New upstream version.

Package-Manager: portage-2.1.2.11

6 files changed, 104 insertions, 2 deletions

diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog
index 63fbebea48b1..51996fb68a99 100644
--- a/sci-biology/prosite/ChangeLog
+++ b/sci-biology/prosite/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/prosite
 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.99 2007/07/18 01:01:22 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.100 2007/08/20 17:22:32 ribosome Exp $
+
+*prosite-20.17 (20 Aug 2007)
+
+  20 Aug 2007; Olivier Fisette <ribosome@gentoo.org> +prosite-20.17.ebuild:
+  New upstream version.
 
   18 Jul 2007; Olivier Fisette <ribosome@gentoo.org> -prosite-20.10.ebuild,
   -prosite-20.12.ebuild:
diff --git a/sci-biology/prosite/files/digest-prosite-20.17 b/sci-biology/prosite/files/digest-prosite-20.17
new file mode 100644
index 000000000000..976971def755
--- /dev/null
+++ b/sci-biology/prosite/files/digest-prosite-20.17
@@ -0,0 +1,3 @@
+MD5 a566c60117b472fd3a5ad39a24786d66 prosite-20.17.tar.bz2 5274963
+RMD160 5ec896c099fa739a636d5aa77e017bcbcbee78da prosite-20.17.tar.bz2 5274963
+SHA256 cd7a9a743d224968e38e1143cbeea40fbd0ef6231a1672687ec527079f21aded prosite-20.17.tar.bz2 5274963
diff --git a/sci-biology/prosite/prosite-20.17.ebuild b/sci-biology/prosite/prosite-20.17.ebuild
new file mode 100644
index 000000000000..e501fd00ede9
--- /dev/null
+++ b/sci-biology/prosite/prosite-20.17.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-20.17.ebuild,v 1.1 2007/08/20 17:22:32 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+LICENSE="swiss-prot"
+HOMEPAGE="http://ca.expasy.org/prosite"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )"
+
+src_compile() {
+	if use emboss; then
+		mkdir PROSITE
+		echo
+		einfo "Indexing PROSITE for usage with EMBOSS."
+		EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \
+			"Indexing PROSITE failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins *.{doc,dat,lis} || die "Installing raw database failed."
+	fi
+	dodoc *.txt || die "Documentation installation failed."
+	dohtml *.htm || die "HTML documentation installation failed."
+	insinto /usr/share/doc/${PF}
+	doins *.pdf || die "PDF documentation installation failed."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/PROSITE
+		doins PROSITE/* || die "Installing EMBOSS data files failed."
+	fi
+}
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 72d3462e469d..d2f125044506 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.85 2007/07/18 01:03:53 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.86 2007/08/20 17:25:03 ribosome Exp $
+
+*rebase-708 (20 Aug 2007)
+
+  20 Aug 2007; Olivier Fisette <ribosome@gentoo.org> +rebase-708.ebuild:
+  New upstream version.
 
   18 Jul 2007; Olivier Fisette <ribosome@gentoo.org> -rebase-704.ebuild,
   -rebase-705.ebuild:
diff --git a/sci-biology/rebase/files/digest-rebase-708 b/sci-biology/rebase/files/digest-rebase-708
new file mode 100644
index 000000000000..a9dc9fb61ae9
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-708
@@ -0,0 +1,3 @@
+MD5 0d52f71a759f4bd9c31aa27f9edc3f7c rebase-708.tar.bz2 185379
+RMD160 7a70c90cec198e0bc60bb7d16d00a9080b5d11c0 rebase-708.tar.bz2 185379
+SHA256 0031da580a808a096ca596b27ec0fb1167128272d030332031b901b00115c305 rebase-708.tar.bz2 185379
diff --git a/sci-biology/rebase/rebase-708.ebuild b/sci-biology/rebase/rebase-708.ebuild
new file mode 100644
index 000000000000..629da51a1150
--- /dev/null
+++ b/sci-biology/rebase/rebase-708.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-708.ebuild,v 1.1 2007/08/20 17:25:03 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
+				-protofile proto.${PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV} || die \
+				"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup} || die \
+				"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ \
+				|| die "Failed to install enzyme prototypes file."
+	fi
+}