Fix Typo

Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
author: Justin Lecher <jlec@gentoo.org> 2015-04-07 14:35:48 +0000
committer: Justin Lecher <jlec@gentoo.org> 2015-04-07 14:35:48 +0000
commit: 87e10f11cd146c5ba7795e3f9f8695e18dd1c2f2 (patch)
tree: 12a63d58bb799fedb300d513bd7ffb3494f51c6b /sci-biology
parent: Fix Typo (diff)
download: historical-87e10f11cd146c5ba7795e3f9f8695e18dd1c2f2.tar.gz
historical-87e10f11cd146c5ba7795e3f9f8695e18dd1c2f2.tar.bz2
historical-87e10f11cd146c5ba7795e3f9f8695e18dd1c2f2.zip
68 files changed, 631 insertions, 525 deletions
diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog
index ee15a902a973..19599d3008d8 100644
--- a/sci-biology/abyss/ChangeLog
+++ b/sci-biology/abyss/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/abyss
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.20 2014/07/06 11:12:45 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.21 2015/04/07 14:31:56 jlec Exp $
 
   06 Jul 2014; Justin Lecher <jlec@gentoo.org> abyss-1.3.6.ebuild:
   Add missing dep on boost, #515156
@@ -10,7 +10,7 @@
   11 Aug 2013; Justin Lecher <jlec@gentoo.org> abyss-1.3.3.ebuild,
   abyss-1.3.4.ebuild, +abyss-1.3.6.ebuild, +files/abyss-1.3.3-ac_prog_ar.patch,
   +files/abyss-1.3.6-ac_prog_ar.patch, +files/abyss-1.3.6-gcc-4.7.patch:
-  Version BUmp, respect AR, #477580
+  Version Bump, respect AR, #477580
 
   11 Aug 2013; Justin Lecher <jlec@gentoo.org> -abyss-1.2.3.ebuild,
   -abyss-1.2.7.ebuild, -abyss-1.3.0.ebuild:
diff --git a/sci-biology/abyss/Manifest b/sci-biology/abyss/Manifest
index 59fc9b0c3561..9444c3f3bb0b 100644
--- a/sci-biology/abyss/Manifest
+++ b/sci-biology/abyss/Manifest
@@ -1,3 +1,6 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA512
+
 AUX abyss-1.3.3-ac_prog_ar.patch 455 SHA256 bf6b1a219724c582e23395cbbf00f311ef0f87d50777ece04ce026eaec5bc37a SHA512 61018d26e00d369d67c875a6bbf18b0e46e13f74ea9115a857b1adf17d029b3824fe6850a5f88590b6e7361ba0baedfcf7d3508bb648e2dd0bfb51a2ce39c95a WHIRLPOOL 84b2bc50504826a79870758572b02bf08ed790fe45664bc9a6c6cde24baeedeb704060ea81a408f9a21eb85958d6949dd8a226363efd54b83a88746fb5d36d5d
 AUX abyss-1.3.3-gcc-4.7.patch 388 SHA256 a5f57201cfcffba775003bc2d02aed7263f2fdc03728b75664d5cb3f6af9f977 SHA512 ddc6b832fb821566361570ed129ae23372da48934f402a6b8ce6a2c67c91095db09e4820eacdff4124967948e830ff97120c5ca3c2d913242f761050a6cdd568 WHIRLPOOL a4b4436c1990e3f1f1578d32961870b1b078b887ecb089f77fce45490e0a5ab837f785654ec845e2e5ffe00bf3d92605093e14b6c3f27dfae369ebc1f319f14e
 AUX abyss-1.3.4-gcc-4.7.patch 388 SHA256 369b2f4e34ee63f8fe3d305ee1995b024d1b850404cf9df565f863a56e7933b0 SHA512 4a28fbdc3da8b4a46b6def895b244d566186d90af76592ec72b2a6481ed15563189cefb55238314e604c39596ba7c522947d26c34dbc6ef7cc387d34c0448d4b WHIRLPOOL 0f8bb74f20d835a32524941d2e618774466597dfa5b49138570672474caf4930dc746544d8d3c188226141ebb262619ee9b4ac2a659f543c081ce9c9bb64a012
@@ -9,5 +12,24 @@ DIST abyss-1.3.6.tar.gz 678880 SHA256 4432a8b5046bdcb548b6f1b22069a6cade4dea26fc
 EBUILD abyss-1.3.3.ebuild 1038 SHA256 f0a0c12e5c1dc971ea2708d781e8acda52bd3de6cfe7faf0559c4e8a18fa8578 SHA512 ca8fbf0b962dab4dd913b1e40e9b7a46ad2d5f712246bcaf48204948f244e67691ccec893f0de949cc100fc6de841a1741fd5364a283d6cb6d6532c686ced5f1 WHIRLPOOL 8e3da896d346df5d431ab28c30134b90f094de272ac84f9f0d7695b4241e42f6fdcb1ee5cee76f6b381ce37c8b01bd70c61b4d13fcb92bc43925cfaaa484d87b
 EBUILD abyss-1.3.4.ebuild 1114 SHA256 26ce3dab3426ece469623a9f7bb6138fc22d55f76aa29b5831b6f4f22fb94eaf SHA512 a7d49d4af5a0f027e09b295f6459a51b1c2a7dfbee36cd4d11f4033fc9ce410c34aec830f5c6589ff2229bba8126a87a0fb525ab387d29a2dea226e653e1bea1 WHIRLPOOL b7f814ad15dca90b3ffc88048d50459f6492b24bf5e99a313574bda718d6139649849ec621772787a91b45e7c942299ba26d57240f547fce0f20ac7dfe85a52a
 EBUILD abyss-1.3.6.ebuild 1123 SHA256 031097f93ae1d8f68068ca441fb9f7993e68bde102eb6bc4eca8b9866cdb42ce SHA512 4a4c574d33fc5d6a831c18c57cfce214f3ebf3dab949b34e8dc90edd61773abc46da80b04be93926eac3f3e73d86f204faf9f6dedc3df65fe46dd7eab303801d WHIRLPOOL ee615d6e3d951870c7790afdbb084c1d426856877c886d6e3cf76ce99956eb28f3cddd410dc26ffc4eed4d484fd26b2795203a551dc4d472ec5d0b2f1557f47a
-MISC ChangeLog 3086 SHA256 d09df916664e40aee49ac7c9c53b87a06ff883f1067a41c8f7906cb48144ae6c SHA512 e79f58908d21521ac84a8f70498e20dd97cac29a717b36e0dffa14fad7c2582eb7704482bfd5c5046c72bc80e1caff7492187d815e4d7d2240f15f79b898c32b WHIRLPOOL 8b1bcba59652bbae7726e9783eebad10b985efd7c543519e29f5aefd117d59f4b3fb524484d061855e809b262f9b8f40ad7afbd17c0efe20a6f75d77bceb43bc
+MISC ChangeLog 3086 SHA256 3e295bd3a13f20016e1baaf773c888fad647ad1aa09f77719590a3d01b33e320 SHA512 28de3b6bb48d775fb1ecd1bcc37aadf43451a7200ce691b11833a41dcdde6046e70e7a3b76d5fecb2cadcd96fd94d3e67b6ad1758b9132028aac19339c8e9bd4 WHIRLPOOL 9d73031727499d87e932b55833512068e36c57ca6ab4dc06d8a458f3db89fefda263d858d322468f6de5a9a34113f1a826a01878c633d19ed3d79d962ba410ff
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0
+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+=Y7Cd
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog
index 927708e65440..19e4feedd8c7 100644
--- a/sci-biology/allpathslg/ChangeLog
+++ b/sci-biology/allpathslg/ChangeLog
@@ -1,11 +1,11 @@
 # ChangeLog for sci-biology/allpathslg
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.19 2015/03/31 10:53:53 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.20 2015/04/07 14:32:01 jlec Exp $
 
 *allpathslg-52415 (31 Mar 2015)
 
   31 Mar 2015; Justin Lecher <jlec@gentoo.org> +allpathslg-52415.ebuild:
-  Version BUmp; move to EAPI=5 and autotools-utils.eclass; thanks Martin Mokrejs
+  Version Bump; move to EAPI=5 and autotools-utils.eclass; thanks Martin Mokrejs
   for preparing the bump
 
   31 Mar 2015; Justin Lecher <jlec@gentoo.org> allpathslg-47093.ebuild:
diff --git a/sci-biology/allpathslg/Manifest b/sci-biology/allpathslg/Manifest
index 6241df740fd7..982abc73aef1 100644
--- a/sci-biology/allpathslg/Manifest
+++ b/sci-biology/allpathslg/Manifest
@@ -8,24 +8,24 @@ DIST allpathslg-52415.tar.gz 3129266 SHA256 3c62024a0eacdc223bc727be4718da644fb3
 EBUILD allpathslg-42337.ebuild 908 SHA256 4b2d74839832fab3ecfdce115881f7f0f96f85a74391ce34646a6a9e07bc9e46 SHA512 a99a0f889b68f54b881df263b4444409aab1b6819fefc1c6107294d3a93597eee833e7e0627ca6d9595c7c1dd95e5f4ffe9ba735821da90d1b6a433de2946330 WHIRLPOOL c74ec2dc882a9532127e152dfe308423deb6fecd8c03e4b8dc053965667ee30123071f2e6dcb8699bab1cd2a8e18f39b1b3dafdda416cea6cc091f975491fcaa
 EBUILD allpathslg-47093.ebuild 945 SHA256 e5572ea5029b006b633087ab3d2052d625761e1ac998a6f4b8f5b9ae9c52a6f7 SHA512 102d698a80a62ca170777ae0abda572238265d384ee4f3e8afe5021da1a574d6097037dc8e0bda5fc3b2c2df566eb77b267b82962f6635462974c99634b31214 WHIRLPOOL c942ee1323948b4c033607c122315c3e5df2d1c4d5f8bb3aaf7612c777214b4d7ab8c2912121e4295b6745b0e1e796380a8bf586c6a7d007c54a808c7ef42dfd
 EBUILD allpathslg-52415.ebuild 1521 SHA256 cf6a7012fd6fb17ebe20cb26ffc9fa45bf0c1003e2442e2106b788359741d72f SHA512 b2a5751dc62deaa9c87ceb3996e91f431f066cf6ba80d061eba9bc50510fc960d28347c3f3a5ed71ed3847b969b7c2467bb14b678b7a01ead533a71e34fb842d WHIRLPOOL 39c7cc8448df93c0590a341d7ddcded4cdb19f88d8f7b61511ae20c4142d0f3e2508b3023367490464295e0374c2dfcb4cd9ec7a9946ac20046445f63a804d31
-MISC ChangeLog 3047 SHA256 f9945e35cc59d88b4b5b6398d54440113336155ac415fb75fe3d6fd3f5ec3302 SHA512 700a9bf685e0f98ee015fb503b82643f13fa3ece5f070d93d1bcd14e096189c29acbe9b516ae8e33db798a612f24fd164a912c0f632d80ffa1aa71ef2f9d74b4 WHIRLPOOL a1f9892c0c5fd35b76665ed28e91f75c844cbd20962d409c855a9a009e7c0ca3cfbcda9bd4d0edda80470ea22158ca63d23a25a1f67d34c7c5defc00ded2637c
+MISC ChangeLog 3047 SHA256 d1965964e6a3587e3ba74badf03f4842fc00bde406aff79932abaf63b8c84788 SHA512 c248db08878f989779bfae72281d76e3fb08e021732ad5ad557d2630ae8e18ffaad30a6b465ffb7f50efea957941554ffc838a959d8de240e49b028653d9f181 WHIRLPOOL c77d8923472edb1f8090897201f2c251c356733d959b6246ddead36ecc8a97fa4f576f3462399428d13dac0111adbb788c76e946b8d3cbccf7a5d3356e175d91
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVGnzDXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+piXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirO7wP/jrvQbEl6Jr6zLHuhU1pmCxM
-/iiM6lX2veweigbzlw47FSDrwaOqYH5UbfJ9Uius8V4ZpVmZSZo3AWsISDFHbklk
-frwGEdoYTJftT0mVDESXaRXv7jmH6axapllNKAwHxPAyobLxFvV1v+Pcg6AEnQee
-OLQldThZvkoDM5JMaqr4gP6gMRlHMhzohmUepKSRBGX6qnEFW0cD7kbMAaTicPx0
-PsvNG//5jISZfixmji1w93Sq2qVfyUUG0qL3On8kOyMVutl9V7lkL62OhU6/PnkX
-M8cfYGzo0yHpso55m1EFZ5gp4edExEDjno/VGbTyau3x7cCazEXKgpfBJhsGbUh/
-crAFa5Nn8sNyXqWM/Zl7AUNHEPH/yQXY5hhDwqiUPXzbYoSubFiamu8juTcN/iq5
-vXWMk2XMWmECSxaRt9nVh/34WYi5rq2y5KUJBTxc2UI7WFBTjve/2Z/eCfxoAjX1
-bYoGre8BKZvT44cQ1tSIUxbqlgKxKZkPRf8pahMRnAMIw5/2/bsnnS2l0ZsNn9EM
-DKso7GkCYSBAH1ExmLMb/X+O5tjQZqnykkkmadhuJizLN2+F82WBU0OnUiCdxi2f
-TbJxq5srR/eB+8VqHY2QDh3DqcRjHYKkbv3JLdnLZDuswSu7t7NGKbUrJ4e+/+Op
-xOJ9qla17gcY1BQKgZLJ
-=/6kx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+=PMYV
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/arb/ChangeLog b/sci-biology/arb/ChangeLog
index 7df4b4368512..d960d881b2ad 100644
--- a/sci-biology/arb/ChangeLog
+++ b/sci-biology/arb/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/arb
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/ChangeLog,v 1.10 2013/03/11 14:36:47 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/ChangeLog,v 1.11 2015/04/07 14:32:08 jlec Exp $
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -14,7 +14,7 @@
 
   14 Aug 2012; Justin Lecher <jlec@gentoo.org> arb-5.2.ebuild,
   +files/arb-5.2-gcc-47.patch, +arb-5.3.ebuild:
-  Version BUmp; add fix for gcc-4.7, #431228
+  Version Bump; add fix for gcc-4.7, #431228
 
   04 Mar 2012; Justin Lecher <jlec@gentoo.org> arb-5.1-r1.ebuild,
   arb-5.2.ebuild:
diff --git a/sci-biology/arb/Manifest b/sci-biology/arb/Manifest
index 55b21188025d..6d946c06053d 100644
--- a/sci-biology/arb/Manifest
+++ b/sci-biology/arb/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX 5.1-bfr-overflow.patch 715 SHA256 bedb03c70bd0e4e180f8d6e966bfaf34af32125a1595aae8a994617e6a2f2833 SHA512 840dc83a2f6a6c7da05437a72bbc9372a229a18f6de08758141c6ed142a034f4b2954e9a650185fcdcdd5e672cabad32d9b2496098a2369094f502f87143710c WHIRLPOOL 8c7a986da48f147962456ecef668e516b1c14bd60ce7084b59d4dec2ca24d5e785f1e5ecb59ce6a824676736566cfedf8aa19746492aaa1062b584d3c799fb8a
 AUX 5.1-libs.patch 503 SHA256 dfa5f131eafbf163b9a3862360694a7b1f9d6231357247c7f18f696c4c4dd983 SHA512 9130fd43a7a6c43ac5dce56eeb85cabe881ddd12a2786ae0ec73432584d498afb1b7f28514c9d078e6c19f6654f2ef88192e96cac2f4be5a04474f534a2bdcdd WHIRLPOOL e82d5ae89ed7ffab4d26d6ca4049db1ebb9744c2dc41626c219d5263b8e09a27dd8cebb880821e8d4707bdbcf70a02ede760745fbd34567dca72883d937f2dbe
@@ -15,12 +15,24 @@ DIST arb-5.3.tgz 9543106 SHA256 c40a3f33f39996e3e331fb41acd452e5a20b7e638b856b0b
 EBUILD arb-5.1-r1.ebuild 2177 SHA256 affdacdf7b5d0be7fc48f621c9bc77d5962ca5319b58ffc4f7759d216695c447 SHA512 513d528ca6a1a9e094c2221422ba9ea5aa3aee0daff89c6564edcc2f2767cae7e9326be2ed596b454bd2c192d29d18cb28e1b77e1b1d2279e3e0b770d49482ea WHIRLPOOL a99f10bc8443a02f444d024105e729784d4c4a2584ec8a74591d2a53dd175c9640b7eb01ee3a1a0178a683b9e8e99ca48994d001a98c3e8fa03b090739a0b01c
 EBUILD arb-5.2.ebuild 2180 SHA256 f7a0bf031de995517aa0d4b194e2a821a2a6ce909af681df084c3d72a3674a81 SHA512 4e2664dd9107217a31664196edf5a34b2baa17f097f1da03ffd66a1a1a250fefa0521aa5285849cfc17ae62e7174804d7f7cfa67128e4d74643bd2021220c607 WHIRLPOOL 3437ff95addd757a9d882035e285fe2474520c3b711b783ed509f6add36981e0ef3ad707155de40f9b014de12b0c6c792cce3dffd563f54a8f281d2d8ed1dfcb
 EBUILD arb-5.3.ebuild 2144 SHA256 59f7f42b64650b0690695225eb9b6d02684abc5593d6865bb02878601724e2c9 SHA512 d9202e302a1eef216ed29beb8d80890c4d32133ddeed2a83a322051bf58f3ed66b333473b790a0925f056266e23db523fd920cb095679e5d79bcf9a5d7990012 WHIRLPOOL f183f97c14b76305ff2ccdb92ff62751d2f8c0c85f259e30907b49f25ec21ec07adf7fa92a805bb6b2f03b59adb70fca8fdaacb9c28678a014ad4cf270b79dcf
-MISC ChangeLog 1976 SHA256 11983628913598b5abf0698ff1e121801f62510b085b4f602e0ec0f7a080a832 SHA512 b414cf5a83710378e54f9f303f3a3faed9a2b3c8c9e191196093bf496b67576440235bfa951303087fc47e4c6f4695c4cb0fef3fab7602e3f173b2e54569b826 WHIRLPOOL 86e178846df664469fa4e4a78d47f7df6967da57cc844bc3b85c72aaa7f3ae25da90035c78e218482b65148db97d26ab5a336d0d26a287d3c7bc972e26a64943
+MISC ChangeLog 1976 SHA256 6fc35aa3de6891c63a3606d78ecd30e81f735d898039e324ddd6bbde6835845b SHA512 5ac257c7afa34f964a02a2236e8e0314bf7848fd6829df73a022d550446b49b5de529c19c190f89691cab272caf0105c7ee2d9d70755427c1a3043c7d849b733 WHIRLPOOL 5c0982b3243f24cf774b78ab2ed1534b4232a45b0b87d4a4a79e2db32591c95151fb7d2a262f9a006305fd32a26d30c273206656fad23292264930ef45276bd8
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.19 (GNU/Linux)
+Version: GnuPG v2.0
 
-iEYEAREIAAYFAlE97AAACgkQgAnW8HDreRbcDwCfY6chi3Ar35dNlehr9tDu86Qb
-pR8AnjtcYsbes52U35c38xxco1D85Rqb
-=ZIxq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+=Xefs
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
index 4d9275a04df8..bede7dbe79c7 100644
--- a/sci-biology/biopython/ChangeLog
+++ b/sci-biology/biopython/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/biopython
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.84 2015/03/29 09:35:53 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.85 2015/04/07 14:32:18 jlec Exp $
 
   29 Mar 2015; Justin Lecher <jlec@gentoo.org> -biopython-1.57.ebuild,
   -biopython-1.64.ebuild, -files/SffIO_broken_padding.patch,
@@ -50,7 +50,7 @@
 *biopython-1.63 (30 Jan 2014)
 
   30 Jan 2014; Justin Lecher <jlec@gentoo.org> +biopython-1.63.ebuild:
-  Version BUmp
+  Version Bump
 
 *biopython-1.62-r1 (29 Dec 2013)
 
