff --git a/sci-biology/rebase/rebase-1106.ebuild b/sci-biology/rebase/rebase-1106.ebuild
new file mode 100644
index 000000000000..7a90c2eb8b59
--- /dev/null
+++ b/sci-biology/rebase/rebase-1106.ebuild
@@ -0,0 +1,53 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1106.ebuild,v 1.1 2011/06/01 06:38:00 jlec Exp $
+
+EAPI="3"
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="
+	mirror://gentoo/${P}.tar.xz
+	http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV} || die \
+				"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup} || die \
+				"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ \
+				|| die "Failed to install enzyme prototypes file."
+	fi
+}