Bumping to latest version which contains several new features.

Package-Manager: portage-2.1.3.15

6 files changed, 81 insertions, 29 deletions

diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
index 07f83385f0d9..2bc3722d2c1f 100644
--- a/sci-biology/seaview/ChangeLog
+++ b/sci-biology/seaview/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/seaview
 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.10 2007/03/25 02:58:30 kugelfang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.11 2007/10/21 04:34:16 je_fro Exp $
+
+*seaview-20070919 (21 Oct 2007)
+
+  21 Oct 2007; <jeff@gentoo.org> seaview-20041220.ebuild,
+  seaview-20060213.ebuild, +seaview-20070919.ebuild:
+  Bumping to latest version which contains several new features.
 
   25 Mar 2007; Danny van Dyk <kugelfang@gentoo.org> seaview-20041220.ebuild,
   seaview-20060213.ebuild:
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index 3e9388e4fc98..7e5ddb526ac0 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -1,20 +1,22 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST seaview-20041220.tar.bz2 115192 RMD160 a557e906c9115db74ddfdecc4fdc647df336b3c3 SHA1 f237a7ccc0ba7e69c6b61a6aaac4ae4d0be12c71 SHA256 045b09e08d49f9630243e3bc19d8cc630874e1c4f64a1d91997e76e5af2cd6d7
 DIST seaview-20060213.tar.bz2 114995 RMD160 c3409b5e06f15e983db4912812381ee5d5894ea9 SHA1 6dffddf934e82eb155e47dcd58f9a5612511fcff SHA256 be058f53f07cec46978f10ddad8794bbe79762cf089d18b5cbe7cb6ed15c54fc
-EBUILD seaview-20041220.ebuild 1252 RMD160 796c3c1e87e6e6d045c636c5b9f46c006fefdbab SHA1 3d3dc29ce2ed97177fce7c7cbabfc9b38a0cf09f SHA256 3f7f4696d6f8b0a31d001348668b340b0c061cb1b5ee8bba21b43ea29fd559c0
-MD5 0a7c5d307616c678a1ae66aaaf8cdf74 seaview-20041220.ebuild 1252
-RMD160 796c3c1e87e6e6d045c636c5b9f46c006fefdbab seaview-20041220.ebuild 1252
-SHA256 3f7f4696d6f8b0a31d001348668b340b0c061cb1b5ee8bba21b43ea29fd559c0 seaview-20041220.ebuild 1252
-EBUILD seaview-20060213.ebuild 1279 RMD160 46c272125a1017dc87b781542a1a01cf316f6b88 SHA1 7e625694afd1d28f793da360d5d37a9dc40639ec SHA256 df51210b442efad6e33a5aec8adc97e62a65735a63208b5838d3d453c617c108
-MD5 24cce21a5ee705fdf1cdf6025e885419 seaview-20060213.ebuild 1279
-RMD160 46c272125a1017dc87b781542a1a01cf316f6b88 seaview-20060213.ebuild 1279
-SHA256 df51210b442efad6e33a5aec8adc97e62a65735a63208b5838d3d453c617c108 seaview-20060213.ebuild 1279
-MISC ChangeLog 2373 RMD160 cc5e305ded1453b9e2decb88936b0bc19369d459 SHA1 480b8787713f65108b196699aa4f83db76d42d64 SHA256 07b4dc11010e2954567314a33dff319c46d1e686472d0fab638ead48a35af71e
-MD5 8b6e9f661d7e8fe62f16e464395269ab ChangeLog 2373
-RMD160 cc5e305ded1453b9e2decb88936b0bc19369d459 ChangeLog 2373
-SHA256 07b4dc11010e2954567314a33dff319c46d1e686472d0fab638ead48a35af71e ChangeLog 2373
+DIST seaview-20070919.tar.bz2 129867 RMD160 a930e5286c8e2c82dd1b7d33f15682b525a83f4f SHA1 db2d36e6ef7cd446caf79cb93258c3b72b067248 SHA256 4c2b3d1e051f72194dc1b7fc742ed92c97f86926615fbd768b2f2e3cff7fea33
+EBUILD seaview-20041220.ebuild 1253 RMD160 8b9147e6bb75d2b45a70dd1ad0b1d8d6d50c426d SHA1 21932a306ddd84d5b1c8234205c7aae448a3fe1d SHA256 ae0d5dfdec133f3c7eeec6bfad3c97b242242b7c8f2fa5d41bef871594de6222
+MD5 b35850b39b6c203aaaecd7efd22ec2fc seaview-20041220.ebuild 1253
+RMD160 8b9147e6bb75d2b45a70dd1ad0b1d8d6d50c426d seaview-20041220.ebuild 1253
+SHA256 ae0d5dfdec133f3c7eeec6bfad3c97b242242b7c8f2fa5d41bef871594de6222 seaview-20041220.ebuild 1253