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index b7e71cfff198..db973bedd6cd 100644
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -4,24 +4,24 @@ Hash: SHA512
 AUX biopython-1.65-test-fix-backport.patch 2070 SHA256 e232b49f97f417255f62ff4cd4be70a43b7b958840d4be411e62d503e463a9aa SHA512 c5b2ed12361727bde109c98d5e2733fe7b826e6accb25279eb8c0190dcd89dc3b5e9b7328a3ace2d57ce91f0668617518c2eeb21e80f6eb97ff9010e4004f53b WHIRLPOOL dff88a361a6564732a665fb5142155f81ae10e108eac230b199fd2adaea0f0ee45e8c02b94696c968af0473481caa5d36ddd88c7438db361f8d24fd5bb773a97
 DIST biopython-1.65.tar.gz 12641342 SHA256 463cc81db84e9bfcdfb15629511c81ed556a6c0287e670dbfe80f03c65d2a88e SHA512 2a9c6a89d0279374c243938d13bfdd6f2b124a08afbfb0c262e1e4827c48a141fb9941f4cdb960f76b523f0ac152095a8c6ea566d9b469ce9daf8a7e7993f7af WHIRLPOOL 40757938c0eb7e30c9609ef5aa2d397fa21ad92cd20c9b6300cde1b381a0e6c21e4ebb7f4d25bf02651789437d7d86341154b907ccc0007759c17939f2e29da2
 EBUILD biopython-1.65.ebuild 1664 SHA256 a16d3e6051c3ee1a7f2e0acf11232ccc877525727d5f3275f71bced83e2b78b5 SHA512 2b59b0c20460b1c066d0e4994f5fdfdb23cfd4236e9e3130211aed3942a3cba6d9b403f75b4179c4b6b0962953eaedf57991180cb5deabe4866931dfbde4621b WHIRLPOOL 113b58b3505251d9857e8532dd7389a915bcb553b6180f63ab18f60a8d96eb9107b243f989e0717f640e34269e9b9e1638d10a887cf000e0212352da3f3ea7d8
-MISC ChangeLog 13216 SHA256 73a9e04b892fa311df8d376224060741d14b9178c2bd871f54ba4013f157b826 SHA512 2f7949ed186ea788a280ba9ee87a92171f34b7fb88d1ddeae6c1e2e4497c6c44a1f7750d9a434185391e5b949ec8be1761329759d10c28c0af46c61ac87b339b WHIRLPOOL a79cf73801e3ca2d62b3bc3505ce50224e2816500ac6e419a2d7ea0faca570d9d8d6491ccb97b221b24caf30f1dd53055d73e0ecdebd0d02d536d5b27a3364b9
+MISC ChangeLog 13216 SHA256 cc9c6b624ea4635f4346a34cf7ba4771364f161175177268e24a646ada9db31d SHA512 197cfe74bd1b98c0580ce07bf30ea23b21a7549a6c365588838468ccd3cebc4f9952370e44e6a9f66f4eac34c0239fe46de60732640c664cd49991c40487f198 WHIRLPOOL b1fdab07aad1063f3bdcc943519161b551db150393ce425f1a998b59c7fc24142ccaa997835d9ee4eb7119b6758b2ebd138e2f5a7c454177c34a184814564b21
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVF8d6XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+pzXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirZ64QAIvB4xqh6dWuJl0i+5gMzE9I
-0HmXjxz9PR/KtmrdX8F7Q7SfIf9KTfiWNHZ/p4YCVyy2ATdTfi9pJs8GRRhcNHwm
-bBsU0BUOVqn6X2ZK1wFDYwRv0Rk1kIoJ/eFPN44HZVkZgbDvBmb5DJNr/RKopAVr
-0FTMDcnVEUjh0m9DMbqrw4MTpHXhW0CxmoYQoEgBJP3z1DKsvzKg9OKdg7wuOoLW
-JjpiVlgHnmnnAlZBVKaQ3xXz0MHDORG2RFd6kF6GLJ2T8wOSuI74nph8/lBbsgp1
-ZtSl2PR4tl/v+3wZvFffEAgmmtXbFyjU2w5Wcpzx0rkQhRSspFTYyXD6AuYoS0cQ
-CyeLtzPE27g6WJCTSO9AjnUGFiTYaGciMnH0NeQ/2pYqw5ogSoRP16YMssxwM4u2
-RZFclZB1I+7njGK87iztOsDnTcMTYPBU2w2KADRhFDt0gcsROpYn3XS9VsoKMy+2
-Mi905z1zlA6My6q3Sa7Jd3UXQ/vrY1e4c/XT9G4Zfq+1rECJxD6aPp2fedlc0QT9
-ewbu51XwwGvWEoxqIS5u5XhXg/dIQEahL+kXpaVNHATCO9UlpQxsOFxVmAvsE91E
-w9tY9ykENjvQcJIqSsupRfQYxDY+djYxqOvWs/Af/RrPGqhCJh+DtSQ863R/9L/k
-jqbsNz5yrt43rgIw7Dfa
-=kjJY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+=/0Np
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/bwa/ChangeLog b/sci-biology/bwa/ChangeLog
index f3a4ad59eec8..646bc7a3f094 100644
--- a/sci-biology/bwa/ChangeLog
+++ b/sci-biology/bwa/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/bwa
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.15 2015/03/03 15:17:58 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.16 2015/04/07 14:32:24 jlec Exp $
 
   03 Mar 2015; Justin Lecher <jlec@gentoo.org> -bwa-0.5.0-r1.ebuild,
   -bwa-0.5.9.ebuild, -bwa-0.6.1.ebuild:
@@ -10,7 +10,7 @@
 
   03 Mar 2015; Justin Lecher <jlec@gentoo.org> +bwa-0.7.12.ebuild,
   +files/bwa-0.7.12-Makefile.patch:
-  Version BUmp; thanks Ted Tanberry
+  Version Bump; thanks Ted Tanberry
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -29,7 +29,7 @@
 *bwa-0.5.9 (01 May 2011)
 
   01 May 2011; Justin Lecher <jlec@gentoo.org> +bwa-0.5.9.ebuild:
-  Version BUmp, #354925
+  Version Bump, #354925
 
 *bwa-0.5.8a (09 Oct 2010)
 
diff --git a/sci-biology/bwa/Manifest b/sci-biology/bwa/Manifest
index 3ea422e76d25..bc9534e25ac8 100644
--- a/sci-biology/bwa/Manifest
+++ b/sci-biology/bwa/Manifest
@@ -8,24 +8,24 @@ DIST bwa-0.7.12.tar.bz2 184599 SHA256 701dcad147ae470d741717a72c369b338df7f80bff
 EBUILD bwa-0.5.0.ebuild 665 SHA256 fe6a5dd9d7439ef97a1cbe94d0facb29dbc513e5c6fdc7944151850307205f3f SHA512 48c07646e27a787c9acb248866fae68def77cd2c9cde363d27013593cfedb4b5d5418497e3ce771daf999d0d3d548ecc5d66cc7d36996a2540b37027e67dc4c8 WHIRLPOOL 2c283bf4d8e40dacfac95c1470cad311cc5ede18963004ba3897f0cef0a9ca7750d4f08480f3dfe3d563dfae1ad869b3f98a525597d916bf43f36585c37add97
 EBUILD bwa-0.6.2.ebuild 870 SHA256 16b8d1bc0542261324e189f0331ac7ece261bc66c988affe177d6c49cba27280 SHA512 6b6f1b39fd795745e48cf72dfb67a6860002d117f9cc3615bd8cea261d95b850120322913028e914dc35b90698828d81cdc214c77e1a67b5634bfc8c674add77 WHIRLPOOL bd960bf958ab3a40c6c648f7cdbef849028f0624cc766cf110334fedcf8e243e16f32ee341cad02f995258b6b9f7216af368d3d7b823cf2ecb84de7f940c984e
 EBUILD bwa-0.7.12.ebuild 751 SHA256 a7dd09a406dfc32e337c1a4ca437f6ccc884a4647847431f769981238726aa05 SHA512 b492f823c7e6af199afa917902bfb878cbe3ec3df660521f03c1b358a68105c2f93d09bd9896f547ae9fc586692347a1e24d6756563bf619a1d1f9c63753b2db WHIRLPOOL 3f456eb0bf74e8ef1174e1f59e73882be4b3f7dfd73c498652e2c1615df93cf3c453c0d47aaf7d733db8fcfcdd3d0e2fc90368d39a926f8dbdc6193f2521bfe0
-MISC ChangeLog 2290 SHA256 52a7e0f25568523c5029e6a27c388d5dbcec6ff3ece329542d90113bef817589 SHA512 1e38c457d39b256bd1fccf50567a8035eb9ebdb5c929447411ce89a62ce113f23e0928ef2e6461801a617163327b6e7ae9674ddac0aec4894a22e80d09d646b1 WHIRLPOOL 1d98fdc14b5454017c384c80d3286432837b2ce9471f63bc8e071d6d2706ce7275341077c34b4481700a06226cdd3f70cd4ec3e7c899f0df8a80cdb85671262b
+MISC ChangeLog 2290 SHA256 c024586b64897803a283477bfa1b4fed41d2750491ff51233baf59bf75da503f SHA512 bf56aed9164b135ad7336222d4fae03784913c3294a50f18dcde41618913a2d2181e8a185c98bb13af07758e9c85c885a468c089ef8558a4c7bb9979afb2407c WHIRLPOOL 008402b6ca445faa14e054aa1066388e2c48bc07e9924e21b7e021248c77065d78a363a2e872825a3e6714558cd5f45e195f3768d004d1d327e02ab4b9f10c1a
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJU9dCnXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+p5XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirOpUP/1BvsLDvWsAnv0bZHbS+PTBM
-ee6n76ijCIaDLlvHe3wDOGliZQSMM3nsv2sGDHeBeYt5F2CQZJLdGsjG4l5nD1xW
-xksOSATm7uxS/r8r+jQeMyIom0hheb0eL3KX8XW2v7aLt6sPf7iV5G/A0/fpuSsT
-v1mE0nSlTuEg6vlXiE7eUrFfAYp7YVsYi6USD5fyYD4mS4nwVnnuiZZoiIhWRr13
-oLm3/vPeWaDVI9N18cfLYGBOCpgMoa63USocaxqA5YI24lSFzLoCUVn8S9jaca22
-9f3zmE9uqbaAETsDeQrwdz59R5rQaKTLfjZQuqQT+5vY4OFp4d98CdMy1/4DP5vz
-52acgZLDdwSLHFgMXcdI8ykZ8FpRY8wqXCc72egb+y4YJhg+Gr4gFNdiZTs/Dy/w
-vGUrdyVRIgH2XORsgBIIDLHHr5lPEvq6NgE27N+ymGUG+XHh6qIrGbZGBt0ae7CE
-5BiH6Yi3HMQMjVDDBkeAKlggtcAr8gNRk6HdpWSYuG84sjy/P6sD+iRJjbD9H866
-m7Cz4GR5hQ1/saWIYcPd6/B/ksjpX80crhxBolm7O2yNq5Nh2ulGWnzXPZqHNNVY
-xT/PrVO7U61HPyycmPcDk0YuxqSyv9sdJ48Oa5ya4HFrQn+cFiVuerxYvc7kPYdk
-3QXWm/TCw6bEYb9oy882
-=arOv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+=rXw0
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/clustal-omega/ChangeLog b/sci-biology/clustal-omega/ChangeLog
index 91b907fe757c..b2a8a32a1fa7 100644
--- a/sci-biology/clustal-omega/ChangeLog
+++ b/sci-biology/clustal-omega/ChangeLog
@@ -1,12 +1,12 @@
 # ChangeLog for sci-biology/clustal-omega
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustal-omega/ChangeLog,v 1.5 2015/03/28 17:44:56 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustal-omega/ChangeLog,v 1.6 2015/04/07 14:32:30 jlec Exp $
 
 *clustal-omega-1.2.1 (28 Mar 2015)
 
   28 Mar 2015; Justin Lecher <jlec@gentoo.org> +clustal-omega-1.2.1.ebuild,
   -clustal-omega-1.0.3.ebuild, -clustal-omega-1.1.0.ebuild:
-  Version BUmp; drop old
+  Version Bump; drop old
 
 *clustal-omega-1.2.0 (06 Jan 2014)
 
@@ -16,7 +16,7 @@
 *clustal-omega-1.1.0 (26 Apr 2013)
 
   26 Apr 2013; Justin Lecher <jlec@gentoo.org> +clustal-omega-1.1.0.ebuild:
-  Version BUmp
+  Version Bump
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/clustal-omega/Manifest b/sci-biology/clustal-omega/Manifest
index 3210b0848979..df357476b8ec 100644
--- a/sci-biology/clustal-omega/Manifest
+++ b/sci-biology/clustal-omega/Manifest
@@ -5,24 +5,24 @@ DIST clustal-omega-1.2.0.tar.gz 1156741 SHA256 cbf5ad4e1ce88641cca307be1edfe95d3
 DIST clustal-omega-1.2.1.tar.gz 1164492 SHA256 0ef32727aa25c6ecf732083e668a0f45bc17085c28a5c7b4459f4750419f2b0a SHA512 1aa69e319f999f7cd746e2d2ffcafeafc0eb15ed4777abb5b32df63a39a23fa2091977efccfcf9428468103b8e48c4ab0a3ce3967b9c55daaadf3a6a3b57e8de WHIRLPOOL b079dcd659839a85e7772b717ef5dce25b816f2c96eb0f6eea5a4a53f2abd25fb4435291f2a7b739d72d94c06fdbd9c85300ff4cbb03b2861d31d1ad3d196577
 EBUILD clustal-omega-1.2.0.ebuild 868 SHA256 5151d20b6ee900e22185a84ea27b25cdb361d7f59ce8c0df9f42b04ef3e46deb SHA512 6266e621bcd554e2c2573722e42a5ed08719d547ce9c19a234a57c20e66b537178b15d32e01b1ab3c9ab075fd6defe13b9bc486be30b6a82ca5c73527a8a7b6d WHIRLPOOL b5cc872cbd3c4b93ea234246b4fe4738e7e9f1f06919d8fd3815848daa8c7c0780b71182c8665e92a39e8c0aa977ee4d909a224492d4fc39fc2e5001485805da
 EBUILD clustal-omega-1.2.1.ebuild 868 SHA256 dd19139c58a5f2b853ca328b8ae8022a2e07a9ddb1ae0681a4c5e89fcb22b4ca SHA512 b5e3714b7d7fbd85f8fc75864959f8b2e8235ec8a1e5809b8a13ddae1ce674dfa15c6be4a9f612e7f2eca6f866646892d35389d46d6b2a040769563ea32263ad WHIRLPOOL b3c56f208700a8fadc3810023c93b9bbe2d4235a06319a278a0f04a65b10ad08563cbcba1096e224a949738c432cfc7aa1d1a1bad63e0bdb2a5d1efc11f08d6c
-MISC ChangeLog 983 SHA256 a0dc64d1963312b0d021f116fca2647838b59794076bc25d1ec7c22e1c5d41eb SHA512 f51d84dfe73c7a6db5dbe6ddc10e47e52d5dc6f1fae61def17331851f9020927d413baede820684dbb25a74eac95c2585780ec48a34143a6c6179d1fbea132af WHIRLPOOL b9bba5d7c7219171af19c4d9a28805ac931d7a627bee63ebc6c49a941321f5da639fd004c5aad4064a40739da3c1bdd89a8de21016ba8be87fa4a95e4d3f9ba6
+MISC ChangeLog 983 SHA256 9bf682d936740ca31893c01086365cef2438a6b6179f00fae9cb724067e2774e SHA512 d07bfee9607202f8a18d60eb8e47f4d4d5a37321dbd6d9062f9c4eb40cec4c30ff22213a4509ef0881d3575d4fa98d3d9feb7f02d31c4291e08d8ba32c1738a7 WHIRLPOOL ee5ca31af996575f881ac1fbf570280f72a2baad8229c6a60e3c87ff5f4e02072295be6f31becbcaf146e49002b275a32ebb770a41c3eaa042e42f062c1ded12
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVFuiZXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+p/XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirAjQP/1aKiDA+/5t2T0gO+F+ME3Aq
-fmM1/SuiT1jEMr9jdIo2IlmNOCldtWX9hHPWpUZOo2XFOi4Udt+/QNnEu0QSBZ9/
-X4iZEuP22IXmULs3FJ1tNa9HZ+KWOrHnJrE5Ky1yRWL+833I47RNC0tUB2c6CdqV
-xkbZF6vqodsTdOz9W/WiEvA2+T1BeYMRHHFLzXGzunb6NRDDhBGVwPwaTdvsEBbl
-Q03xiW1jx8nudG3IC52OkTTdzifHBpTyoB1jpRgPlgk76xxfVsrTwaEBTnhgVdao
-KWW7Ald65KluCOu6gXscq2nTmvG9q3cO/4VxjuZn0hVkq2K100VcU1WD3RAaFgS0
-hgSIwAidUIPVILDZEFhDYwsjSmEzt/yubus5hy8+ioXdsrxKGlQsF0V7eVzQxZ1e
-zhGAk88n/FVM+mxHzGJ4jYURevCkOB/dXDk9qoDkdN9URycfV5YoSTNhCsCDQLhy
-LM3MDxGp7c+rwAPK5jBWqwg0DYq1Cfd1dhOeBjwSJrc7OvIS+EpNPGjYLu8a5u3W
-+yJHQp+4d+FoDeARmvEf3nPdaRCgFMShqJ4W/Pg/BgutRbDqwT+MwGh7DJADP+pD
-9iF6QbOMAEm13QiEszSFukcHy2xvfngishhf7s7RGI0Ak0XctN7ePbKuzeSLs2gh
-XhHqiBottXbzOu5qA8r1
-=u3Eu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+=I22S
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/cufflinks/ChangeLog b/sci-biology/cufflinks/ChangeLog
index 82f626232c94..281a6b27c28e 100644
--- a/sci-biology/cufflinks/ChangeLog
+++ b/sci-biology/cufflinks/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/cufflinks
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.11 2015/02/17 09:57:42 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.12 2015/04/07 14:32:37 jlec Exp $
 
   17 Feb 2015; Justin Lecher <jlec@gentoo.org> cufflinks-2.2.1-r1.ebuild:
   Drop missing patch
@@ -18,7 +18,7 @@
 *cufflinks-2.2.1 (25 Sep 2014)
 
   25 Sep 2014; Justin Lecher <jlec@gentoo.org> +cufflinks-2.2.1.ebuild:
-  Version BUmp
+  Version Bump
 
   25 Sep 2014; Justin Lecher <jlec@gentoo.org> cufflinks-1.3.0-r1.ebuild:
   Fix dep due to uncompatible samtools release
diff --git a/sci-biology/cufflinks/Manifest b/sci-biology/cufflinks/Manifest
index 95492df0191e..e050b41682a1 100644
--- a/sci-biology/cufflinks/Manifest
+++ b/sci-biology/cufflinks/Manifest
@@ -11,24 +11,24 @@ DIST cufflinks-2.2.1.tar.gz 766280 SHA256 e8316b66177914f14b3a0c317e436d386a46c4
 EBUILD cufflinks-1.3.0-r1.ebuild 984 SHA256 25c75628ae1fe3dff59e99b2ec868022dc563fb1b624037b0b50daa46ea2a102 SHA512 d5c0a353bc3049fe7bcd583e6e47f1620996ff09aa22e51a4bcb44fdb5d9bd632b673d373270fe9c22301b901a9f50cf108a006467f2a8e973e02d44ca77fac6 WHIRLPOOL 24912ef51f89ec90f853484824c74eb941d4a4bbdc92b71cfafb97e818c386684b0c20b4bc99af48ec441658b7d764867cfd8892ec93031c18e451e43eff9474
 EBUILD cufflinks-2.2.1-r1.ebuild 1163 SHA256 3a9d1213fe34b2566f9c0932071d98d9a740f1f163c6f372cc1c6ddb67e2f4b7 SHA512 03336ef3932e7ac751b60e66e66b44966099f0140d6ab1168f94b34952715ffb29c0b52561e66202a8891dd8940b532ecce7d5f7bf34ce6a1feace4ab2a6ff65 WHIRLPOOL dd3459635f0ad27b0e96c3c2a9bdfc87a67b30927de9b9c6c265b5a2eb1848345cd67ac782c2142603c1dd8ae9728bc1cbe8a728793ca4c3a02f269b685dc387
 EBUILD cufflinks-2.2.1.ebuild 1019 SHA256 e881101a668b5fe72d5bd24cdca1a33c67076567173cdeb377207753a7dc2768 SHA512 5b66475de50c242128a193ffbaf23936cdc7a36701e8920552b590f5f186166fb496a556985f0f5e412ca40750265a5dfe8650670d0f86a7440f7aa82cc053af WHIRLPOOL 58870c18b67cde5b1fb463ed4ff78ce952426b59f4feee7853db4962820ac02b51fc45abbfea8f6869a79ca6d59cbeb5d109f9376e0196fab3fb9b529c2e2167
-MISC ChangeLog 2124 SHA256 2230ee4eb68e76624ecac1767b901c62149edcc634db9b4c6d068a0ceb020924 SHA512 f782e92fd6c2eb381549a5365f3c97524d112a054eb1c5e1e76f4e057c317270bb67fbacc808ea4f5eacd660db5ccaa16099a00adf30933e58ff03741451fb1f WHIRLPOOL 2ee1c4d20e7e1d102421eca97c31d158aabab4ec0c96e93fdde602176831c7b97ad22abda920b17e1aef439a1056df8afca226914b77f12d27c7fe407f8417b5
+MISC ChangeLog 2124 SHA256 a1c5876fc85bd35681d61a2f8679365f556de35dfec2e9605e18b0e0016fabef SHA512 ed23958452e90447dd9f58c8bb2ab65d367bd44cf74f09ea00840a40afb3ba1c97c2df888bde5e46c05ed96cce7e2a54bdce0d491928dd0c1d01a6872c88036b WHIRLPOOL 3d087552cc441da6d0ae23f1532e04a79e7aa8862088d74079fd823f26e66a806637a56f547b8f674d5a602d160c1ab51157772bd726f765e0373141154c437d
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJU4xCTXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+qGXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirktMQAJSwMg3xvmh1/pkHATf3H9Hb
-CkAEUo9+6+RioMHi7SiaagA5kJm9eDVFZV+qyfsO0SHHsriC3zpp2zpapl3kTHar
-QSR9XWHNY/mzDApHV0A1xeURvC8bP5M7HmaWNnkuYGbjvZyKe5rbpigzEpsZX1r9
-Xw/867+iNru88zYNMiAa0Iw5zHzzoKGn7CvawK6o/IFN+JH9i/v+iPg5YfF7dqj+
-c23Bmz/PGmAz87nnbtzSQJLSe+VrsUBjQZDs0as2u51sjJxx27M3s/IfAHVDfDZq
-J5tiOfUnBjBjwloHv/qZyQW7d9S0XnoRhdZOXGsgQWkr5kpGa9VT7Rd4hwnOy3/O
-vGi/J31OkK/+uF+aDEDb5IPYs3TSdFq5pt92XRB8dKhaZgPqcBFt38RkZfWKT+1t
-z1g78DM0mQUeUUJJvmdvBZne2OrpMKbcrR0vKFUJQ0rCBjUSqD1q9I6S3WfJ3P06
-0PezoKSz64Y/+KkiUJPOfSp6f7E86MSQKhyonqMrhyt8Hpwsw8HBociR1YRD4zE0
-vkVGj3CSMnsOoadWeD1yZrxhOkmugTRfcOwszVhs1urdhbDBVMOQ1doOwoBXV/vx
-ZTzdA/ITmjSKwMVKiGyqdQWa/84s+MnUvnuUcMS8mUfDjgpoFG92ai8PV5PhOT07
-YFZt4H0UBxW4p70J0HOx
-=VTqI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+=B9tZ
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/express/ChangeLog b/sci-biology/express/ChangeLog
index 51bc0c74b08c..2c27140772cf 100644
--- a/sci-biology/express/ChangeLog
+++ b/sci-biology/express/ChangeLog
@@ -1,12 +1,12 @@
 # ChangeLog for sci-biology/express
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/ChangeLog,v 1.6 2014/10/13 07:56:29 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/ChangeLog,v 1.7 2015/04/07 14:32:44 jlec Exp $
 
