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| author |   Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> | 2011-04-03 20:07:39 +0000 |
|---|---|---|
| committer | Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> | 2011-04-03 20:07:39 +0000 |
| commit | 53412a86d5fa373c2008158dd67f012a2f8acfde (patch) | |
| tree | 73aad2f5c7b80a3cab3b1fe9ea563cbf2451dae1 /sci-biology | |
| parent | Unmask mplayer2 again... (diff) | |
| download | historical-53412a86d5fa373c2008158dd67f012a2f8acfde.tar.gz historical-53412a86d5fa373c2008158dd67f012a2f8acfde.tar.bz2 historical-53412a86d5fa373c2008158dd67f012a2f8acfde.zip | |
Version bump.
Package-Manager: portage-2.2.0_alpha29_p8/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/biopython/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/biopython/Manifest | 24 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.57.ebuild | 54 |
3 files changed, 84 insertions, 2 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index 645fd6cdd31d..21e26ada8e3c 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/biopython # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.59 2011/01/30 19:07:34 arfrever Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.60 2011/04/03 20:07:39 arfrever Exp $ + +*biopython-1.57 (03 Apr 2011) + + 03 Apr 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + +biopython-1.57.ebuild: + Version bump. 30 Jan 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> -biopython-1.55.ebuild: diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index 1fe9bdcab0e8..e43cfd31d0f3 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -1,5 +1,27 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + AUX biopython-1.51-flex.patch 782 RMD160 a69deb13b97f80ec6aed7ec7975e0de4846fe2fa SHA1 dad1c962a632efeccbbec61b79feb71abccbe030 SHA256 ad957b435fc70b218a7a65eb492b0eae5f82b7c6371d2f1451c9dd714fa056dc DIST biopython-1.56.tar.gz 6939664 RMD160 a1c2b0daa4a881052b5e300c59293b8896240f2c SHA1 d33dda23adb148cf4ae0fa5eb37f7396b26c856f SHA256 a6f2b9af4494bf7c0d6d043643ec0e9c2e39d8858874c287604d4aa8e10531f1 +DIST biopython-1.57.tar.gz 6945024 RMD160 ae061442a97decbd9951af8f85913bbc3747ffee SHA1 dbbd23c9f555e0c69d61db96f8aa368617ecacef SHA256 07c16a86127770c8d5b653a6e82fee0999159f7284a3a01c98cf66ed2f0ec4a0 EBUILD biopython-1.56.ebuild 1444 RMD160 8f956429d901370ae8fa7ccda21e56f48e291570 SHA1 f30ca2e65b2d080eb429bd61449c41f3cbf112e9 SHA256 118ddf24afb2dcaf0982cdd995b0875ec6a439f4d461fbfdf3fea947b2dbdbb3 -MISC ChangeLog 9615 RMD160 e336e0f890ea57696226be540400d71d91beb93c SHA1 2709b11bf9cb0ea90bcd6085465af485352f1344 SHA256 600f24f5f750c8f692f38a958dd556ccd61016b7644128e480e8a60b40c74bd8 +EBUILD biopython-1.57.ebuild 1448 RMD160 4027bd075d06cff1c47211614036fd5129f6b68e SHA1 6f6aaac49939d3c81ceda62cb5bb4bff2b35379b SHA256 490bc027658a709afe39bbacaa79981f88231d5b1b88da79d317b0d358eab380 +MISC ChangeLog 9762 RMD160 988034f4d95a8f510ba09fc1e59111d1516e9e87 SHA1 69c20c98056a626653659ed7760654dfbf510c31 SHA256 f56700d5f2cd3acf40e7ac7431da5f5c1de3b18bd49215edae154c6d2174dab0 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.17 (GNU/Linux) + +iQIcBAEBAgAGBQJNmNOaAAoJENgZr6v6gHY0JGUP/0yfRSfmYSKWv25bKr4lajJN +035yceifWUnI2DXmnqwdMNX64L8KYQ8V7NPJZraZZq6DPmDdEGW7QI+b0k+c+HPC +NKwLm/Wh7NLahZA68/Ft8FxFVTqgtQyT8iWo4uyrECyELaAeNtYJHMEjBNpqMMtm +jvVXNtHYzUnruH6OqdKS5V0GXyGZe9WnEydBS/069CkX76vl7rs8isMtZIwNZiUs +PaQ3at7HomgMcrBfrBfQrMx5UJdoyYT4ORUE/UR4b3q9VQjFBy2H62Yre6osXESV +NXuGvGbAj208NtoKyicoeGtWf7zqq2JUIY26Tagj/wYl2Ts4D5uVWBi0Ye0Ju4qD +j2DJ1h4BBeMZgs5Qcyg4wXLPsLQg4ZVH+MEMvd3PbO5SFdkC5/FguK96UilXZfDc +4xxKBRRKk9fFyfeNmJelDAUBLX9rqZJ707yIZNDK7vLJyC1M8I4I5OG2cSVbz46c +ZPxqjS0hqHD81dczsDFttI03o9rOREvw1kaUvZ5gmysUt6QhDSa/gH8nGNMhVUvf +0UBGf2zJY6/uftx6tTs+UDQMFI0mImAsbmBrEwO7w3HPRSQB1adPR1igSnRL9VEp +KNpPXjjx1Mw9CSZ3nNA/5qJ9mfz9R1K4k+wC08UM8oLl/dR7Tbgjf0BvHTfjcBiE +uDzI5o3nrLkqOZ7H5mdG +=gsxw +-----END PGP SIGNATURE----- diff --git a/sci-biology/biopython/biopython-1.57.ebuild b/sci-biology/biopython/biopython-1.57.ebuild new file mode 100644 index 000000000000..27fe75d23b0d --- /dev/null +++ b/sci-biology/biopython/biopython-1.57.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.57.ebuild,v 1.1 2011/04/03 20:07:39 arfrever Exp $ + +EAPI="3" +PYTHON_DEPEND="2" +SUPPORT_PYTHON_ABIS="1" +RESTRICT_PYTHON_ABIS="3.* *-jython" + +inherit distutils eutils + +DESCRIPTION="Biopython - Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org http://pypi.python.org/pypi/biopython" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="mysql postgres" + +RDEPEND="dev-python/numpy + >=dev-python/reportlab-2.0 + mysql? ( dev-python/mysql-python ) + postgres? ( dev-python/psycopg )" +DEPEND="${RDEPEND} + sys-devel/flex" + +PYTHON_CFLAGS=("2.* + -fno-strict-aliasing") + +DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1" +DOCS="CONTRIB DEPRECATED NEWS README" +PYTHON_MODNAME="Bio BioSQL" + +src_prepare() { + distutils_src_prepare + epatch "${FILESDIR}/${PN}-1.51-flex.patch" +} + +src_test() { + testing() { + cd Tests + PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py + } + python_execute_function --nonfatal -s testing +} + +src_install() { + distutils_src_install + + insinto /usr/share/doc/${PF} + doins -r Doc/* || die "Installation of documentation failed" + insinto /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed" +} |