+EBUILD seaview-20060213.ebuild 1280 RMD160 4d28f7ee55983ca05f0564a07ed573cb7c314a01 SHA1 c96af5ed52a80e11de9585bafa6a135619973389 SHA256 75c63e4db29157a12a4ae7b362983628cb03d547464f20be3aba0468a8a91ca9
+MD5 2eddbd331e5014cfcbf2dfae860e8b2e seaview-20060213.ebuild 1280
+RMD160 4d28f7ee55983ca05f0564a07ed573cb7c314a01 seaview-20060213.ebuild 1280
+SHA256 75c63e4db29157a12a4ae7b362983628cb03d547464f20be3aba0468a8a91ca9 seaview-20060213.ebuild 1280
+EBUILD seaview-20070919.ebuild 1264 RMD160 c42a1ea574707ccda17241920f7d0e355e5c6cef SHA1 f83d90edb2a4ffa538b1e6d98e45750be0e12abe SHA256 dcfa62134259ced5590571b26f24f8bcfd6d16d96d4dddda8312da42829842b3
+MD5 f96b934e223c26f11f5fb7de310bcc81 seaview-20070919.ebuild 1264
+RMD160 c42a1ea574707ccda17241920f7d0e355e5c6cef seaview-20070919.ebuild 1264
+SHA256 dcfa62134259ced5590571b26f24f8bcfd6d16d96d4dddda8312da42829842b3 seaview-20070919.ebuild 1264
+MISC ChangeLog 2580 RMD160 0a4ab543410509dcfa53552ca4f992e695d6a88f SHA1 402ac9d67c48a77d8ad9e4981df2cb2e2377c9df SHA256 5b5d249dc723e47db3304ad21402f19066e924f05f338e29bf229a1bfa7d48d3
+MD5 9eb13bbfc43618b0143c056a4eb54416 ChangeLog 2580
+RMD160 0a4ab543410509dcfa53552ca4f992e695d6a88f ChangeLog 2580
+SHA256 5b5d249dc723e47db3304ad21402f19066e924f05f338e29bf229a1bfa7d48d3 ChangeLog 2580
 MISC metadata.xml 622 RMD160 971008c946d3c492a86c946d8be5ed7881981600 SHA1 4a772f6c65f56de1a01eb770bc3b00998e8fc793 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529
 MD5 62b43c9f7320b7c9c27eac02b2644cd5 metadata.xml 622
 RMD160 971008c946d3c492a86c946d8be5ed7881981600 metadata.xml 622
@@ -25,10 +27,6 @@ SHA256 36bbcb192079998e4b6b5601cdba9d35fe7a8cf850cfb97b4d5cc93ea11e90e8 files/di
 MD5 12f7be8bda68958f3fd458149b5cdb6a files/digest-seaview-20060213 253
 RMD160 2c5874f5e8f1e778044c4f1c462ae158c9aaaf25 files/digest-seaview-20060213 253
 SHA256 b91aecb8cac59c15a14b1e5f925c8b065f3a929f636adbea74e5331fbe4153e5 files/digest-seaview-20060213 253
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.1 (GNU/Linux)
-
-iD8DBQFGBekI5mJXAu5GbtIRAnoyAJwOM2SJQFCksALPKrYVa8rDzIgQLwCfRiJS
-6vNBRjzED8CRUaXW+XcdyhQ=
-=RI2V
------END PGP SIGNATURE-----
+MD5 45aa688396038db1079a932bd2cdf57c files/digest-seaview-20070919 253
+RMD160 530dd5235936f0920209c8e101fb5b8aee19de28 files/digest-seaview-20070919 253
+SHA256 798c5db6eb97a43719bc4bff4bab0e0043b1cb7cf3c72c092b9d256dd3229e9d files/digest-seaview-20070919 253
diff --git a/sci-biology/seaview/files/digest-seaview-20070919 b/sci-biology/seaview/files/digest-seaview-20070919
new file mode 100644
index 000000000000..e8fa4d2c65e9
--- /dev/null
+++ b/sci-biology/seaview/files/digest-seaview-20070919
@@ -0,0 +1,3 @@
+MD5 aa7a0d87d2cf4a69d3b639ac9c1aef06 seaview-20070919.tar.bz2 129867
+RMD160 a930e5286c8e2c82dd1b7d33f15682b525a83f4f seaview-20070919.tar.bz2 129867
+SHA256 4c2b3d1e051f72194dc1b7fc742ed92c97f86926615fbd768b2f2e3cff7fea33 seaview-20070919.tar.bz2 129867
diff --git a/sci-biology/seaview/seaview-20041220.ebuild b/sci-biology/seaview/seaview-20041220.ebuild
index 5ca779cbce64..84604b274abc 100644
--- a/sci-biology/seaview/seaview-20041220.ebuild
+++ b/sci-biology/seaview/seaview-20041220.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2007 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20041220.ebuild,v 1.4 2007/03/25 02:58:30 kugelfang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20041220.ebuild,v 1.5 2007/10/21 04:34:16 je_fro Exp $
 