 *express-1.5.1 (13 Oct 2014)
 
   13 Oct 2014; Justin Lecher <jlec@gentoo.org> +express-1.5.1.ebuild,
   +files/express-1.5.1-buildsystem.patch:
-  Version BUmp; thanks Michael Schubert for the initial patch, #525188
+  Version Bump; thanks Michael Schubert for the initial patch, #525188
 
 *express-0.9.5-r1 (05 Feb 2014)
 
diff --git a/sci-biology/express/Manifest b/sci-biology/express/Manifest
index 5f3c7f30bc78..e63f514bbd0c 100644
--- a/sci-biology/express/Manifest
+++ b/sci-biology/express/Manifest
@@ -7,24 +7,24 @@ DIST express-1.5.1-src.tgz 931166 SHA256 0c5840a42da830fd8701dda8eef13f4792248ba
 EBUILD express-0.9.5-r1.ebuild 997 SHA256 d1ab3a8718d05712b0af04b4e666afb4e9c1d2376844ceb808987a20599d09df SHA512 d02fc2a69ca11293c1353586165e62d4998ecad105381ac6a605e75ba4ab1dd571973c950423fd81f4132372c53c2f4ddc9b39e4588ae8db68bda36b5ab3b2d6 WHIRLPOOL cff63f65c16bd626017de1ddd0533ba728dae51b09ab102da81e8b3cb991740d7762a7730efcb10c71cd49ff6dab06104fed9662c7e5b656655ecc11cb1b061c
 EBUILD express-0.9.5.ebuild 954 SHA256 954e8a1e60051ed5ab3abc476d27337f0dc26caabeabdc4301a0508c3bd50424 SHA512 ab4019ec226ef59582da0b8781ec27451cc466a6bfca0ae22785eee90bf55675802d00cf165a5bbd8cc58c1caf65dbec7b964c8a5682458692934e7c5eb87c34 WHIRLPOOL 434f44957d0d313d513e2ffe1012be1349bda952d5adcb2e89ff3d71979a3888445bf22485e135b9f6f4c2dd67ca6d1dde9cce628614bc6b960c61fe9cfabbdc
 EBUILD express-1.5.1.ebuild 819 SHA256 87426e6282d2d3c7bb41a62b1bee843b1be39ef20cd17346092e868b98a00114 SHA512 c5e92d86921b9bd010fec18d328ab1fae74484038582193893825a532f5f73a21cf09a2af2632fe9e6eceee12706db97367b8cd32b3dbc436ecc083ab805d6e4 WHIRLPOOL 72e07f881155ff0257f331f3064c84782ad98c8c9618c28e45fb9c0fcec54434671528528b3bdd4915f1838445873407ceb6b415bbca33089d19a4006d84e303
-MISC ChangeLog 1224 SHA256 100b04b9afb59ff8e22d0d69e9c0f2122111c73a200d3bb0d3490ec8e6697a24 SHA512 6d93e311ab58e528286a6f6100688400c6e84dda8925d9e1bd67ec92c163ebcef1c42ad43f5826ad49ddd316674af72096d66fbddaa7c74da112a71c2cdcf711 WHIRLPOOL e4d79a18280cbdeeb2e99ce6483543bf23a6b2bf4f8c9f69435b0213dc15db278b5c47ecb2eed52413e5fc879173736d182665f5b5038775ad416dcb8218f415
+MISC ChangeLog 1224 SHA256 0bea782411fdecc57379bd8bc4958500ad4caa09ce82d4b0b7c2289f7a94d19a SHA512 816c7aa3f3d8936916c2e34cca498de37683558da6b8e3eb781240889dfffcd01c51939398b70ef835e76140d9c061c47a85142e0f96ba06067f8c7ae37e5c02 WHIRLPOOL 863134e26090629542ac08979f8f4f3c331481ca272b10cf63184c28dd9369452ede360c1db066abea748825fbeaa867ae8800fca5e518edc6fefb205fba670e
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJUO4WsXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+qNXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVir7wEQAIZY3mRqft8S+Hfz52NT5JSz
-nb2z9SluDkXdxEpSRvCNSuiICd6DhRXrZcHIlmTaUoFrUsXwhP88oMqo3bcjiEqq
-ey9vPNcXra/cIp5I06XX7fHEDBoW2eMmiLeqPvbNAIHv90tiNu341twGd0kF7hf+
-ebQ6u+5+HZQf4RVVq2bQbRXoBO3Yu4rE8ZOYrTfF67SNPrs4wOLHISlJdOmoeubL
-z3S8tHrALU8w2wMUsDfrdxjyOHr6RtexUc01p+75b+4Rx/BoWxLS/kNzgV1Wj+1K
-Ezxwhm27VKW77N9A6a32egq/vzHq4rBQfv5uGhqdqKkgn9IofHcFKLW6zGCcbd1a
-Yd2Q4FoGctdjdZs15jv4KNddMsgfWxOY4gNRvhe6e5YqYdUFK0Qb86FROsnGtbyG
-EXDp6rdf3w+fqqkIMTZrBxh6BsiIILe4PO8qWwUd5kx5UAlQKWWTH1QOfirM0Ps+
-KEQb2ah1SmSUTCQlfyvVNSJK2KaE3XDoMLX46Ol9hYsDr422OjrhPMH6tnCWe/v5
-HTkhsidufTBOheJn0+7ggkyBnVJTaK8FB5U3FG3h9z0QQrUBPq8Wb5W0mUQElyCc
-1AQKfbpsxYp+Jjv4ggYCw/FFj80LdE2UhjvqmpX5PuPp607qALp36qspEVJ9Ztl+
-TSVQLuLXi1dChh8iPYia
-=WFAO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+=1j0e
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/fasta/ChangeLog b/sci-biology/fasta/ChangeLog
index 0fa58aa0e77c..bc5cb52d89a3 100644
--- a/sci-biology/fasta/ChangeLog
+++ b/sci-biology/fasta/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/fasta
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasta/ChangeLog,v 1.10 2015/01/29 21:20:44 mgorny Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasta/ChangeLog,v 1.11 2015/04/07 14:32:54 jlec Exp $
 
   29 Jan 2015; Michał Górny <mgorny@gentoo.org> fasta-35.4.10.ebuild,
   fasta-36.3.5e.ebuild:
@@ -10,7 +10,7 @@
 
   11 May 2013; Justin Lecher <jlec@gentoo.org> +fasta-36.3.5e.ebuild,
   +files/fasta-36.3.5e-ldflags.patch:
-  Version BUmp
+  Version Bump
 
   10 Dec 2012; Justin Lecher <jlec@gentoo.org> fasta-35.4.10.ebuild,
   metadata.xml:
diff --git a/sci-biology/fasta/Manifest b/sci-biology/fasta/Manifest
index 71de97d4beda..0158eef53100 100644
--- a/sci-biology/fasta/Manifest
+++ b/sci-biology/fasta/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX 35.4.10-ldflags.patch 1036 SHA256 21b6c290ca565c50376da61cd980f21f7a96598ea5da046294321d8d6be5d5fe SHA512 8136536c7f9887920a045dbcd04fa9d01dc0a3b22ed0a1771df715e288d6c889d87b0a6d0f52c947b54185f6a5e92fe902316b502074200a13820cac9dfa6594 WHIRLPOOL 35ff6b7fba2b8f16eb51795c48fd1636708155b1ad405be62850def9934a7d7556644ce808360375b4e658098ada81d7d89d2c53eb04f020d4af2aea127c8100
 AUX fasta-36.3.5e-ldflags.patch 2781 SHA256 baaa544d74ec1367875c96945fc5046182b6502be8d5565806b6c4cb81ae819c SHA512 5424bb8385def72ff75701c2da153f697520cbec82f36cbed8de0e98f93d399de660e79da7700ab0ff688fd5388cf9f42a30ccc4359335ae02042bf8cbb3aae7 WHIRLPOOL 1cbb12763b22e4424d953562b7b681ccb6fcbb58df0772a9ad73cb7c28892dae7afd09626fc275371c762eff73f143390b478ff84ad9d1f7f524dce77ff8a4f5
@@ -7,24 +7,24 @@ DIST fasta-35.4.10.tar.gz 618971 SHA256 60616963093784d2e41ff9c125d68d7a43bbe411
 DIST fasta-36.3.5e.tar.gz 943763 SHA256 92f44a0e0e13bcd6782489f2db42044d7109a9071d775fb0435df24288be90c2 SHA512 ddfcae36dadd7e2ed5c8c8c0bda2eed077e9f6cd55e4ebf507690671af156358e9da4e7cb1406d2b8713c326c54a9d829fc25e668b16dfa6df48d18e3a009812 WHIRLPOOL 803cee2c7da8487811b6aa9776bfa737ab35c4de2f76887915ab285802a738cb073059f4122379512195bd54ad63db42c61059587b6a2aa34550774e57f9f5fa
 EBUILD fasta-35.4.10.ebuild 1466 SHA256 54164f044fd4f9351b99d0f6a7627e0727449894918643895e371c12d49b71b6 SHA512 556fe4019894690a9b73ef058fe9c8c45942546bf727f119bc8e10b4cbb42b8503e9547de60b271845879e8ba74408b267cfb13f4bfb55bc6c1a6759616e53d3 WHIRLPOOL dac765aa2302adf1a675e244fb2d69c0539cd97724b8cdefc03085da79a17ee60634e0dd684193671306cd6721b50a290f7bcc6206e4cb634bccf8b3401144eb
 EBUILD fasta-36.3.5e.ebuild 1738 SHA256 a043646e834d9e56066abbe6362ae347d6e611cd9659efc310c9cdffa08cf634 SHA512 1bd4f13e883723ba2cac659c6995929ab9cd578db745317d224b4a3ca846549b4bcef793e1a13404f76ed600f9fdb96977b498404cf647de50e3bbda040ec56c WHIRLPOOL 5b482f464f34abdc71d2f6f63ccd85772530e3984f730c19d27b7dcc450fef1fbb0e0350515e6ae5dc80f8393a0c71e9497565e8572961aea7af1e612f380135
-MISC ChangeLog 1498 SHA256 a6994fa4e30b47a38e6ac2a01580f46f8e029a5713448afbbda06189b339e417 SHA512 05b93e9e0cea4754c3070793ea1aee54d9c7baf11e54de3865f95ed4459cadab0b7c7058dff34842aa7992a2b0b2403f463a03d165ad90bf545a515c8011b9ba WHIRLPOOL b6e56cf6f1b352e20e775f4368217820924cccc30eeda9828d3a876d35ab3b919943537ea9dbc2b2badffed2b6b3069fb196b625be3739e4d0d5139994b8134c
+MISC ChangeLog 1496 SHA256 0a0cbd3c826f7fd604891da3d3a5ef8afee3e7d61f843f6cc5af9b8981000b17 SHA512 20a918d0095cb7df79811d272df82439a4adedbe6af9045e742283a1e9a4885cdf1353aaa00bbeb6f6ab9c3e661890d7ba751021964a3af300634c45a3c71527 WHIRLPOOL 4769fe648579339bba258b023d63515ae40ce41f52847bff59e9201a0872c32365f6d103296a4e3cca3c92cac346a0fd83e27cb59462565762d378a77cedc04d
 MISC metadata.xml 314 SHA256 0b3407f27cc0f34c599f9e93093bb2ea5ed80701942f38b327fcf4a71e3593f8 SHA512 c8c9b9bbd59ba0dbae64b994f7c7e7839a5eabdb1eaf1c3b6427271fd3bc048711852b98ee1f041526395ff58c96f4d040c4f2e7c87a8584129991a41a216650 WHIRLPOOL 11286c17eb1013b5fab18034a58dd3c46ae634f17f9c1e89f2783ebc6e39c863c9d864ac303f96e9d4857b1ec2cfdec85741aaf3583ece9fe6846025c456b2ed
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2
+Version: GnuPG v2.0
 
-iQJ8BAEBCABmBQJUyqQuXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
-ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQ2REJCMDdDQzRGMERBRDA2RUEwQUZFNDFC
-MDdBMUFFQUVGQjQ0NjRFAAoJELB6GurvtEZOrkYP/2xsH8Bw7Ez2M9lVCQFbwogR
-C5/eDL5XD+hj9OELkLyFZQwgaxZ9rKVTdLny7ytQJtGdiUp+btbHEuEh0fW+GxQl
-4n9iECliE5uZV0SXQnnLI+ZTuxNc0Rkqbdqv6Tu9S6Oe1icORUIiZMGye2cAbx/6
-tSluTjmUX+UD5RxmOlRjojZ1lQnm4XM8758TQu5/b8Dkar6D51LywRy3Rb0o13b1
-j2dBtCNoaAX1bjvjoER68uQ+C2IQgG+eWmjnsWFgUucvDwmGGyx/OerCvVIK2rPU
-X5o2Sz60e3UwiT5cVupaOFyMEy/KLKukOw+4OZvMo2xZ3fYHq7tPOxnaBI228XnX
-ySp5p+PKhWgtS73K+xx7/PfIYtJVzthplhtJ+arfQjMDg0Ak2W/ztQC4UDreqT5K
-m0zufw3ExethCt++dkZWuQ9Ltxa2HmFL3cCsazaPlEK5vK0BLs2x9dvg+3KgHBd7
-SW9pLQtbsIo+nm0v8SWfBI/+FshGUumN9iFCGmrGLSgnLMvyl82EEfAaWDXNur9G
-DOeLjvj48AMU60TR4aUOUustefSJO3Quikp2lXDc245xTrj1PtmVKh/zRk6O8bAe
-0NtktIiC164FbJf4N6DywJ/bL5G0q0UcnQTGSC9HVZ4RBUg2ql/GDVeTfRait0D0
-sSRAYwfVJegW23Hc2ojy
-=uzAC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+=u/ok
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/fasttree/ChangeLog b/sci-biology/fasttree/ChangeLog
index 7d27ebf09e25..0ab601466a9c 100644
--- a/sci-biology/fasttree/ChangeLog
+++ b/sci-biology/fasttree/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/fasttree
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/ChangeLog,v 1.6 2015/03/29 14:30:36 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/ChangeLog,v 1.7 2015/04/07 14:33:00 jlec Exp $
 
 *fasttree-2.1.8 (29 Mar 2015)
 
@@ -8,7 +8,7 @@
   +files/fasttree-2.1.7-format-security.patch,
   +files/fasttree-2.1.8-format-security.patch, -fasttree-2.0.1.ebuild,
   -files/fasttree-2.0.1-asneeded.patch, fasttree-2.1.7.ebuild:
-  Version BUmp; drop old
+  Version Bump; drop old
 
   29 Jan 2015; Michał Górny <mgorny@gentoo.org> fasttree-2.1.7.ebuild:
   Switch to CPU_FLAGS_X86.
@@ -17,7 +17,7 @@
 
   20 Dec 2013; Justin Lecher <jlec@gentoo.org> +fasttree-2.1.7.ebuild,
   +files/CMakeLists.txt, metadata.xml:
-  Version BUmp, #494662
+  Version Bump, #494662
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/fasttree/Manifest b/sci-biology/fasttree/Manifest
index 0cdec5f68fb6..e0ec18eae3d2 100644
--- a/sci-biology/fasttree/Manifest
+++ b/sci-biology/fasttree/Manifest
@@ -12,24 +12,24 @@ DIST MOTreeComparison-2.1.7.tar.gz 13523 SHA256 aea482d47aca528026cdf86fc96dc59b
 DIST MOTreeComparison-2.1.8.tar.gz 13523 SHA256 aea482d47aca528026cdf86fc96dc59b7a9f66ea33b9e974f5c007b46335d174 SHA512 24d2247650d7728942bd1d987b548cefd65a16b433a3810876613e9fd1cff223d4349ee720b3d8d10a73af220c2c9f59a24d77ad34ff009325fe9f22aa35c72b WHIRLPOOL 7ed1009d622ce77c59cf79078a08a08dafb281e87a6ae99be7b7fba9451f2748bfd7a51036c041e3667ea8e29f7545276b799d708aabb7ea1988ea443f73f475
 EBUILD fasttree-2.1.7.ebuild 1308 SHA256 6f04fc0be3f01edc89f6f88e15346cf781139cbd2a3c1c809182ec8c68445f22 SHA512 0bd4859eee95c69d39fbaee92bd2550c5bfc4bc2d896afcc877e80511bff214a4069c85bfc2b0919bf6389430173460edf75349c7dc3def8a2125466e4f41b66 WHIRLPOOL fef8beffdb116954c94c80024aa2c3eaa76fb22ddb4d3382ae4161296e8837be65a5935115409ce1b72ee4b8c8a3c440d55d5f953dde95e15ded63e80b5d6d50
 EBUILD fasttree-2.1.8.ebuild 1308 SHA256 49f2a69938cccb959a4b72d12fc12bc02a8b6e2477e628583fc0467297a4ea3b SHA512 3bf356ccdd85da7d0ad41cf7883bd5d88e73dc9a41b5d73a578e38b5744b9350b696bf450d7b610bc46be8d9f994e64c5eacd60691febab2fe93c15c7a8af42a WHIRLPOOL 67ab63094f275340b8b46dd4951f45fbc9d572cfc97c536e1ce99ff2a6036e95f7e95552af675bbe82ece01b12106e53a7e815f91841488ec30097394b05c6c9
-MISC ChangeLog 1290 SHA256 05f80724b3da0f3423b2f8376bb652e8a8c57388406e5cb0cc12297180614f3a SHA512 9a7c438c763d774bd64523f7f55f9e04bdade2f141b75a60f12b03a31e6495646a9596b33ca90122a51c4f6673eacbb38e9a708d71a5b1307c261ccab0f1560d WHIRLPOOL e9a5f4fb7aceac2c9622b55ccd214ec001d7c9c483840e41ee8a89a47762bf69816b47bf98833b6d540cf71876e215bae2acdfabfa46a1657f76303c1d931393
+MISC ChangeLog 1290 SHA256 c0b03009337ca54c217ec9e069dc341c1c8a349219855e5fda373105ebee8bf7 SHA512 d4ec3707d8fa481d694029b269a0d7f92257d6c2581b137d352644b2f14107c4426e76206d1d6aa509c26c14c5f9425392b9895cc4de065edae175ec3cd292af WHIRLPOOL 22073ce775747e39be358c3dca47324fcec8860e7edf867fc4d4bcb9bfaf33b63b95b3ec39de8f54c1703e7e55f199c0fb0276ad23608fc98c6bb97c948a8d2e
 MISC metadata.xml 315 SHA256 3fb5d83ebb92699b2a8ef0efcd99ce41389b6561a22ca457b88745238a887dcd SHA512 4f3de85a5d5f6fac19f34a125ded80cbe4908ae8d3a385387b4742766bd6447c661d3d8df676c8642289a63ee646677c346687b9428153550f9e74e2fe961f80 WHIRLPOOL 4a28481b281c50749d53412ffd3de0c409b849678232662e9b6cb41661bcf946ac5daa0db8bb623985d46f8a6407e1afc0b573f2a39ca18c7b6d2c44278d3ac6
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVGAyRXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+qdXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVir7b8P/3LBjj6mXYewUwyMvPxrXnWi
-zGKttnjRFMkLD9OHsTsnV6Wvlc2SbsiH2k7RkkPi4aaAckBkky15vGuNXRGYib99
-StbxbrJOVgSkqaLN1qmSTXWFpap66r5WAQJ7rme34tI7rY6cVNwqNoJXcVQVPXWT
-ZzOFpJeH7KFrw+1Z33acki82p8wKGRmWX0w7sRxeq78ODQJREI2oRS+y4PyRQL1u
-WZu5uSY06KSTCbXk+wYCn89NZ8IBSwiTFsf0gW8KNoHpSMy+AXkfaqQ93Kuy6Phk
-kfWKZc3zj6PurBVnTXrujlSjGoWn7dJTl0PC+D6TqYFULv/soc+YLXu1EICO/K2j
-8Zevl85OY5nO+tZCpbztOZgmQrTEJqlzLFcUMo4oCLkLXCmZnGC63ipR3ARTnu/H
-XRaT9xpFTcDmu5IEARiUDeFHCYCAzgowRQYOAzbmWBWvD/MqtOfOOBOUaTXz6Y0q
-YUVfMbOrH2lOnshboRDkTaXWltecEM+5tzGKsXGIC01RL3oTzGDwycn6P33KeMuj
-N+wa3jptGitOd4ASDQj8zjp7u/lIsue+HkBEck3Br9rdmmbQIraymiG4evY5Y2Nz
-yA9AXKV0Wy4vRwsLVnUOlGfvvfUrjzhzldc3VYpjNclRSGkY7F5ylLdbReDtJkuX
-pJvlWhG2wOeJAd8sHeX8
-=t1xV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+=9cH9
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/gatk/ChangeLog b/sci-biology/gatk/ChangeLog
index c90933d00e07..f36805013c0b 100644
--- a/sci-biology/gatk/ChangeLog
+++ b/sci-biology/gatk/ChangeLog
@@ -1,12 +1,12 @@
 # ChangeLog for sci-biology/gatk
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/ChangeLog,v 1.7 2013/03/11 15:25:21 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/ChangeLog,v 1.8 2015/04/07 14:33:05 jlec Exp $
 
 *gatk-2.4 (11 Mar 2013)
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> -gatk-1.6.ebuild,
   +gatk-2.4.ebuild, gatk-9999.ebuild:
-  Version BUmp and move to MIT license
+  Version Bump and move to MIT license
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/gatk/Manifest b/sci-biology/gatk/Manifest
index 09dc6559a912..4335445a3031 100644
--- a/sci-biology/gatk/Manifest
+++ b/sci-biology/gatk/Manifest
@@ -1,15 +1,27 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 DIST gatk-2.4.tar.gz 9106774 SHA256 db0be90ef5182866a1f936742fba20b317ce582556e19acb69de2a8894f7383a SHA512 9050fc2024d0b3c9a6b5617787831c0496276bcd7318a872f6c1128c31fc31c6f59429a1b189e5c2cc740909b42d846b5e041f8626b03af3a80442294db34ace WHIRLPOOL 1fa7a73f317db82c313ea112ffaa6466c2b17384f1ad8d06c74a3f4764dfd822f036cc2dc99890c157fc2c32ce299a4a7d0c73cafc72dd7ad955d75053745b2c
 EBUILD gatk-2.4.ebuild 1019 SHA256 1c8266f26be86923790eacc3ff676d8f6181a2792dfe0516b1cae05aba29a6e9 SHA512 26db3af580e557826fc3d524e3d850747b1ad52c9be6058a45688d51793e0086bcdbd213cb6849bf4d6942f7f03a3690f3b2e5c5058df6b7f0bdd27f413abae3 WHIRLPOOL ce7c222c0d7a8fef3f62f3715797a45d6ca49dfb50cc8512b3c98c813792992766a99457d8f5da7e86936ceb492665e6ab54ffbffc66aeae471fe62bfcfee575
 EBUILD gatk-9999.ebuild 1005 SHA256 8634b5817a8b47733097f9120026d04570d81831ef49033034bca63c9620fa8a SHA512 c198b83f190fb426a491134cc543894a9930f9fa8df30495a984941c38272b1b008816da19b3fb4793bc81f68e150fa1ba8175ebdc0b6661ec75976f1cca88a5 WHIRLPOOL dd0de584edaf52ad4066ca74d857a6d60d9922f524fd5bda6c06a3cc6c2f4f7a479f065e3f9d066d500e6930831242c2c07261cd625f58d6f1d9fa4718227aec
-MISC ChangeLog 1270 SHA256 b7fe1387468aff544fbbdf286d79bdbd6d1056abad7594e963a26723dc2a5168 SHA512 282b940149ff808320d632869d9846c7e9201438cf13676d8e9ba924f078a7e5b16b0d4475e2007834f4a7cb137787f124891cb2afd29ae6e00aa2950089206d WHIRLPOOL 2d514cb36943fa908ca1bb30be5a205c6e6e9cbda14da6ca1c904239bfcbf6d7f4ea1ec66e443ae72802bb737c057c7c6d1606fdbb0dbb700dff7e6b5fc97008
+MISC ChangeLog 1270 SHA256 9aab10f16c8e6afe3e4ae601f67c8effd9f1aafa2686c27840afdd359ea91f44 SHA512 02f5130b2615c68a952a5374f0401535e0cb4a8d7aeb8b420a6077caae8b6423dc480f9b88aeabdcd21ffbb9ad6064ad2b4d498827f42fdc83368c4ac848e035 WHIRLPOOL 53b1dab0452dfb0bcc7550ac3e16080ac7d8e647b61b02dc36ae10571404eca4198379ae84b60a3dc528a14b722c52b0159d8ea2e0770d32167fc2e53fa3deed
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.19 (GNU/Linux)
+Version: GnuPG v2.0
 
-iEYEAREIAAYFAlE992IACgkQgAnW8HDreRalRQCeI0b08+nXbT/g+RwpgmFpEK2v
-5mIAoNLzmkiUddvg/+z6xRUrjmw9WKFN
-=dBzl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+=zjxm
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/last/ChangeLog b/sci-biology/last/ChangeLog
index 58561dddd721..497e72a1dda8 100644
--- a/sci-biology/last/ChangeLog
+++ b/sci-biology/last/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/last
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/ChangeLog,v 1.25 2013/08/11 13:43:00 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/ChangeLog,v 1.26 2015/04/07 14:33:11 jlec Exp $
 
   11 Aug 2013; Justin Lecher <jlec@gentoo.org> -last-146.ebuild,
   -last-162-r1.ebuild, -last-184.ebuild, -last-192.ebuild:
@@ -23,7 +23,7 @@
 *last-230 (20 Jun 2012)
 
   20 Jun 2012; Justin Lecher <jlec@gentoo.org> +last-230.ebuild:
-  Version BUmp, allows to compile with gcc-4.7, #422573
+  Version Bump, allows to compile with gcc-4.7, #422573
 
 *last-192 (10 Feb 2012)
 
diff --git a/sci-biology/last/Manifest b/sci-biology/last/Manifest
index be7edd3b1ffa..fba60db90001 100644
--- a/sci-biology/last/Manifest
+++ b/sci-biology/last/Manifest
@@ -7,22 +7,24 @@ DIST last-230.zip 418077 SHA256 8d55ee95e05a08afa72690df9086886e97142adcfbf750cf
 DIST last-299.zip 453159 SHA256 cc68e9c0b5220da67fd0239c9663dc0d1a05e63b337a6c98cfef6d5c38d0c54c SHA512 74e89129cc17482ec1a99e2d940ca62374c130fea2fa53ea7d2c3703b6ca5751f348110909d61562c4839d8fb1793619c2f41c25c8968b3ab53f0c7191f4a00b WHIRLPOOL 12e826c22c2d91845e89aa0c6e99af785973e8a276dec4f97ed292e144327c7c58024622d3f7285c6107bca7af1bf3c29a23ec9d22dc88ff5dc041a0df96f3ce
 EBUILD last-230.ebuild 814 SHA256 08445da0155a58cbf9424604e2fbd1da495b6d533c3e9387f0af4a7314cc3233 SHA512 d033f74084ae54747cfe2d73384cfd6d3ccd2eba39358f2306a2d46af0d491db47a46429087cedef3150dcca44de58360d727f251ba1bf38fa242b7b8b9f021c WHIRLPOOL 93c3ffcb7995a52a68cad48514d3b65596c6a6c20f1e0bc727a37dff9ab1182bc9c15dbb1fe37ed54bb82d1772635a102c7be1f9c7121748751ddd98f1abe133
 EBUILD last-299.ebuild 949 SHA256 5658129bfb98431ab5a07a2829eafc8fcb9c1eee986ff8787bdebb0de3fb7329 SHA512 889dc18c5228fc83963a13b0b1347fd2b28cad4a2d0e70379b2579bd356f6fe3ecc03b99c8dd4471c7e94a4d18cca5b1fc74e760805536e6be2cd763272790be WHIRLPOOL e24956b5cfea65ef267d9c76467e007ccf2f14847d005362860c7cc8362b80b2bc3a28100aeed53beb8c53c68a1458eebcf5a53ab11bed43b58a8a5a905a3a55
-MISC ChangeLog 3150 SHA256 2d6a9b5c64e8f7edddb08a7dc0bdf8d3e2d7711ff369d109006e6272d2a0d080 SHA512 bbed814f96d8c46eaa43d5d615eebc010c041800573f268f8d9dc4a14cab53ff1a45afc620cf5f287cf4e514208e59bf2637add9e4c43a9935b681c3a9217905 WHIRLPOOL 5512f585132778a0157ed0438f478b9aba3abae7273265789be03d755cefad73a0c1dca906eae62048ae9e1b02baa62e91a37238eb2bb1fcf768ce34c3555e50
+MISC ChangeLog 3150 SHA256 2c42d3d1fdc154ec7379973d7474c413a1f420c4d020f769bb0a8dd002736e30 SHA512 7e0ad595ed79bdedff0fdce75315bc0e394dd662fd002a973f783eea7bb1374e10890c495a074f4aaa49a426d6e02aa9d1370d54dcc33f0aabe7ccac7c41093f WHIRLPOOL ca9860e2d3c349637fa8ff7a6f45bb545bb78337eeafb39cf6f737cd4fe8196d0356640c019aceed06cab1ca9031bb2abe81f1886c82189ffea94675721cde4b
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.20 (GNU/Linux)
+Version: GnuPG v2.0
 
-iQIcBAEBCgAGBQJSB5TlAAoJELnU8jG9FVir9/EP/36vLTzKdXqO1bJ/6myMnMoE
-lkp26J3SwM257IPSv1mRVReF+GVwKdyfybepkliVuXQNK8nLvhWYOPdOLCi1L1U5
-hZMpZMNxBLBhaVytcZUU5YLvNwL2Gr3yeIQseazjnksPxOmLwV7ApRj1rjWyj1Jy
-008hXxjhND4/kRYiB1xEz23/y4lm//Dhv6pjLuAzpOf409cJPoxFNnxv1MN8b4hb
-DVbZ12nOs0QUzeW/0DvwuvaPh6RPVmz/Rb++XFelmKmza2N6+3BfLy0nQTywH7Zp
-eabBt+8wTrDlrYKC5xUmk9DLau9WiJVFPru6sEUxT8wuPclvK5bAFsg97q06ZndU
-s5LohgjEDafEOybOJR2YLUsb9k9kkEGGS1lCImFbUYFM05fVRUFKCTkJeeFj6aBg
-zF/NKB3Oui6tKOMNZZhvZXJy0/wwNv4xwJSm0yEsrW8YXFgRQPJFChOnC0EV+FH1
-99Hezhhd/LUOxp50DxxIuJ1kRG2rh77/cvSikY7tDPnd+xzwOkRkE/PKOCQb+tCI
-qZZzgw9N8gDGfQfwSuudgUxtYAR4Jp7QGjmOyTuDXTi9Y/ZW6VvwPep3PKlUM2/n
-L6HCAIEXW/CKnKBesl89Q0V9PuYuU8j3MWZFq+tdcXlyGPkEsOoTROUML+iopQ4U
-5IabRanxBOWrz9v6j25A
-=q7x2
+iQJ8BAEBCgBmBQJVI+qoXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
+OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirNZAP/3qiJy9qBLTVN30tEmZ2nFp+
+utiibX2VU60RCwhQPtD4o5FN2lY7WNGygLLcGaIAeQFYQ1xHQEDiIC396//ouySR
+84OFAfzL2Akt9PGTf0TDuXD0BsansnUlJ3K8hG/3AViy1P4wWhCMp3pEBLiYzVMY
+hnGZ4cwYhimJeQiNwrbzuU/yi3M2rmn0pvfoXUkpzvi8kCvbRueOiENBYnAqH77P
+UebDjc88ySF0EGXne0uVNjYFbdFUCzuxc3+3luE4g/XzBp2fo9zYJ1iHOl1ICENf
+qj4+BYj7O2tYcCDV/RXH4uOE3cCRpBdYDEbnA8qL4kHvzgQc+6WJS+llp3eifTNx
+K7iRAXabH9/6gW/lhY7x6DoW2dww6eyU/0dgTU6HReCB3hosU17cPJeRPwSIZfFF
++p5gf57X2lTBa8LPKwnP4agJ5DmtjDpaexa/peM4EMFI4yw3w6tnnG40JGoRqgbY
+KDI4xIJ3FQUa0JlTsQHOdym1Dly9hUUNKtg/jkel21NLj2WnCreb/EzYM40oDGSF
+rGxVgiADPykXsFBsd9cFQVgPY3rx58mtYDLGqDYEyPYLz0ZE1NqDQqw4tJfKz9vv
+9TG0cQ1A0toehTm+9JRGVqsOk+iDkZEKd14M4WNjIxPydiXhB5OL0gHb9x5rJvdw
+RZFdetrFJ349NTL7Wvp1
+=/Yl7
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/mafft/ChangeLog b/sci-biology/mafft/ChangeLog
index 57482dbec986..45bbc432a17b 100644
--- a/sci-biology/mafft/ChangeLog
+++ b/sci-biology/mafft/ChangeLog
@@ -1,12 +1,12 @@
 # ChangeLog for sci-biology/mafft
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.21 2015/03/29 14:48:58 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.22 2015/04/07 14:33:17 jlec Exp $
 
 *mafft-7.215 (29 Mar 2015)
 
   29 Mar 2015; Justin Lecher <jlec@gentoo.org> +mafft-7.215.ebuild,
   -files/mafft-6.240-mktemp.patch:
-  Version BUmp; drop obsolete patch
+  Version Bump; drop obsolete patch
 
   19 Jul 2013; Justin Lecher <jlec@gentoo.org> mafft-7.050.ebuild:
   Keyword for ~-linux
@@ -50,7 +50,7 @@
 
   21 May 2013; Justin Lecher <jlec@gentoo.org> mafft-7.037.ebuild,
   +mafft-7.040.ebuild:
-  Version BUmp, drop unnecessary die
+  Version Bump, drop unnecessary die
 
   29 Apr 2013; Justin Lecher <jlec@gentoo.org> mafft-7.037.ebuild:
   Fix USE=threads make flag magic
@@ -72,7 +72,7 @@
 
   15 Jun 2010; Justin Lecher <jlec@gentoo.org> +files/6.811-respect.patch,
   +mafft-6.811.ebuild:
-  Version BUmp, keyworded for prefix, repecting multilib and LDFLAGS
+  Version Bump, keyworded for prefix, repecting multilib and LDFLAGS
 
 *mafft-6.707 (27 Jul 2009)
 
diff --git a/sci-biology/mafft/Manifest b/sci-biology/mafft/Manifest
index 0cf106b650ca..80b9c754a3d2 100644
--- a/sci-biology/mafft/Manifest
+++ b/sci-biology/mafft/Manifest
@@ -7,24 +7,24 @@ DIST mafft-7.050-without-extensions-src.tgz 380375 SHA256 29ddb276bfca24f5815acc
 DIST mafft-7.215-without-extensions-src.tgz 393239 SHA256 22099e42274ef0078302d7cb87180880ee5fd64ef15fdcafd8c95d0018191408 SHA512 1a44b968e2f9ac9db5d17487163a38a7138dc784e63b3aa4082ff6a16c8e168edd09948e2cf182bc7a466802d4a07bdd7ab23386e251df13520acdfb69ebdada WHIRLPOOL de43ba4107e3c1149d5ce47085bacc996393a7ef73535777439b7024eea1dce5f28c1b3c7e518f644345b7b5ea5e70fccbcaba18f16ecb9a6f5f5c31a6b5dca4
 EBUILD mafft-7.050.ebuild 1905 SHA256 3949ee9a5a0c3f006a55911db257bf76021d771b22caaac5fed5c3d75db1d145 SHA512 5cf23b2f11c0d1fae8e9b6f8856a7a315594fa6d2318cebf347493e7f002035a98a4a86ea49b5b837f94eb85fc514ca895986c007c98fbf8f99fcf8461ef9f45 WHIRLPOOL ffccf95094ec7c59ffd3ef56f43486d1cfe9c1fa809e201605207880e33d6dc9284b69dfd806ac54ec4634534cd77ee6818c476275b51c6956172a083da242d4
 EBUILD mafft-7.215.ebuild 2083 SHA256 c52113c6a652fa5ce1e1bb58d50ac0323e26084bc185fb0905b115083d2f0bcc SHA512 8c8a2a86a801d6745bca54c93dd60ff006a554d69923c05272d075cda3cbe7241a0ca4a2111c5a1f633d2a6df58ca295e136585830565f1131732ac30c5e7971 WHIRLPOOL c204abaa673a374147891931f2b541cb08e93ffe50a4c94f103ca8a8849e9927ea891448300f2cab9be21a6e6931ee148a5ff8f1e801322e846c0fc7c8a471ba
-MISC ChangeLog 3687 SHA256 1f62a5d8784408af9aeefa03fa7b03bc8fa07c1ad552bf0a36e91fe6cb3378e9 SHA512 f1ec6859e657ad67b5ae61b23910cf564077cfc8d837474ce6fffa0199a523c219be123cbeb260c80c73c8bbe11e7d478764865ff2562469a8110d724cf84f45 WHIRLPOOL 6e1ef4419c83a38d7c36176b06a3ae376e2b318edfbca35c8d5dd59c1f9df70a2b6fd962eaf3a92f5ebb9c7aef621efff222c23b64f70b4a5fc06593e0902162
+MISC ChangeLog 3687 SHA256 7e5c263f5f5688184747193a40017a81c7d4b80a06711ef97791be44a3403fe0 SHA512 a14fa1a5dad989dbd48d178b0456119f1d3830f445e19f7fa0ae0064994ca6ab1f3d918582a891dcef2446b646cdc834828b7cf8b6f547112c9f751149529050 WHIRLPOOL 11ede631dc7d3f8a37258f601709f07144773e59295e31fafb5cc1aeae0dd366417d4950abd7589aa558e80033f43e91bddce3b5ee66b53fb303d0f896fd151b
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVGBDiXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+quXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVir3bcP/2bEiGsj1S5JBqp8VPuPg64P
-4DI927sBdV7AwwfHkLbHJxoEwtGlcWB/DdW768H2QCDTByD0BATypIdy+JPHUBKd
-JaJV2MqAyTge/uL3eWBVq776uMwI1jl6JEzStBEkI9gdC9R5zygzBJyTgc49dfmQ
-VWsHE+sIMLtAlnq4IWLcM0AW2U/xktar3t9gZtlEwQ/t3/+ZOJPNowzsBNUC/AML
-NgqVXFJqyZo2XJRpYPJZ1tOSEhtRTapAae/Q3P+16BcmFc5pJ1XLZxvX2YWL3QkJ
-Jt4KFr4o6i5OU4UVYecVopneYOah6HN8OpvKVjs84l+z8+7y/kbjroRvQyz9HN2L
-m21R9ZbkV92OCHFjAxybra4U3UwtqmI7b5Or1ilX8sGo8u9Q3SFVc3JShYWXtikK
-4ZxOJbBpq+h61dg3lDTxXQqffWx1PlbU9hhn9AOFvF/mSjblqjNiLygxxEYksSxJ
-SBJsryVWHkjrDhXsobmzs9918ESosnjFNLy2sSNNn0PgyWnrYstcSN3zJsCOepWe
-Tfy/fs46dXehRUbdJxtowCzsddGcG7GaDLt6e63PUMj6o8/+0LA2OFuceluQdY3g
-E/S6RxIkI3TkSWcT9QSlicznMyjtl8Iq8R8oDkREk4qmskCn+bH6+Rm21Uksd7RU
-pMtNBkMnIMpeG/HnJ0sR
-=c7rn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+=kGU6
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/mcl/ChangeLog b/sci-biology/mcl/ChangeLog
index 281a97c65c79..280fe57c87e4 100644
--- a/sci-biology/mcl/ChangeLog
+++ b/sci-biology/mcl/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/mcl
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mcl/ChangeLog,v 1.4 2013/03/11 16:10:00 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mcl/ChangeLog,v 1.5 2015/04/07 14:33:23 jlec Exp $
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -9,7 +9,7 @@
 