 inherit toolchain-funcs multilib
 
@@ -18,7 +18,7 @@ DEPEND="x11-libs/fltk
 
 src_unpack() {
 	unpack ${A}
-	cd ${S}
+	cd "${S}"
 
 	sed -i \
 		-e "s%\"seaview.help\", %\"/usr/share/${PN}/seaview.help\", %" seaview.cxx || die
@@ -40,6 +40,6 @@ src_unpack() {
 
 src_install() {
 	dobin seaview seaview_align.sh
-	insinto /usr/share/${PN}
+	insinto "/usr/share/${PN}"
 	doins protein.mase seaview.help
 }
diff --git a/sci-biology/seaview/seaview-20060213.ebuild b/sci-biology/seaview/seaview-20060213.ebuild
index b2563b0178fa..f84d2bc78214 100644
--- a/sci-biology/seaview/seaview-20060213.ebuild
+++ b/sci-biology/seaview/seaview-20060213.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2007 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20060213.ebuild,v 1.2 2007/03/25 02:58:30 kugelfang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20060213.ebuild,v 1.3 2007/10/21 04:34:16 je_fro Exp $
 
 inherit toolchain-funcs multilib
 
@@ -19,7 +19,7 @@ DEPEND="x11-libs/fltk
 
 src_unpack() {
 	unpack ${A}
-	cd ${S}
+	cd "${S}"
 
 	sed -i \
 		-e "s%\"seaview.help\", %\"/usr/share/${PN}/seaview.help\", %" seaview.cxx || die
@@ -41,6 +41,6 @@ src_unpack() {
 
 src_install() {
 	dobin seaview seaview_align.sh
-	insinto /usr/share/${PN}
+	insinto "/usr/share/${PN}"
 	doins protein.mase seaview.help
 }
diff --git a/sci-biology/seaview/seaview-20070919.ebuild b/sci-biology/seaview/seaview-20070919.ebuild
new file mode 100644
index 000000000000..0eae06fecde1
--- /dev/null
+++ b/sci-biology/seaview/seaview-20070919.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20070919.ebuild,v 1.1 2007/10/21 04:34:16 je_fro Exp $
+
+inherit toolchain-funcs multilib
+
+DESCRIPTION="A graphical multiple sequence alignment editor"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86 ~ppc ~amd64"
+IUSE=""
+
+DEPEND="x11-libs/fltk
+	=media-libs/pdflib-6.0*
+	sci-biology/clustalw"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+
+	# Respect CXXFLAGS. Package uses CFLAGS as CXXFLAGS.
+	# Fix invocation of C++ compiler.
+	# Fix include and library paths.
+	sed -i \
+		-e '/^FLTK/d' \
+		-e '/^X11/d' \
+		-e 's:#HELP_NOT:HELP_NOT:' \
+		-e "s:bge\/mgouy\/seaview:usr/share/${PN}:" \
+		-e "s:^CXX.*:CXX = $(tc-getCXX):" \
+		-e 's:-I$(FLTK):-I/usr/include/fltk-1.1:' \
+		-e 's:-I$(X11)/include:-I/usr/include/X11R6:' \
+		-e "s:\(^CFLAGS .*\):\1 ${CXXFLAGS}:" \
+		-e "s:-L\$(FLTK)/lib:-L/usr/$(get_libdir)/fltk-1.1:" \
+		-e "s:-L\$(X11)/lib:-L/usr/$(get_libdir)/X11:" \
+		Makefile || die
+}
+
+src_install() {
+	dobin seaview seaview_align.sh
+	insinto "/usr/share/${PN}"
+	doins protein.mase seaview.help
+}