   17 Feb 2013; Justin Lecher <jlec@gentoo.org> mcl-08.312.ebuild,
   +mcl-12.135.ebuild, metadata.xml:
-  Version BUmp; move to autotools-utils; install docs in right place, #296893
+  Version Bump; move to autotools-utils; install docs in right place, #296893
 
   26 Apr 2012; Justin Lecher <jlec@gentoo.org> mcl-08.312.ebuild, metadata.xml:
   Move to EAPI=4
diff --git a/sci-biology/mcl/Manifest b/sci-biology/mcl/Manifest
index 85145075df78..62b0ef586c96 100644
--- a/sci-biology/mcl/Manifest
+++ b/sci-biology/mcl/Manifest
@@ -1,16 +1,28 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 DIST mcl-08-312.tar.gz 2749006 SHA256 0061da0661e99f783d97e6ae10149fe5ce11fa332b24cc8a4a491a072867bb6e SHA512 9f89f81af398710ebb9135c93653d892fc9daef360d70f3b890a3133d8a17dddffe568b110d3370602cead895562bc0dc5a71020834b3b3e9b6d2abf4bf64b0b WHIRLPOOL 6d00665c545edb55605fb0438cc79a412150e68b9c63ffc51c93f8f8c33b9bcd6e4e5e435b3be89a64407a0a8f6f1b8e77567f653e45c08f1675dbf2b9e0b59e
 DIST mcl-12-135.tar.gz 2970824 SHA256 3f5e0e7ad1074c7c4ef0139aa3318f92971fede7292dc3571eca2fd1da20a283 SHA512 97234e88f3430f223e1f303577b2b8853f40de6b204de415466719f691f529a795b17bf2fd48d4cc73d05900c87a10ba9afabbe54bce9367ee59215e7db0a8f5 WHIRLPOOL 1505643a460ba5bd6b834d070278a108fba57c9dc2a90a72a8e0726bd54a1b8fe3e4792a63397d58db62b036d22c325db2dd76f696a8692473987395c556a279
 EBUILD mcl-08.312.ebuild 784 SHA256 6a3e9a24cbb2ac622765f26c70f3d259d61e5015ee1972bf47eb09a2e9e3d23e SHA512 47f70630061957da5d10fbb8e5bb0fb293c1df22dd789760084cc6c8a32531edcc1b440f22266558ec0b0048a7e7667488f44af03a9008b8a0cb6bfb2015fffa WHIRLPOOL abd8f2bfa8f094d6de96f13e9c6250f7d1bbd811099c060f3d2a47b744ac49e702b63e0307be76bce247e224f01bee3abbf057ef4df8aca9026a4bc9e83989cf
 EBUILD mcl-12.135.ebuild 784 SHA256 9c59e068dcffb5a2030bb45c930c42b630fc32b3d45b369b86e35159184208fa SHA512 aa429907bb032d856e4c1270a27a18bdab2727f8eaa777b8d4e877665dc3b77cb50d480c23491d0a5681a5883b1e4ca614bd746610a0f76ce57fa478e6318648 WHIRLPOOL 23ae1a0531568fcc792d847c291d72e687640ecd087f785f10f968e5ce41331d58b3c934c8bf6c9838e9f67becc2ada47311f4373f8c263c746e248e52101c0c
-MISC ChangeLog 910 SHA256 7be267a37551b5635b2fad03851019cec8246bbe05922bf4d65e41c82a976017 SHA512 3abddc9acea15407ba0029454d8688a6b212acab4a94f3fa85a200db6f67da074d0bc08cb1a957c98501fce4a84749b3ef393ea9d6ce3ad88eef65d823b26f56 WHIRLPOOL 47150bd40841e579fae889238ad05d0f2e49d7c115ecfc9877ed0c852ae1c1af9f12f868358c75ab53b8e15e0a6b7a5e688c965415c6da381b13a417ab3a1171
+MISC ChangeLog 910 SHA256 af9af086bd09e35b484f10cb43a649c4a398ae12ba7ee99de86786c312f182d9 SHA512 e615f431461784a2fef5c9ef7f445ef40bda238ed47f07a277acae33ec2e629b68d98cde0a9ea99cb3f32923ec71508fcc4047c36dea9e70f2fd81ac99301354 WHIRLPOOL 4f6659d92ee95f174e567038cf33bf7e5c99b36fb29b98f50275c3924b2f33d30ad76c5fd711a96eb3262bc2de0974c8690fbb487c50d6633039a7309599e4f5
 MISC metadata.xml 250 SHA256 ea9d25b745430659384f8aa69120aeb58828bea47b3e2a1f4938c698a7386877 SHA512 54e8e8985d7b44aa200c234ef9199d39a44c22c204dacd4fd29547699f9dab3dd7ca0c3d7b32a958d3247c5ca7d29b2ff6386e92a67f895908f00b1647c03173 WHIRLPOOL 2b5b463ce4c30486b3dd0a07f2a23f0e3a1ed1c4a9360ef53fc5f04737640f3d8ea3fa785de2ed009ce5c12f10252d9c07a11e5136bd2a03d88b27a64768b4f2
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.19 (GNU/Linux)
+Version: GnuPG v2.0
 
-iEYEAREIAAYFAlE+AdkACgkQgAnW8HDreRbHwwCfR14+sgnssqB2Q9ba8VDBz/SB
-LsUAnj98oEJFUWVjvNkJtGBrG84CUDk5
-=wj2e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+=NC11
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog
index 49f73987aaee..42555055d887 100644
--- a/sci-biology/mira/ChangeLog
+++ b/sci-biology/mira/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/mira
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.30 2015/01/25 17:04:35 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.31 2015/04/07 14:33:30 jlec Exp $
 
   25 Jan 2015; Justin Lecher <jlec@gentoo.org> mira-4.0.2.ebuild,
   +files/mira-4.0.2-cout.patch:
@@ -9,7 +9,7 @@
 *mira-4.0.2 (23 Jan 2015)
 
   23 Jan 2015; Justin Lecher <jlec@gentoo.org> +mira-4.0.2.ebuild:
-  Version BUmp, thanks Martin Mokrejš for the work
+  Version Bump, thanks Martin Mokrejš for the work
 
   23 Jan 2015; Justin Lecher <jlec@gentoo.org> mira-3.9.18.ebuild:
   Add workaroung for m4 dir location, #536172
@@ -33,7 +33,7 @@
 *mira-3.9.18 (07 Jul 2013)
 
   07 Jul 2013; Justin Lecher <jlec@gentoo.org> +mira-3.9.18.ebuild:
-  Version BUmp; fixed compilation with dev-libs/boost-1.53.0 and some libtool
+  Version Bump; fixed compilation with dev-libs/boost-1.53.0 and some libtool
   versions, #450322; thanks Martin Mokrejs for all his work
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest
index 3928325c828f..e64d7975845c 100644
--- a/sci-biology/mira/Manifest
+++ b/sci-biology/mira/Manifest
@@ -10,24 +10,24 @@ DIST mira-4.0.2.tar.bz2 10368046 SHA256 a32cb2b21e0968a5536446287c895fe9e03d11d7
 DIST mira_3rdparty_06-07-2012.tar.bz2 31656 SHA256 53cbbb9d57e2fa51706b3f1d055621c0863091542b8851f3ce8a45850951d7d2 SHA512 4d4dbdf7ab5126f9d47160bee8bc127b6a225de8087f6b9914c754324a74d966333207c86a3f38cf0ea9f91408707e2a24086dbe1318fdfa2870b0c39bc5033b WHIRLPOOL c9946ddc032d6864a33e7a60a4d1a515262ca2204535c7d81dcc73144b4f471f766007082d1912fc4ca219a9cbb4ac5a485451c625a7ffcc1949fb8574a3f3d2
 EBUILD mira-3.9.18.ebuild 1979 SHA256 14a5fa4f5d6659fbad572a10de8d4f11340ac111a8e0b681818acceab94792ea SHA512 f63805561a477dd9878a3c397aeefb4bb0f393be5f14006c938e63d97b5f1093c62797838d2f15cccd7af91060fa56ed8fbdf307d358f5d12c141de6041ddc0b WHIRLPOOL 5fa51e5e01c71130269581faed7cd5e457e7431340fd7aef5ef60541c8d5f27144922adb2ebdf345e95fe7c3a6dceea0f429b22ba5d73b39783e7d530706bf3c
 EBUILD mira-4.0.2.ebuild 2287 SHA256 573e276f2090fa15f625f64faf818312d55accf58b8b816334f18ad6606eb83f SHA512 46271a03642784f4b334485888605f1f7a984dbc938421d17d9b72f85f064901d312084a1002f3f5373cfebf4730cbbacf2ba494565a6bf6cb12943d47e45dc6 WHIRLPOOL ce5e660e5a261b6c6c0a63183089688dc0a4953782750797aee1cb6121666de28e0a3334b3fde1cdf5f7fe59c737f51ab02d53bbbc86d6625e57062c7cbd452f
-MISC ChangeLog 4159 SHA256 4bcba5cc6861627084ebfff0f732ec294fe6252c3da861387303e6539a362fde SHA512 dfcd736446f8fe8a22934e92343ebf0b90a4e42afd7e8037c3bd50c5f487a1c5023e95fb9fcdc60460d361c43da7d06e0d75bb01db3b2187602ba789571bfa96 WHIRLPOOL c72e55d7d42412e5c800cab0b2f56a776f79a91b97eb5ede85b9a12d0ef1d22bbf93908df8473210299c9817afe5ce65ffb8d9de76acf8c82913a8eb3e5a666e
+MISC ChangeLog 4159 SHA256 795db09cc52f03375feebfaaefa50ec6a76794b6915833b2807c6da2a79d522f SHA512 830dba63d9b61a8d5300b1dcdb2cf4622b68135c9390dcf2a18735b10521c889e45e5c9bb4ec056ff1197abbf0d04ce3fbe5d52909fd5d7d54e509dce607db20 WHIRLPOOL cd08a05526315fd19a75d70c38aca63cb05eeb10a73e17cded7ee8b7dc21def9864eddd4e21dc807c00d920e0669246122a142299a27ef454e708930994d30df
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJUxSLEXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+q7XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVird+wQAJJF5xrD53WykqPpHhQ0j2lQ
-bEMUZWCs1aXLMAp/hqFzVOSaqpKtRLus3UaUaG4ljGHCU15BkRtM9VuiNi3P1OFI
-NO+wVe74aE4kYRXmCS0WxzKjXUbx6koKq5zlZpuRJeLiyUbO0RMTaHdr050EmJiA
-mU8wNdA4x3/Hd7rzjVOKeK9m/VcpAqFPJSaVgucCxV9ZsbGYRxHWPtks+xHmzgBX
-+W+lYE4i1/Ybze6EeBteLo9EJlpRm7OCvMuJDjx8eylaSXe5pvIpW/iAO64wtxXh
-MrjULi2uV3w/gNXhCMB5NBDzFtUgSSqy/lIURi9vDodqnICEG2yO2+I6oNONIkIQ
-JBzrI5bjAmO3hH89x1TamIICekTJvHYB7dWeychNP6F7GDRqPEEdBrF5m5z6xnsS
-4BQAxy0PJQ1kpSmdyG2EUd0M1cjp+8o64QeZl/fG5iKSA9Kmv/n2po7qGnQCMWXd
-iCJ+XmgYBmTvPcpCppF3veOQj6s4CLmJYdL0Fqr1YjaDvbqQPbXhlEQSv6XqcqKS
-6xASPnaWb7n9EfvU0T1gWJBHPmteYNgFOOfJyqU7wn3Q6ID1+RIFkpNmxXIqIlTy
-mTi5oKwFcORc6So8+kF3fs5B4rAjGeuS/fcnezdaqndDyepL5gI7EBkTF0mxaxK5
-RRiaJjgCTsgPefMiutKv
-=TRLr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+=m2XC
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/mothur/ChangeLog b/sci-biology/mothur/ChangeLog
index 0689fd318a2d..2b37c7e6e2ec 100644
--- a/sci-biology/mothur/ChangeLog
+++ b/sci-biology/mothur/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/mothur
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.11 2013/03/11 16:14:37 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.12 2015/04/07 14:33:37 jlec Exp $
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -12,7 +12,7 @@
   mothur-1.13.0-r1.ebuild, +mothur-1.13.0-r2.ebuild,
   +files/mothur-1.13.0-overflows2.patch, +mothur-1.27.0.ebuild,
   +files/mothur-1.27.0-makefile.patch, +files/mothur-1.27.0-overflows.patch:
-  Version BUmp; fix for buffer overflows, #431258
+  Version Bump; fix for buffer overflows, #431258
 
   08 Jul 2011; Samuli Suominen <ssuominen@gentoo.org> mothur-1.13.0-r1.ebuild:
   Convert from "useq" to "use".
diff --git a/sci-biology/mothur/Manifest b/sci-biology/mothur/Manifest
index 6d2706b73933..33a24fe98d41 100644
--- a/sci-biology/mothur/Manifest
+++ b/sci-biology/mothur/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX mothur-1.13.0-makefile.patch 867 SHA256 7eebb85b1a7ebb69e99d326f99e89a2e2103b7448a03e9f9c3158c76c263844a SHA512 0a94626bffdef81ddfa8b56951166cc0b6896b829f4a670083b5a9cf34ec46f7cb2542fcd04e7169360501b881f3ef8abc6bb85a870d08256e9a57147336eef8 WHIRLPOOL 14c7b91e9bc21d6c0fa4c45b67ac8c936ccb10dd9613b4d55728a08cbd717b695b962232f48e4e4a069dbadd2a1e1179d45f39aa0a0ca53692e6ffe055d349ad
 AUX mothur-1.13.0-overflows.patch 2685 SHA256 caa6044398ebf6342ceb5e064cb7a5576b7d493b63329fb730f60d1a4fbdb558 SHA512 ff7bf005dc27e9ef54b99e2098501b72d181149b8e8bb5be06c2766cea5c6c9c5b2c2ad94d98b8a082e7ee80564480ff53b23110ef47e5eeedb684ff8a4ca449 WHIRLPOOL 73411185f77e15e890238d13406a3a25a88bf8de60bd99efbafefe71bd1f1fe96bd6a90a876d7ac02b972bbd3e15084c77495b43f6b0b958a406da4c3f09d178
@@ -13,12 +13,24 @@ EBUILD mothur-1.13.0-r1.ebuild 892 SHA256 f7e9d30af8c801c3a5c4994a0b32532c87cbad
 EBUILD mothur-1.13.0-r2.ebuild 936 SHA256 c257cf077d44c974ebfc9295cf2450f296f0b88ab3ca5532a086a6b4462c82a8 SHA512 0f701d91871de26477aa995d8e8fd186b3515461436f3917e5e30c72d2bae25172f6ad54a2a321719995edb6febbdc8da9869a3194e94b5b24b2f96483224c9d WHIRLPOOL ea9c32b5db832ebe8d7f029ccf8399f40105c62a8c275d1248c3006afe219b6d02ced4979f3a7329034ab65ca814985e984aa004c5c32cd25946b2d5614eb3f8
 EBUILD mothur-1.27.0.ebuild 1028 SHA256 55af15f8c98e5036710180fb69dbcdd18899b2d6853c8e5576d066ee25309086 SHA512 7281c59263cc316da36f25fd37a299d96167cfc5e63c5add36c2ba09ecc02b847ae5642b95344cac83846f9391abdfd4149f4d8bc3da63f056db8206482dc94b WHIRLPOOL 39634c80afdad5a87016ab5e4a1376869cef9f08035ffdd896c41e1c860a780e1bc96ee6f796811feece81b84c8bb115dbcacc0bd9406a462ff107fd58c84b8d
 EBUILD mothur-1.6.0.ebuild 723 SHA256 c7337c2cf7e5ba513ed6681f997ab50fde5b29eca205dc9bf36235d7a20642f2 SHA512 726f6794a05abcba3b2565746d7d3131352849baeb3b5817c97354b8b3e2f8fbec2459ff1e1a35933bc5eb997ebc15acb8df12d961cd551e9d1a1e227c841793 WHIRLPOOL 78d21046e8ee24a78a051802a9a59dde175855a5f3dcf869a7d1afe311880e4915acf8f3cf97b9a8643e4a9e81319cf41546ba6d091b2782bd98c8879e381c01
-MISC ChangeLog 2260 SHA256 2ca261101dbc023d845f4656c446208a4070a4a42111a7cd43b8deed916a4ff5 SHA512 4ff9ce1b62a90043d6b24b8a5083e3ebd59aa83f80b49818e7e27b288675aaa36777f3313d432e1f563e88b9b65a287637e20eea6a574636744e4c53b88b6502 WHIRLPOOL ba8e32573cabf6e61439c9de865d03726c797403f1fba3bb797fb74ebef9d1f85e49a3b0457a4fc8ab6825ca677a7a833b0be4eaddb8c5b49c3f79a1d798e16a
+MISC ChangeLog 2260 SHA256 1ff9e67e83b831b588e3fe6b2fa71a1862322108c63170e11e465ed2a3bce083 SHA512 ccc036e393f49241671a5fcfd71f049de0b77ca65cece77ca62c8277787830400f29d17be964a40f33925c83f1d9ee7a6bb34c414a6f8301555f6ae4377dd818 WHIRLPOOL 23f452f759f350df7a927e6b086ea73c510acefd51869d28c9dce175bca0c3adc5bc48b5d96fb60004d804dbeb659831d5fe0e4776dab10cc2661d7016aa6114
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.19 (GNU/Linux)
+Version: GnuPG v2.0
 
-iEYEAREIAAYFAlE+Au4ACgkQgAnW8HDreRb/eQCgmklibmuR/MmVl5lG4Syf3zFK
-n+oAoIhDKiBnJ3II5Lowtqj5OzwYTr7D
-=d0Am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+=s6xx
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/muscle/ChangeLog b/sci-biology/muscle/ChangeLog
index 029db5be20cf..9639278b960b 100644
--- a/sci-biology/muscle/ChangeLog
+++ b/sci-biology/muscle/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/muscle
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.16 2015/03/29 14:51:05 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.17 2015/04/07 14:33:46 jlec Exp $
 
   29 Mar 2015; Justin Lecher <jlec@gentoo.org> -muscle-3.6.ebuild,
   -muscle-3.7.ebuild, metadata.xml, muscle-3.8.31.ebuild:
@@ -28,7 +28,7 @@
 
   24 Jun 2010; Justin Lecher <jlec@gentoo.org> +files/3.8.31-make.patch,
   muscle-3.6.ebuild, muscle-3.7.ebuild, +muscle-3.8.31.ebuild:
-  Version BUmp, blocking sci-libs/libmuscle, #308707
+  Version Bump, blocking sci-libs/libmuscle, #308707
 
 *muscle-3.7 (21 Mar 2008)
 
diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest
index 056de7cf20f0..fa86e4fc0282 100644
--- a/sci-biology/muscle/Manifest
+++ b/sci-biology/muscle/Manifest
@@ -7,24 +7,24 @@ DIST muscle3.7_src.tar.gz 189907 SHA256 a028f545612f9d260e35909959e98ae7aec552b1
 DIST muscle3.8.31_src.tar.gz 515267 SHA256 43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad SHA512 2baf2aae354ae1e3f529e627be2ace86e89dd15567e1f642a625b63f08ebe3d4bd7315080c7d786d95e3eda8703545ec74af9fe83ad1523d55d00137fb7274ce WHIRLPOOL daea88aaeaaacf5a2da68484010091ae46c69713659f92f45e5e2096af9e7d8c645d14e5b6c4c8e73e4df35a086dee823fcab6d442cd3881b773fb0113ce897d
 EBUILD muscle-3.7-r1.ebuild 930 SHA256 0379c05b8523067a9f4160278e1bb8e5803df0f0220f2bc0f79f9d276f8f4809 SHA512 52b8763cd3b7f9c948dbfb367725fb6240fec0eda72df38fb3f56369ac5188ac204422ae5ef77ade1c517f4e4c22dc4c990215d2f0ac4f36788874d64b9ac25f WHIRLPOOL 469fef67bbd7f167dc297c55becfb42283a594f86e07e491e73ff15cad3c5b28cf428d86efc1f035993b344465613c6dda003e25e441cabe6613c97db74c3277
 EBUILD muscle-3.8.31.ebuild 717 SHA256 11bd6ce798358e9f0c8c9f12e9c1803b45b221362afb5a405c221bed6b4155ed SHA512 4b928b062941b703e279b53b1d527a75347ae91ec903b45231b2e5bab25bfa7b230dee0bca5af2dcb501537e6891d8fcdcf27489f87d390fd548ffa345ec3ff4 WHIRLPOOL 6acfd8951fceab4459972f673302eccf0803414dfc36d3c38f032a520662c8e684a732b5ae50b29bbda893824cf8d8819e37f3d80512cb759841885f10c229f7
-MISC ChangeLog 2298 SHA256 0faf2ae9cf7cf162fbe151c13ea44c1011811b0abc10b7d51efc8acb0e850384 SHA512 f23bd26e86db3697667ca55c3694c66087123afd4459d05bc4d2cdcdeb2e19cdfa84915f2572e14241c57e609404caa990d17d5f9857a9a1af027f7091a883be WHIRLPOOL ad277ab0a7c6f61dd6a10e900b7258a6f7f246017e4e3321de6f7a35a6edb768df9e3274cea57a1b0e6edcbf3772c556af0e226ee0e6dd830898936c05f9c89e
+MISC ChangeLog 2298 SHA256 4278d72670404da386cc79e25257ad44f226800e0c15456c47cd0a96e764efdf SHA512 de5e3b83473cbc4f1395aa1d0f68b2bd9edd3d66c751efe1030905ea120358ccbf08fa38f19e70001b6407febba23375a232e4284c483c32f79f1f602beac039 WHIRLPOOL 02f8205fc987d2eb94662e7d40518eab26a4ad2bc9a717624ea36cc8508b6bdd6ff33fc36e269ce1e0a289baa4ad9d336f778eb10f749ca05128d927a2ce49a6
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVGBFeXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+rLXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FViryIoP/3lhhgqbvKxhBw1zu1BQW03H
-33bxePx+HozxIzPfjNtskZmM7mLfPWd/Wo4KzctP31HWXw21R21FcuY6gEgi3kE0
-rCcdGAbsNke8FWeMoFKEud84pj6AC4UDlL6am/k8OzOiXH9vUSSH5Rofoac9uaFw
-By3AdwwBJfw18YKljkxH1RjUKeCzDr6qok+miQmcdGx/8RaTF7YNSfdqZJEn7K6Y
-8apgxFJLDKSTphBRSuA44MTFkWPZQp1e8Uk3rjEXtaYl0T2YZlW3S4c4DpdyhIpL
-qETgJzzW9aw/uJbhCx+AFHN9KjvgWtdrkM2kPjwe9bG8qk62v8tNhW1HvaKCu7jx
-ySv24E2u5Z6N9qeKPyI04wKTrlQuFrA+i58aWDz3Jku8pEScEXWUBrDK8beaDmmb
-VmrfIBw3QwDftkqKfZDEnEned/oWbNdDNSSNIpDzBkhKDllqDNyucEc0X1XxO1Ts
-l790k9X+bE4ELJ6AunW3Xu6nouGYBiPXJz42BPkjBBpLY4HprUPqZxKjh9a/Ku+I
-+L8F2TCzQtzQQEOqj14r0s/zyPFODm0DMDfYPg2djzZGbgFTTEvwLlaQXjrtHfvD
-QFB2Y3ge7L3aUpL5W+eQ2LFUu0OjLb0h3ZG6j5MktbpnJ3/k0rHm3nt4KQUlv3HP
-eZZFIj0RdtpCUQ3d8r7T
-=PJpH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+=FOUX
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog
index eee203fe8d09..df35f55caa22 100644
--- a/sci-biology/ncbi-tools/ChangeLog
+++ b/sci-biology/ncbi-tools/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/ncbi-tools
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.98 2015/03/11 13:17:35 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.99 2015/04/07 14:33:55 jlec Exp $
 
   11 Mar 2015; Justin Lecher <jlec@gentoo.org> ncbi-tools-2.2.26-r2.ebuild:
   Add missing X deps, #542558
@@ -68,7 +68,7 @@
 *ncbi-tools-2.2.26 (22 May 2012)
 
   22 May 2012; Justin Lecher <jlec@gentoo.org> +ncbi-tools-2.2.26.ebuild:
-  Version BUmp, #416251; restructured large parts of the ebuild; move to EAPI=4
+  Version Bump, #416251; restructured large parts of the ebuild; move to EAPI=4
 
   26 Apr 2012; Justin Lecher <jlec@gentoo.org> ncbi-tools-20080302.ebuild,
   -ncbi-tools-20090809-r2.ebuild:
diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest
index 843a8563a6ca..5492d9388408 100644
--- a/sci-biology/ncbi-tools/Manifest
+++ b/sci-biology/ncbi-tools/Manifest
@@ -11,24 +11,24 @@ AUX ncbi-tools-lop.patch 701 SHA256 9e5c57e944d23920f196f36912933653c236998729f6
 AUX ncbirc 57 SHA256 6a9c895368ad801c9b04e08486771c7a96f3f26e81748d81d6c088b4aa97208b SHA512 0b9b68116b362ccc625623abf4e959abfb8555c31117216eefe3093fe2dd122c3ce508fe389c07a069d6f4322d889718e455de65dd3ab7d55a16d947ecb07cfd WHIRLPOOL ecd8c2c38b59801273a1392e02df3e6dbd5ed8331847823f69e878cbea74e2b4488ecce7aed4096d095d9912315b66d75d3dfdc1f6276651854dd6b5265ae795
 DIST ncbi-tools-2.2.26.tar.gz 68691452 SHA256 d8fffac25efc8ca894c707c840a4797a8a949ae6fd983d2f91c9972f788efb7d SHA512 da167216b56386b8c91a660e8ea0f3ac39b991d4519af9e02fc26aa16ed602eb3d9d874446f69a8f6840ae31a4d5a29da170e04e8a72b56f8c3ca038d1437014 WHIRLPOOL 6f390a4487b7ebf9d5ca31018f3b33602a695e4b0a4b090952fec9c7e8c3956edc197e75ffd32588f9431cc04b4262a2ca2e3b0ba50dd622ed73a4da6655a956
 EBUILD ncbi-tools-2.2.26-r2.ebuild 4776 SHA256 9830b7295a58b1fc552cefb5655fb75697dabb8428fbb1b50010541077dcf7db SHA512 32de8547c87b26444793512851d9c99b7b282152984198048ef9dc1c835ff58b777e786c3f9516448ecd7f6dc8ab4ec6accbfa265a97117cd3c728d5b960b96d WHIRLPOOL 83450987c9359d5c4025e0688b31ccc92a5a76a09a11d1903585bd3396fbd9551c01230c2c891881daa8597d1cd491625c94c1d589fdac3453b881c21740af54
-MISC ChangeLog 19371 SHA256 141f8ee44e95bb1a5b3ca9fd59e28bc3afb0ca98a08bbc1431cf000dcb5b5c3a SHA512 dfd45d3119bb12cb9b8d48bb32f3c6726d2e137648a0089028f50e675fac97d79d5d61a0930d414643402a5b5a3fdad56ee5e9ce96a261aa56c360435c2c0331 WHIRLPOOL 3f62e4ee0bfef5de0039a29c6f6fae04434c15b39d9c683f6c5286a9dbacfe391cf1a45a6f0a05e139dfa7b6a52141229e77ade2bdde5b92938077e0d5747635
+MISC ChangeLog 19371 SHA256 fe1ad6dc60461f18d0872d550cb87639fa2aa11ef45db9d9576190f2da9461e4 SHA512 a96ef681f1a530cd78c965d91b0779b66e99a1e31e3bab61416a34ec5acef2c0c18cb3caea0aaf16e644999339605fd14106b2d980d7eef5aecef046bc527ff6 WHIRLPOOL dcc15f67e468bb8d5e19fece87472613a5a1b96f7d9272cb11fca8eb1484564cac2eb12c44457e9e357e12628b81ec60427e80b0d906c8b629e0d2502365ecd3
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVAEBwXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+rUXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVir4WQP/jGoKfEMmd1cKaWrOw9+ZKJk
-dGaNog8FYnjzxXgYwbIbh5pMBDhvVqmzQVdGkTQ79lIkFJKKnuVt+xDPm2zh//9j
-Y/9ZY/kNWUd559MV54KJKn2Gfx08jRFzYJifTFite9AEWRG+xKFOyt8DKoGOXyJQ
-5r2plfC6eU6C9s554noKasgAEUFdL+Jynsohr1Dk+8ECfBLU3spryn+5vZyx+lzO
-beO6qhoO9n/+GIEW0mQqPeL3gpHN1cwtGMbbT9Lc2KxNWuzMp8UrCsdrZHyIhy/J
-D62ccbYhc3IpLhGpeax4KCUlQxuVGV73gje/2EIuO1y87LQa6jWWea74fuhB8jId
-tubfW5GQg/TvjVZKReibHkEo+hs2mZavHXlD6LsQG0cpqbSYpMnuz5juRd7VlKzm
-DMilclWwoLbsua5RJ7Sgx6BhEhhcs2F6R4bFNV7gU+us1k2fFvDrkfVZSiYN4ccb
-1SXtaTOLIoykfqT7KQZxGHcl57Gg93Y56OOnBso+KxWjNIgLvly3RLv+3OOBMTqg
-0/yEeKYGIWFJHcNKwqip5LCn3tyVeeC8UYMi3+Hb3fNvNF2p9Nf55RNOXkYlaCSi
-plyDPQhlf4aPU0wptgc2/yvwTip1h+65qrPqwOauGQnKePUaInWNlcsY/L2aqht4
-o9Ktvvj4Who5Y2+0aZoY
-=6BwV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+=ToeE
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/phylip/ChangeLog b/sci-biology/phylip/ChangeLog
index ca6be6ae0a87..b65171c94187 100644
--- a/sci-biology/phylip/ChangeLog
+++ b/sci-biology/phylip/ChangeLog
@@ -1,12 +1,12 @@
 # ChangeLog for sci-biology/phylip
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/ChangeLog,v 1.42 2015/03/29 14:05:50 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/ChangeLog,v 1.43 2015/04/07 14:34:05 jlec Exp $
 
 *phylip-3.696 (29 Mar 2015)
 
   29 Mar 2015; Justin Lecher <jlec@gentoo.org> +phylip-3.696.ebuild,
   phylip-3.67.ebuild, phylip-3.69-r1.ebuild, phylip-3.69.ebuild:
-  Version BUmp
+  Version Bump
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest
index f444e32612f2..9d0425f31deb 100644
--- a/sci-biology/phylip/Manifest
+++ b/sci-biology/phylip/Manifest
@@ -9,24 +9,24 @@ EBUILD phylip-3.67.ebuild 1432 SHA256 d943ae41c07d66149c41d44d5cb541d6ffbef6b249
 EBUILD phylip-3.69-r1.ebuild 1259 SHA256 b569eaf4e6b589b5c3f58b49ed9e0e29002300f5eac8539e1c3f7c3da6729d7d SHA512 221a1a18ab91f984d9e3ca3c360214b3abc4140cf92da204e777570ac08aee8ec4dbe31353ff256b863fde598587e63ec389f6e73cb150ccebd7889d506a93d7 WHIRLPOOL a30b8350b37a28c7b4835855cc554f1f97a3f08a32d00483459c24f7ee7e3792c954022c799bf1539a45bbd6131c7564baed37316465c5a5bdb2edf97819f169
 EBUILD phylip-3.69.ebuild 1468 SHA256 83ec5bf8253997c088603b1b8de28eea11d63a1c0b81cf3fe12d52dc86d1132b SHA512 cd1acfb9d7f2cc7b96774981b10d2045d04fba033a852d78da85711359cdd347087fd3408d9f41a9a27a4076b7f58d6938fa600c6794d6628e856a19cda8248f WHIRLPOOL 5394a2b20a5c79a9cd3eb26e271bc2cc7a16deb3a6162b7b8f90d6448b6add6ec1f63b8a061a3a9159c44cbbea404f115f76d5ff384667075ec2cea94f7b0f72
 EBUILD phylip-3.696.ebuild 1207 SHA256 e724018e03d0834a1c09d5528265e3e8cc069dade85832fb924267f79d6f0a1e SHA512 7efe504111d20b4ca2acb738e441f36fafe4d587630bf499dc8b7e490846d29f00c27d92d3bb1844e92b74a770382aa9562acf3fcaea2a3231cad5e1cb2861f8 WHIRLPOOL c4cb026b41ebb44411a67b63a7b35718cfb4201c433a1673741bf4da124ba7950166399c35d89cf0f6e73518ac142e226657e0924748acc3579d27455a22212a
-MISC ChangeLog 6608 SHA256 a95f1f2de634c8433cdbe193c8dcd10086b9a3033fc645fe03efb968bce68432 SHA512 781ec686b28a42bb67c0b2f077a778c500d87a61abde7b0aabc66fa44f31e43e97f8f215ef9a0bba021931ef5d29842943b1753bba9702e830e04bce876460f7 WHIRLPOOL bd27b20209d7520c3d22549f93a31c95057d118f4572c53af53d1149d53ac1f0d9fb04a690530e37d501e9c4278cc05c0d7ba77235bd18dae8e4078c4fb6fd36
+MISC ChangeLog 6608 SHA256 520a909d6837149ea2d1d45d2970170247214b55a7fb5aaab4679c7fc8975142 SHA512 f97108a1d16f36d9b549cb1f7d76c6a5164a306c2be07752bdadda37449d037b80e299de9d5625e002b2a0f21557ecac1e970486b8e15cb933e90c2e45855dc2 WHIRLPOOL d41064a288ea711b03083c846215dae2ae427d37a5a8d5d6949da5ebafaab8660a2354348bf7cef2f7a233c2bdb7eee94b69f691fd657667a16cefc7dfd5dd4d
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVGAbGXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+reXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirpwQP/A5ZMkVjuL5winAhSmkXBDIf
-Nq0xZ5neKTIw8I8JY1Ots+h1QUM6DPNqS4KhAuUG8+TAwJZgLIBMFkJVD/ajnC3M
-E7BbcNY+yypfu30fbmqymwfIwCvJqJivYlTY8bM2CbtjhpvhTtRwstHKKALlkp6C
-1YG2HrYpT3iUhZInwVoqD7mmFA8VD/I/4ubUOUykNqDdtd18LzdI5ynS/zEot0Jj
-7HOoidI/YSfdWpk/eG2rHbtAfjOeCV0bi5WFxqZWNicuOnbdY3z0cIkNsSh3nf8x
-qRwuQevkG0/LiW91wyhhBxqSPWiXMiZmPE7O6KLi23Lo0vIBdPcZUujcFV9Vxnbt
-GhLHnU9t240Rk+y1XdBVij/+Dw7xOUjdO2USIUoqWIlv5NZ+Pig97+1mqUwjIjd4
-Vr3ph7oUFnRXFQLEEdq/Y57KeDILFRlGNrVwBxn3Aad8VF3SeyDZXDcuIUZvVJAH
-wVNgjNQN84JlxCljmeJkKTj/1VNTS+LgAinARuKjo0s8tAO2YpfoIIZglkc5t5Gz
-QuYPhu0oeFXX1Kd7ZbBDvQmf2u3Wx9XGxQU0CFEKV7zz3zheM+8fmAEC8VmnLC3b
-nJYLEpsZrn8noQ5i5w4r3Vs7ucXD0We0YUnfVuzI+260dY8yfi3AaTv8Ct1ECLcb
-39KHHLKNcTxrjnO5Qwfj
-=tF2I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+=8Jht
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/plink/ChangeLog b/sci-biology/plink/ChangeLog
index 38f0873beb03..92575ce552f8 100644
--- a/sci-biology/plink/ChangeLog
+++ b/sci-biology/plink/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/plink
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.16 2014/09/22 07:20:31 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.17 2015/04/07 14:34:12 jlec Exp $
 
   22 Sep 2014; Justin Lecher <jlec@gentoo.org> plink-1.90_pre140514.ebuild:
   Rename USE lapack -> blas, fixing build problems, #514106
@@ -9,7 +9,7 @@
 
   19 May 2014; Justin Lecher <jlec@gentoo.org> -plink-1.07.ebuild,
   +plink-1.90_pre140514.ebuild:
-  Version BUmp, #510716
+  Version Bump, #510716
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/plink/Manifest b/sci-biology/plink/Manifest
index 86aa115ea6b5..840a59ce578f 100644
--- a/sci-biology/plink/Manifest
+++ b/sci-biology/plink/Manifest
@@ -7,24 +7,24 @@ DIST plink-1.07-src.zip 2257297 SHA256 4af56348443d0c6a1db64950a071b1fcb49cc7415
 DIST plink-1.90_pre140514.zip 822157 SHA256 c6f93153d079b4b7f9ae4a51a3b4dcc7bc5ed60b408d39fce6234b98570b8ea7 SHA512 679f1e136b11f35f1d49636bc44ffd17e72e4e38edc5daa270cd963ca39f7b8a80f31905a94de517059e5b3ea7a6bf518ae34a5c2af8a05c530bd6df771606c4 WHIRLPOOL ebcccc1dc0461afd973aa63313237bfd5d904543785115fa71f3af1925d8bb21da15bd0baf60e38f4da534c8c554202a7af6c642b274ca9a458fc0035c2758d2
 EBUILD plink-1.07-r1.ebuild 1263 SHA256 c9fcf415f3ec686c453a5c88541fad85cbe0a184fcece98dc6481c14ad0d1a3b SHA512 2e6adaa85ad20e1171e6af6e66b087db16bf7c1f42285ffb1aada31759b3f537bd273f8c144ad7bcd481e40432ef0a523037663499c832e3914497b8c6cd950d WHIRLPOOL 5d2a58bfcf2a9116891448fa8c8484c97268254a403f1ed91c7f58185b35662931f3b26a611c77e8312ab27df42f1a48b5624b056f916b33652e1e881053ec24
 EBUILD plink-1.90_pre140514.ebuild 1358 SHA256 d8ba21c598fedb5409c0c1842ee0bc784642b8aefa3369eaf7901f0be5ecb239 SHA512 2f2bb9e55916c94ab4e1d44e3ae947a6ac259a08e698e493931022c4bdc064977bb3d1b2e009155aa98d80c407ec450d3fb1e072870adf3778b021a104143cac WHIRLPOOL a669a1e3148f8fb6a25e5e16125b7c4d446c281aa0a1832f797ab2edee5714dd09e0d01fa18e6ef914b5531e4940a874ebff4504e8b455b02c2949c7bf88a5f4
-MISC ChangeLog 1587 SHA256 d5e26702ea1b4dc9f1d8bfc27992b215e8763690d7430cbffdfc4846769c0f1c SHA512 9b57e4762103bd353f5692da3836eddabf6a9c05dde0846b3994947ef90da5c11a0507a0a6fd6c28a19498192266d02817ea394aa3eda5ebf96669afa113842a WHIRLPOOL a55a19bf6c60e26747740d944c4b2a02d1af0257cd69ec325104380be2f4ee0d1ffaa8b71789e5cbd103553bc33b3ec6fc6cb712fe69036f30b06fbff746e768
+MISC ChangeLog 1587 SHA256 2bc41740a6c0ba65df6e9cc056166f0de857d6d43307e13943a6a3618ba7cfe4 SHA512 69c3e5335964923256dfafa3644450aea0ec6ce8826d8ff296c7e3bcb9d4a2acfee4cd4798b8a0d2c0534d5f86a71df15d3748846cfa1567180ec151b875b9e8 WHIRLPOOL b62cef22366586441326857b82afba2677402bf1fb268a60d4ddb4a1845c84e3e1cd9becc305c825c34a982770ca8e409221ea41557283efd4467f8293cb336f
 MISC metadata.xml 348 SHA256 8a1f2924de09c075cd7469994451860153fa5947db32eef46f83aac2552f4374 SHA512 4c483e275b788e5aefded48d9d404ce390a8c71c7f6a1aaff531d743e6d7e5a71685411c8588548eddc83ff82eb3861c3fc23c69ed769defbed59ce56df3dd02 WHIRLPOOL 2d56efcff46261269c7ec0bff888b0ea4d2b31142f26114727478f234148377de48d95b8f53f024be3cf017a170a36664868f1c5d70357809fbef78cb06a2644
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJUH83AXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+rlXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirIAcP/iOqyUHnHszEmhvdU81AWwM7
-soJNMVgm0H7QylHT97FoxZ6BJxQX05p5V5DVhNs6FhPmZCdHqd+FOzmvv+oe7vrR
-jdubZNUODGQODGRPUzVnudarkUyma/7z1vFY8RoVhu/0zHc05fwa1CH62N9S0AQO
-5p+0Xhr2VCnyYrB6vJIpUkf5JImv0gVE8olGpDMa+zdh+xZUcZaYeEJGOS4BkM+j
-UmzPYWDtAc/6N+x86kpZlAu97fMY9msqGVP70SFrUH1yOO/DID/PBeGrExcP6lhA
-Qu5kdEWs/l+L+UnGW52j59fz/SgQgNBl1fM8AlyBlg881ENqFySXDvL3v1F8ne7l
-z5XFYBP+T1Jlv2KmAb2OZ7JIrgGPCa2ZUS7MyghA5Qd6mu0BxOMz9AhdU+0JoSl6
-x96hM6Xu6QZv+zTZwJoKZBBnHWzsArRm9zkU+eHjQjg3xKG+xhhCQx70wS0ig4Rv
-xezfQCrdDzo8z03d/KKeQrHQSUMatr4Qfsc93nej7M3gj4npoWh59AoN+huycOJw
-BRU7e/8f0h2zkYMUlek+wPxJUa5k7Z5MmhonmUCTQbCbX0Zr7We/Zuij4qkrCSGr
-cAr8xtIKTJ9EZkAHXozSnkIZJeAQasJQxZbKiE7OHm0fqBwBwzyknnrv8vW47rNE
-yO15XWlze7adC/hSiZuI
-=X6CJ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+=iVOw
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/poa/ChangeLog b/sci-biology/poa/ChangeLog
index ae433088c3ca..3e7aac257ab2 100644
--- a/sci-biology/poa/ChangeLog
+++ b/sci-biology/poa/ChangeLog
@@ -1,10 +1,10 @@
 # ChangeLog for sci-biology/poa
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/poa/ChangeLog,v 1.4 2015/03/21 20:42:37 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/poa/ChangeLog,v 1.5 2015/04/07 14:34:18 jlec Exp $
 
   21 Mar 2015; Justin Lecher <jlec@gentoo.org> -poa-2.ebuild, metadata.xml,
   poa-2-r1.ebuild:
-  Drop old; BUmp EAPI; handle static-libs
+  Drop old; Bump EAPI; handle static-libs
 
 *poa-2-r1 (18 Sep 2010)
 
diff --git a/sci-biology/poa/Manifest b/sci-biology/poa/Manifest
index 167c060709c5..1e985a8f39ff 100644
--- a/sci-biology/poa/Manifest
+++ b/sci-biology/poa/Manifest
@@ -5,24 +5,24 @@ AUX 2-respect-flags.patch 743 SHA256 12178e90b6ed7a70e6d436f0ad391e151b2b0a5b36d
 AUX respect-cflags.patch 464 SHA256 851c738b9ecfa567b21f3b551e6819b8ae05db02a3f5a42ae4aa93d55577ed0e SHA512 6c08c0ca957b31d224d255d4e83ae30bfaba8a4073abde8b11be660f7cd1c7d17df67be1a75682016d3b904090d3e165958f42cdb3052090170e51e34ce1fe54 WHIRLPOOL dfd13127797270966e5172d4246ab16c1287677fed729ccbf174cb78594c082c0cd1bfbc8f17105dee9544dc359d7242a58e2948640e240e811ef102003dcc32
 DIST poaV2.tar.gz 62612 SHA256 d98d8251af558f442d909a6527694825ef6f79881b7636cad4925792559092c2
 EBUILD poa-2-r1.ebuild 1036 SHA256 f61fa118aae25e15fccd50877647094ae45abb3324ca386a22fe8afe1edb6d60 SHA512 e2a036a6e07cc88e4cd9c00fb50af85900392e7a1e7de32ff1a81da7d5462b9fed8ad663dc62d5e1f60fa82eb5649ca5833c123eea15ec43fb186390eefc2812 WHIRLPOOL 995c8c0928ed8394d5327007cbed0d7edca2ed2cbe2823fdc7f93ff74b002afc13074f639184ebddb2f51e1c0de1c2016bf99a1d2be0986e94678707a0d7715c
-MISC ChangeLog 817 SHA256 4a57328a7f8ecec16a6e1235c03b0fed6a52a839136db7834f3f6e17aef2fd4a SHA512 4c8a138cee6e93576e33d8eb01f34553495e59ba6b4e8c71da47f8db5d43eb90285d7ca129dd3f6c41e11e25e7f80343cb4582d29320794b6b6ff8f867ead8f8 WHIRLPOOL 61d7560edfa3510030108a08ba47ec18eea6e62fd4600f852eb78a52390190b30bf7ce1da3469b53cf572cdd71bba9b3f299c25ca0cd85357727702dc9158673
+MISC ChangeLog 817 SHA256 1de38231da7348f93a4ce0a70e3777668cf3b276ef48a6da76dca4a4a1458347 SHA512 29ac954a78cdece0447a24cac32fc1cd7dceb68e9bbb6c0eed1caa285cfda16152f78f985f7165ac36ef2a1b82e4b92b590fb9c4efec5d0cf20aac55782529c1 WHIRLPOOL 603f706ededbd456b069ca1bcb5a7582b9cf632fd2ab8e9fd30f78d5a76cce74ee93c27c77a3289ad5ded467823dc4fd07f4fa89bc53c8da338e8f250b5e3788
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVDde+XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+rrXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirQZwP/1ExTIo4x+Jtf7+pZQlC1Qkb
-3ATOewmr6pp3aLO+Gn5gFGNotiZ0aISRiP36zhfrCT8uWUCTh1Gegc+77kSHm8cw
-N70OCiZi27GjeNlcNv4hoLiLEbCcjk0ptYxBWZSiEEMtG1FxfneXSx59kz1Pz420
-0DfXyD20TQVlo40xxi0UWK2kPKnxuTnmzJ0Xq7t3U3ffSncKkUgYuQ0gboBKShj8
-7WU6HTBZll9REZjWhunSBFMBNVWYBu2H3Ewo7JxDw1+Q8Yn8qW7cL33hFGFb1Q9Q
-YbCWqXbzCsiCQFt8dSFKGNvzgNnNSkyVVpWAaSNbyzNw8Qv6AmvhIpAVV6gwj/dy
-4Lswt6UiVJaiTSA0qZJaLxlV3JpG5xQhhZFJ2ki/1MfUw+9OnRfqQfNZFaIKKo/i
-Ue8udLvj4jL8ogAfXnpn5/AhUtcd4bYZf2HUWuQcJzWOkIsMhK78IHeFfIcFfR2s
-I6tw8znUDlZDilZhDMwP/dggRUBKgxIvaoorIrsEAtpUZK/lJdukyXDnfKGBow9H
-0nJMbd/oveLas3/UlohcR/fLreWNg0hyF34xCLYeVH1ebxkdubhTlHZrCePfagrc
-bOIlclBITmcTMsYKYVkL5pcWhi/dRUUhSnn/2pSdjdjABz9fX3+RaM7VbO1G3GoD
-BlenME6JfPE9KtrRGSAp
-=Z2H6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+=ttaf
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog
index 106161304417..27e71fafd89d 100644
--- a/sci-biology/primer3/ChangeLog
+++ b/sci-biology/primer3/ChangeLog
@@ -1,12 +1,12 @@
 # ChangeLog for sci-biology/primer3
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.41 2015/03/29 09:25:57 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.42 2015/04/07 14:34:30 jlec Exp $
 
 *primer3-2.3.6 (29 Mar 2015)
 
   29 Mar 2015; Justin Lecher <jlec@gentoo.org> +primer3-2.3.6.ebuild,
   -primer3-2.3.4.ebuild:
-  Version BUmp; drop old
+  Version Bump; drop old
 
 *primer3-2.3.5 (14 Feb 2013)
 
@@ -44,7 +44,7 @@
 
   19 Jul 2012; Justin Lecher <jlec@gentoo.org> primer3-2.3.0.ebuild,
   +primer3-2.3.1.ebuild:
-  Version BUmp
+  Version Bump
 
   07 Mar 2012; Brent Baude <ranger@gentoo.org> primer3-2.3.0.ebuild:
   Marking primer3-2.3.0 ppc for bug 402053
diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest
index 1ad0392777d3..78e23007cab4 100644
--- a/sci-biology/primer3/Manifest
+++ b/sci-biology/primer3/Manifest
@@ -9,24 +9,24 @@ DIST primer3-src-2.3.6.tar.gz 1667573 SHA256 2ff54faf957f0d7e4c79d9536fa1027b028
 EBUILD primer3-2.3.1.ebuild 1141 SHA256 2ac353686324059aeded1d82531c6a8c5326117457f0ce1c6712ec0961bd2a45 SHA512 53775cb6d4e11ebff12f29d4c4f46fc8872a270a1557f7a7d6ac0ef58ca18329dd77c0ea92ca504a47ef4997dce38ad9818a7840adc5f02fb0c4284be0c938c4 WHIRLPOOL ce1e8eacf50116a12440c8c458aaaf40ad02fbcbbdea6477e2c7f53023c342782aa59aa8929566b41345262919a59f33ed7712dd11cbef4b632228a8e66f65d3
 EBUILD primer3-2.3.5.ebuild 1145 SHA256 0bb9d3587ec9ac38c20c2c51fcc8f5b21be9f2b531b84fc71a420d3535534ebe SHA512 e8685f0a51fb64d8fd4a18922fce6d6ee95d66b2a87c8f47260f46a5dc7bceb0aeea15ebf4a45a7d280df32a5b27e5a1fb80dfec8dbf45f0df178010402cc4df WHIRLPOOL 2298b0a6014fcec8b56f861f3e6abfb39a6c1e3c9f74188485e8fcf721a840f2205cd3b07e868bfc311bcd54b6b5c2a0799c028b904f85c494a6b4852ae2fde1
 EBUILD primer3-2.3.6.ebuild 1156 SHA256 6057281bd575e8d0b746b61d6da06416efe85c81c56fcabb4f9803d7aeb0f936 SHA512 2f5780aa6830a67b3cd07e4fac2026bcd1f612d25940607af73c4ef652e521dbdb3417f84192511629fd322054432b86c0b1dc434964e1bd09529d61f1e66bce WHIRLPOOL 8b9d0689209391c0ec0b888f068f6eb3b3325c4ef40786f51b3f8e4bf62d1b83348516a869b5d70cac11f76fb60b43a0153e88ccb971efebdef1cf30f0abaffd
-MISC ChangeLog 6162 SHA256 94dd4186195241819c06150060c89027cf44077110100f4408c7a18cc72d437f SHA512 434b8df6f3ee04c5bb32d3cb1e76dc97c7542ed6a05c9418265613b36977bb4719368df77b5538b0d19a9f97504caee3ca34e65e21c4ebe6fc4c525efd4eeaba WHIRLPOOL edb0aec485868ff268dcacfefde3a5d2183ff2a5449bb3f222e3b0b126598ddbceefd389a9776f962c4cdee52f22d9f3993f2ebc280e5a61a8659e2636af73fa
+MISC ChangeLog 6162 SHA256 43e931ce4c5d33d006a946702056092ea3299ab666648602f31210537a6964f4 SHA512 a27d68f89abf0759efddea515aaf5522571d4ff4ff8f4ab7aa2608e19be2087563a0cc9bc1330585347e0d1c279565c1fa663687b7e0087847dbbae8b4c71b6b WHIRLPOOL 21669dca37e643a1f3747483c71292aa596057e128b42346c4d47e3a2e36c9bc4d2d050c941673e5668a029cdf974bf03cf357967b823ae56dd86668c0ab83e6
 MISC metadata.xml 626 SHA256 7f92fdb9d901cce63f02bce075366ea0fcd34c54809c6cff6a5074671e528c97 SHA512 cd1df947da6ce9bfc424658af5149a431f9f049938d74b0ff83e5fe585829006dc4c4707833e7b4308242fed6e92b3c83263754aadadb2e22c76cf964c32fc25 WHIRLPOOL 5a8f088e9fb2a29b73cc6ad8da1808314f38f04e611b96a76de1054c290fbb662177b757c8a198885fa03c0f881376cebe95906606279193d2852f443176ef04
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVF8UpXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+r3XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirnagP/2K4LKGgLwjQEBCJgD3YhPqF
-9woaRhsC5I9h7XrCql3OgDWmE9sjzLzKB9bF0krzn0gg+yqxQZPEfAeDMNFKo6ZJ
-99g+/xO75RsoN+AtgM7rc9afDnwYr87lYmuQ/njVLN5Bk8nSIYGoI4sJ1sXb0J05
-2RTzZZ9nD0MxRIxdJirVTHyDRFpblUUR976S/t/WFxXFdJD8RDPno2dcWWm+sbvk
-v2iVo2zC32kqBMI5QvLES0C98uGzlkJaACYG8eHA8jPOIeDnk68YF9wocMU3hJbY
-RJL54Je/o5CQWDu+iokeYTHcIguQvL4/03r848sjhU5w3qOFP4lH+P7CmBA/D07W
-LWp8kSd921hTLDazFBbnFMlqwlZw9bt+xMLxvr72BFTpFM9XK8lerN4lnUxzgxF1
-wkqNiDPVKbPddgQXE4rQokCb4GaS++qcAuhmziiWAiiTJD+NZGxGQq1zpBO2KWEY
-119HLe3Dlh2jVwX5G5Ioqok+TUtJC6bwoiXiRKYsK4vaUAX4uIHxqelNR+icO9vl
-sFHyRsUZSl7IIF99Wti+s2F6ffJj3pgQb7cRbft0Kk+7Z7ADD2hw71NFS4QiF37f
-PViyyjk5YCxcdl06pwITXLnLbFPQUrjlUTSdTCnZyH6tW+LuhZ2hwzZ+OExRQ76Q
-Mn7qYowQ5LxhkslfN9oO
-=RM8B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+=9rMi
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/psipred/ChangeLog b/sci-biology/psipred/ChangeLog
index 39bbff943af5..b8049ababc02 100644
--- a/sci-biology/psipred/ChangeLog
+++ b/sci-biology/psipred/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/psipred
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/ChangeLog,v 1.12 2014/05/14 12:07:39 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/ChangeLog,v 1.13 2015/04/07 14:34:37 jlec Exp $
 
   14 May 2014; Justin Lecher <jlec@gentoo.org> psipred-3.1.ebuild,
   psipred-3.2.ebuild, psipred-3.2.1.ebuild, psipred-3.3.ebuild,
@@ -16,7 +16,7 @@
 
   05 Nov 2013; Justin Lecher <jlec@gentoo.org> +psipred-3.4.ebuild,
   metadata.xml:
-  Version BUmp
+  Version Bump
 
   19 Jun 2013; Sébastien Fabbro <bicatali@gentoo.org> metadata.xml:
   herd is now sci-biology
diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest
index 15eec9ff49f1..637bab56226c 100644
--- a/sci-biology/psipred/Manifest
+++ b/sci-biology/psipred/Manifest
@@ -21,24 +21,24 @@ EBUILD psipred-3.2.ebuild 1298 SHA256 8d11e680e0c9d1608d0742e387b5a06b436fd60f9c
 EBUILD psipred-3.3.ebuild 1317 SHA256 8bf983b96c1f60eb76ace51388dc4950968b630eec9d99ba45c0bcf98333bc2a SHA512 8dc743cf5addea60e6f47ce1a4200d72432d52b8ac77e94952cf4d519da4fdddc4b94b27e905d040ba5a805578d67f724cf2443b8f52fd406d8a1b1e5ab86c29 WHIRLPOOL 53b135f249195afebc3da1b8427cd9e06b5895b00ee2fd991a635560a9506ce1be9be433f892c82b77b005912ce3f8fb316aee4366020e81dd184d9ea53adea9
 EBUILD psipred-3.4.ebuild 1334 SHA256 69b458fa9119fd8ecae27dabadd10bdf1cae169446a4402fc0b407218245483a SHA512 a5da3bb3b25bda0dc54a5b2a20505dac5cc9ecf2b62bbad521ce97bbd9939c5f995212926029f6dd2ae2d980396dd7d1f8bccd4dfa3003cf5aaf0ff902505503 WHIRLPOOL 9e8f51c936dbc867987ec1d193e964e750037b13d459cf0c65033a3a6a61bc3a689dfe632722d598b49526752b970078a4b3956be707aaa44440f119d85f50d4
 EBUILD psipred-3.5.ebuild 1334 SHA256 74ec45d284b7930e1b897aaaf5fddf337f2ea2a3f74b5480621e1d9e4d22f5b8 SHA512 bedb464b7ebb857e57ca92e04d375881ec05ce65ff0b07eb3ab78cbc5f65b83ea9d718462dbb0315510c47cca021b5e200dafdbb4df634d49e0757b52ffb5f3c WHIRLPOOL a89d795ac4c12bf300de19b572d6d626d5432d527148f8590438736b4fff4c8850e1beb80394bb9cd3990ab7bd9138768b1b2f35c9b9f69422be2907cfdbaea0
-MISC ChangeLog 2200 SHA256 15500183e456d918d38ee10be269056d1716777f30d2af25ebe79c194cdf3158 SHA512 fedfdc8ffe40ca6c9521343704c31dbe646a75fe0cc84e2a8fbd5d8aa7c915cd075feaf4a3577054990c659a2a959eeb1393db26db558edf08707daf45c9af2b WHIRLPOOL d3b540200279ffd5ac1ef80528d6efbe2eb4e454c98966bea544d616b6684274107dd978e80f729ef4c6d852f955c7a8b7d456a1180c1a07cf76e69d50296357
+MISC ChangeLog 2200 SHA256 4d2a46e3b4f6985b5d64047420bb49a7b3bb7aff55d5e7240fc2ad442efaaa88 SHA512 74b858353af4e0d9d06b056c3c8aeba38bf089aa15a9ad5b8e7c50e00625380f4ab556a04b92ce78fe4f01e68618612f8af580a90d76d8a216e8e32b0f4ff106 WHIRLPOOL a5f94edbcb72cfcd0976e5026429ae263d1510f4d826ac88c496eb95da1136d533141c086cd4ff5ee56331d22a0f14182af6fe324d8332da1cb381befb03561c
 MISC metadata.xml 232 SHA256 b47c46d4e7fca734d775e015a144a25f079048297e96acb5e9ea46f41bc8cebf SHA512 49ca8eac296332df2bf730e2eabef6c0281b2d3d76792868fe091366d3eb2aef83dd8ed8df377270c2d8437ddddee0fa03fbe0d7a0692aded6cee1af416cd846 WHIRLPOOL 54aa42b7394c7da49d2fe0e0b697516b19b2749066e2a89ccea7bc0111d5deb67662954056d83c30938ec0c768c8c8135957c775ee8fe2101e9c5b1b10b73b47
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.22 (GNU/Linux)
+Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJTc1yNXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+r+XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirgN0QAIpD9YdzpRwcnCCALDU7CW+x
-r1D8p6g8RY5ppuDzALBfKkIoKeYaIlJUfnWLM6wy94nmRWZQTNZb+fOlD2YSbeW5
-fPWG946UxIa8WXueUoXY8j33QfrfoGEGNs6rUKRoV27BSPKIOemlP3xXUeFRDlLo
-7VQ21xN1hZ+GCHialuhAi7aVVjd0lU2HfqdbKJgUe5ZfdI1uZKWYxxN2tl/jrJU7
-PZZEbxX2HW3jwllzleyd6xBFonME+VZYLJV8JjHyhLsKDVMIihaiai6ukcmb+WFF
-LO8CGxr/9T2PFdNFqvTJuQpx6f+R9up6zYaIp4lFwSitp+h00AX/K5n/GgPork2G
-CIbvodB8PNrxgduAAh5kI7kP1xolBpqRx3ZLT70M5KkkH041D3Na6IkLkLUAjyG3
-IaZpoEUa+1qjdbytp7M+uNcGO5Fp0KWPNNNQVzMnFRrltQD59pBoyaDdCVonzwsW
-Js/fKl3MWJp7QOid6vPfCPLarKtH7Uiwb2arVy7QmlQAPCthKFTNaLAD8MtZgNSB
-IQ3abjHTAVFATAF9OTu0GZPcLSY5UJFz0XtSzucmnpGQaQC1ZNSiTILh19YYtyjU
-/c6JHtZ9+QUbMk5t4cuo3e0C9vhtNQ4OrwaH+aiEvRzj/2NTtAznKhZd3uueal4O
-iRyKohLyIY+fKY7sW84N
-=Xzct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+=tZoi
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/raxml/ChangeLog b/sci-biology/raxml/ChangeLog
index 37c3811e4f18..38585bf2a1d8 100644
--- a/sci-biology/raxml/ChangeLog
+++ b/sci-biology/raxml/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/raxml
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.11 2015/03/29 16:03:43 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.12 2015/04/07 14:34:43 jlec Exp $
 
   29 Mar 2015; Justin Lecher <jlec@gentoo.org> raxml-7.2.6.ebuild:
   Use REQUIRED_USE to constrain sse3 compatibility
@@ -21,7 +21,7 @@
 
   27 Jun 2011; Justin Lecher <jlec@gentoo.org> +raxml-7.2.6.ebuild,
   +files/raxml-7.2.6-makefile.patch, metadata.xml:
-  Version BUmp, 312897
+  Version Bump, 312897
 
 *raxml-7.2.5-r1 (21 Jun 2011)
 
diff --git a/sci-biology/raxml/Manifest b/sci-biology/raxml/Manifest
index 016e4bb815f4..63dcd7f48e32 100644
--- a/sci-biology/raxml/Manifest
+++ b/sci-biology/raxml/Manifest
@@ -5,24 +5,24 @@ AUX raxml-7.2.5-makefile.patch 1420 SHA256 f3c9d9eaacf7a7e0d1594e3d689f938ff82c2
 AUX raxml-7.2.6-makefile.patch 777 SHA256 0e87b5cd6375669e660ef6e3c37e51e751ea8846de6c52060f484380c28610d5 SHA512 0cc326e8fed0882c56193fef9d1c98577f2252acc4dc25e650e0806d89ded0e2911e6967272a6d101cf830cfe63a190a8f5220fd7573864f5fa60106069ad74f WHIRLPOOL 896bb8f27d458e1d555ffb462abf89f55c487e595a604b3446c579a2e95719cfdfb1911873ca2570a73c3299ef49f0c489ee0c127fcb6e1acdcf907c748459b0
 DIST RAxML-7.2.6.tar.bz2 202803 SHA256 d45bcbe45e3ed5f8d6ba3c99b9da9b202c72a9fb196a9d32d2961ee4cb791868 SHA512 b0027a7e583e6471a774d9e784a0be1ff63b3824a8cfbebca68bf9e414adab297206ea2d43c9b97456e6acc0a6a15f55ca33983381dd6150f9e7ea71ddecdcd3 WHIRLPOOL 7fe7ac66412c979d3ecca17e2c06a32566fefe7bdcf39664a0885fcdebc2b8187c222ca5e29cf2685085fba21a8aff0a2aefceec08823cab155a5f62f8b59490
 EBUILD raxml-7.2.6.ebuild 1071 SHA256 67e759359cde54ad06f2bd6c0a5f35b0c0f2e725600d8cb85624e5c985647779 SHA512 0e1c4da2a20d6e2517e7192198ec5f92e1c306b7dc7d3e764a024c3e143f1cafc0e644b23e856a7716977a695068b9f1a9aa681f1101594b27730d98d5a984af WHIRLPOOL eee33988f1e2999e6a77c0318e2635cd604cdce347a47380e5d5dfc4cfb3f596c5ce703a08dc5772e48dc76d7db04705f9a001844387ebcfa52910bda5e004c7
-MISC ChangeLog 1843 SHA256 2ec70b5d4538f389badbaafbbf6e5559164c6be15ced5f0214f9456f45f0517f SHA512 6c6e4e9d5c44f60a2ec10944268b2659f722a215acc63a1cc4875ec4f0d49e127a5054f6dc10a8382a800c43d2ebc6e3d930e3793620bd055ae049d722869984 WHIRLPOOL 30a5a7128142db85ba9afbfaa6c9054ed26157f197acfe63236e43e3a87a7a245a629581923a66c699c533746503519c25cda00c82a903f1e1960582912b8121
+MISC ChangeLog 1843 SHA256 8e1b22930f67ae96d7d4600fcd18797548ef8fe68ac0b4a652691878517897dc SHA512 40d0f7f536b7d7fb6395fdfd443f2e960b42923145d281c5198f3dd86f3fe5afb4eb85f044be8c3222e1728ff691cb34a2684fd7b3c78f36dec0056ded4c5797 WHIRLPOOL dab6051c307797ea0d57bd74d468ef98630070c8c2b51c221437cbf568c8018abc1b567d72fc27c22c7496e8a6e419c9edd5fef7af5009374619fa5068f6c875
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVGCJkXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+sEXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVir0sYP/RLxrm0vtYRs48VWzwF0RRYe
-KVQKcOeM9LcXplgmv1SuHyZhwiHxnGXRWGKAX4FUsyvhMUGy4gdg7Nt+25mt8Vw6
-LGE0k5c99PpcJxwBMffnxB7iJLwoTcx8yfzNeeOGWKjPtwkL5fQNle+MaLJxTZ+t
-8YsYCjBp/fXKAUpTOKXn0PZu8chnHqvXgHE1ysUL2w67dcXd5r340/baslbzvJbE
-WPZCzIXDw32RfolNtJoJpRlo6n4iiJqAQgqvsPUpUjGp6roMj0MymZTedxUlD9aU
-G/JuU3vX87ak5c6cDbyJcOQV4icIFwfEEOFvF5AgEi6NgP+FBug8pkKfFdB0l8iM
-ERn+KZnxMjiaP8DcPmeZIEXtLQrT0dHnEyUyDe3m+xGcxuqNUv6hwJlWHr1V6H+G
-rOk7/2+OmHuX0DiSWc0oGJyBW2PvXkCd7s8t95BWbzIneJQ9zftr32YY+v9Iyk5Y
-btbJneJU5NYNad2DKCcdDTK8sdibHx8mbgWl7CAXWST6kea76jhjLbCAKYvk2TUT
-B5+wG38jFnO3qI/epB45+SIHHjTjfvZJwfo7QiuPQFapeCL3QgsL5A3SSITnA4qy
-gxTLZg/ugYBs0hYZ3yFMjgZYDbVwqBZ36u3o9cPq5viZC20VGGnujTQYgp/+lDUw
-yQl7b8Z7tVfIIo0zBGBz
-=fnoZ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+=C+96
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 82257e446117..b60728a131f6 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.149 2015/04/03 17:25:25 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.150 2015/04/07 14:34:52 jlec Exp $
 
 *rebase-1504 (03 Apr 2015)
 
@@ -47,7 +47,7 @@
   04 Jan 2015; Justin Lecher <jlec@gentoo.org> -rebase-1403.ebuild,
   -rebase-1406.ebuild, -rebase-1408.ebuild, -rebase-1409.ebuild,
   -rebase-1410.ebuild, +rebase-1501.ebuild:
-  Version BUmp; Drop old
+  Version Bump; Drop old
 
   31 Dec 2014; Agostino Sarubbo <ago@gentoo.org> rebase-1411.ebuild:
   Stable for ppc, wrt bug #531422
@@ -80,7 +80,7 @@
 *rebase-1410 (30 Sep 2014)
 
   30 Sep 2014; Justin Lecher <jlec@gentoo.org> +rebase-1410.ebuild:
-  Version BUmp
+  Version Bump
 
   15 Sep 2014; Justin Lecher <jlec@gentoo.org> -rebase-1111.ebuild:
   Drop ebuild with deprecated EAPI
@@ -108,14 +108,14 @@
 
   04 Jun 2014; Justin Lecher <jlec@gentoo.org> -rebase-1404.ebuild,
   +rebase-1406.ebuild:
-  Version BUmp, fixes broken snapshot, #512286
+  Version Bump, fixes broken snapshot, #512286
 
 *rebase-1404 (02 Jun 2014)
 
   02 Jun 2014; Justin Lecher <jlec@gentoo.org> -rebase-1202.ebuild,
   -rebase-1303.ebuild, -rebase-1310.ebuild, -rebase-1311.ebuild,
   -rebase-1312.ebuild, +rebase-1404.ebuild:
-  Version BUmp; clean old
+  Version Bump; clean old
 
 *rebase-1403 (06 Mar 2014)
 
@@ -133,7 +133,7 @@
 *rebase-1311 (02 Nov 2013)
 
   02 Nov 2013; Justin Lecher <jlec@gentoo.org> +rebase-1311.ebuild:
-  Version BUmp
+  Version Bump
 
 *rebase-1310 (08 Oct 2013)
 
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 5f85ee61ce47..d434526da5b1 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -7,24 +7,24 @@ DIST rebase-1504.tar.xz 69726880 SHA256 70b02c6f4f51b091c31685cc6df5a0442f5fde25
 EBUILD rebase-1502.ebuild 1201 SHA256 8254315ccf45f1d719edb055da9df005af439593655af0843e038b98816e6825 SHA512 8491d03cb395e4c8732b193dbf6bb3fb47cab25c5e234b8725d5c7c0f6ca41874d55aa9d35c6231d85ddb94cf00fe72654665e0161f92a09dc1c8588dc1b0d71 WHIRLPOOL e6075024c7606001da1ebfb4f481740e7fe921a5274f1f9ca94889b66045a4503c465ffa7333bdd4333fb762aaaee15ffd4accd18bd28d1a41bc5869dc0c4889
 EBUILD rebase-1503.ebuild 1205 SHA256 4d342e674eeca2d57d45961809e267859f9b3f22ce997ac42aff9cd278469e2a SHA512 40ee04680fa34bd2ee6ad217c3a8fa6152780829b7a0b21d3a8b9c3b70e1f9f0377cf1bb018f01a7103eafc08e40270c50f147627e59e490ad1ff124fcf8c142 WHIRLPOOL 7055a6dcf3d00350f32dadb0a4543b1bfeab74e7f22557f40099314599533cdf76fd1bc9ffcaefac3d92b3ef9818254b5d5ffc17ed1886e1cef9304fd4204939
 EBUILD rebase-1504.ebuild 1205 SHA256 cb576c293a83a1dff42ec70702a72987a32daa28cb2a1219362121942950b9b8 SHA512 7a5feb4d674ca766c42cfed17552428d5647863cbe69fecc830198521cafdef037ce245c0d12163dff297d451cd0eff0979971a6177e5b9e467c40d6f1ff1406 WHIRLPOOL 3aec57502d2f9c68442265165151a20ae772b8f1bb050d418d0efbfd8816c5ba24d554ee29da3db87b10c6a38c5323474ad114e0e3e7935aec6f32f460280ec4
-MISC ChangeLog 19019 SHA256 b55cca7078cdff62656f9268643d9522c76b0e95eabce37d14993c1d50f9260e SHA512 75098825390bdd92d2758488dd82726f3d0837b58d1c2c527d7f16786d9ab25a416b9453328cb54f29569c49604a7393a36135c0bdb9de24686312dea43d3117 WHIRLPOOL 9c8db70ad449231da1ccead904494ebb8624ca505e67dd41f46c05bbb111b116744f325fd834b0e37457c446deea9cba861af6bd1354e1086fa7b96ee35c5cba
+MISC ChangeLog 19019 SHA256 dcca52c9231434a3942451a15bea2a5825b2524f40a0ac0daa8e9b978dad9ee3 SHA512 0fc83bd469c0f809d4ee3ab6b00e2748006fea1fb1da460c10909e00ab3236f25a9acc990fbc65da6628a7dbb509e951b1dc60f95735756076be6df37d974657 WHIRLPOOL 217e591424f193564f5b6b840595fab6036d290d22767afa0706936dfa2abcae3b8936e754e797b1a31fe87f7ffd683d02915d548417af6b044d20b616101f85
 MISC metadata.xml 813 SHA256 392179fd31cd6876ae2e2501faa8b0733704f03d0414c3668fee1f74a8462e56 SHA512 cfbd842c417a0384b17428cf36d866acbac2f89fa1496f45a908cf0d885879b2318fd21a173dc0a8ddae81c00d1c5a5646296473e199ced9028daeb004bea42a WHIRLPOOL 21c9d1a421d157ae6848a6fd99996566a3b51309e246a4aee531b0abab88698a5323d35a22430d9a21f5803402beac917f5cd295f23651f3889304bbeb65d015
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVHs0JXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+sNXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVir1WYP/08TgMyyOX0NROCr4q5w3CR+
-NwlGb7q6S2aTNbpdvekYIZIzl4LJZY2771ngXojB4L1d6eDu+rrW+CYQC32Px9Xi
-s32rerfo+2jLLzwFAXYTsTsmvlQQiGcv6WfHwf9hJTcrHEzGL3dVt3BzG5i7KQJ0
-302CGvflYe3EFpLrIe5syAdzJDuPN3Pwwjh6veRxN2DtTrejauiSfUpNEDwVffR3
-MGLQ4O644FURhsggzacP1I3YlD4npaR1HbXKQuNGEM8PTO/M/TPKT8QUliUfFWDD
-Z5JBpY0hn4uFxJOuGVAyRkL/C9T3WlbFF9QSO3CNCU3c4VVm3hD5cmdo63p+PbdY
-4PPgzanQvzcFaIqbd7oj4lUNdyuutwMnUdcOq9/YdMOe9spBHuQCYn9pEHlI6gfX
-i+fNaonLteBTEe+gfAgr2F0qoDeQ+x3/+8GCQkOqgXKLarv9pru10zYzfHMfeRrC
-0cLP2keYEqIdodUcP4UV6MDFN/1w8y6ipqlDWsF+Q5DwaH+jvu8ehh99ly8ALYcP
-W7tPx4Wx68V/9hwi0794AyQKLaGsNnaVa4WEkT4/a9ZGmjinHIz8NYtetvdGC5dx
-nep6WoMdwuAjExOYwF4+AP0VVRSyN+6eh91IvCvedK2IQh8KXC7LwtKt2aVsg8GN
-kQGw+2zC+20NvEMFW+TQ
-=egpZ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+=X5Nj
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/repeatmasker-libraries/ChangeLog b/sci-biology/repeatmasker-libraries/ChangeLog
index ab1b4b393302..899409c0ef87 100644
--- a/sci-biology/repeatmasker-libraries/ChangeLog
+++ b/sci-biology/repeatmasker-libraries/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/repeatmasker-libraries
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker-libraries/ChangeLog,v 1.5 2013/03/11 16:55:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker-libraries/ChangeLog,v 1.6 2015/04/07 14:35:04 jlec Exp $
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -11,7 +11,7 @@
   -repeatmasker-libraries-20090120.ebuild,
   -repeatmasker-libraries-20090604.ebuild,
   +repeatmasker-libraries-20120418.ebuild, metadata.xml:
-  Version BUmp; cleaned old; fix license
+  Version Bump; cleaned old; fix license
 
 *repeatmasker-libraries-20090604 (20 Aug 2009)
 
diff --git a/sci-biology/repeatmasker-libraries/Manifest b/sci-biology/repeatmasker-libraries/Manifest
index de6eb89dbddc..88f667d2da00 100644
--- a/sci-biology/repeatmasker-libraries/Manifest
+++ b/sci-biology/repeatmasker-libraries/Manifest
@@ -1,14 +1,26 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 DIST repeatmaskerlibraries-20120418.tar.gz 28059668 SHA256 7bd44a70ee33ef60ab829b4cb84a2a82a6fa923e2992071f374b7a473e4dac62 SHA512 254d47faeee72ee62e6854ebc389578691d66e99d9d5e2a0c2462bf752ac5b4d2171c9e6b45d4f87f548a96b62753bb9c37c2d2c00e06544e91dd09fe2bbfe32 WHIRLPOOL 1da932f84c591221c61177116d734d00c36c52d588bcdab73ed63e8128b9c90a63f855bf4e8e603167e059f98465460b5b2e7e00e4a724bec230d27b1b32a31a
 EBUILD repeatmasker-libraries-20120418.ebuild 906 SHA256 014742ff7061d93a0be6daed1e539f5498e6bff0b90463ca98f1dc154df41057 SHA512 ad839b19bdafb785a0ec3da56b18edd8f6f155c87727fb4486ba93236df37a55e4a9559414ee8957ccb2796a2f7f9cef2fdbd2f0e54c33e819bb400e685a7468 WHIRLPOOL 0a2556242f798cad9a6680f76901be84ba2b1ab520d0b8ddb8c98cae131cf23bbb39a7b3e7959bd40aa4854c50c450f60491de80776a5f8bbe05982c2cbde651
-MISC ChangeLog 1565 SHA256 28c13a880f9b2536bac670a8e95e8a0c58119e6887afd0a4449e478ee6e13d86 SHA512 64eddec6b1610a12ede00c5d811d65856e50de637f27091750cd4e8f775c76d916a311c7f1fa845fb728500e9a9187b5ab84da5f78b3972a660b30f65a641bda WHIRLPOOL 1e05ba5c095669d1942c84f3f78e1b3c194822a0e64adaa60a3527cfa5c4768ec12db745da8aa235424e234a6dbde12782ce0bd69c548731eac3b6ddbc5365a8
+MISC ChangeLog 1565 SHA256 15344cdd31c1b4e3b5046eb9b571678951a16ab6f0db183423458ca250ca1c93 SHA512 6727327c9698d7cd7ef9ea3dc047603112e94fe0b0108226108c4ff4aa2b09e573ff80eb44d2f4897b69fce4dca008e59e8e04bd2164a4cbbf55292471ba1608 WHIRLPOOL e4fe66878655ac8601f03c9c9cf7b60ef643e4ba50b19618013a8b57782d5b71ba518ec953c6e2edd57858fcdce13f2d2d2215f43f40a159f73d9bc2f8cc674d
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.19 (GNU/Linux)
+Version: GnuPG v2.0
 
-iEYEAREIAAYFAlE+DH4ACgkQgAnW8HDreRa9DgCgz5Q8LPrVsOuufmFy+maCXzU8
-rqAAnicoDa+VVPOAktgG0gQmGsXACLbI
-=TMEk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+=rEyj
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/repeatmasker/ChangeLog b/sci-biology/repeatmasker/ChangeLog
index 9c670140de83..e3f3b44aa7f6 100644
--- a/sci-biology/repeatmasker/ChangeLog
+++ b/sci-biology/repeatmasker/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/repeatmasker
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/ChangeLog,v 1.7 2013/03/11 16:55:09 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/ChangeLog,v 1.8 2015/04/07 14:34:58 jlec Exp $
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -10,7 +10,7 @@
   07 Mar 2013; Justin Lecher <jlec@gentoo.org> -repeatmasker-3.2.7.ebuild,
   -repeatmasker-3.2.8.ebuild, -repeatmasker-3.2.9.ebuild,
   +repeatmasker-4.0.1.ebuild, metadata.xml:
-  Version BUmp; cleaned old
+  Version Bump; cleaned old
 
 *repeatmasker-3.2.9 (03 Feb 2011)
 
diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest
index 7bef8b395bcc..9d1f26d8faf8 100644
--- a/sci-biology/repeatmasker/Manifest
+++ b/sci-biology/repeatmasker/Manifest
@@ -1,14 +1,26 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 DIST RepeatMasker-open-4-0-1.tar.gz 84077910 SHA256 638ed02d970052ecb7dac6c71d2cb9625b0a0713df88d46ae78865aa4fd3fc92 SHA512 6b710a02b2964bca6acb25cc918bd56f7caba7b80b3b683972f0584180bf0fd3704f657d7ee341187a4ac86d9883e62eb4f09da237fa8ef1b481137d1a89963e WHIRLPOOL f2d67ea6e97a0667ac9ce89f8ed8c590b911d9cd4fc4482bdc48c0ea7ca07161a8bec267ed3e2a950f6d8c501f992ceadc62e1211a80b6bc1c90d293cbf45e77
 EBUILD repeatmasker-4.0.1.ebuild 1652 SHA256 1a901a3e599eb5651fd95045c2e2674b2aba70db365b0fbc1910789e23978fbf SHA512 6ae68d0d0e82770981bbdc45dc4f296732f18fa2b5306f76a4726042c52b79571ebca64088938f2b205e474bf4c9ee3dd0b7a01e753595dc1385d90ef38b98e7 WHIRLPOOL e4e6619f777f94573349664555eed35706f5138db569928176d6dfdbad90fc32274ae76926033da8af56f614857562e27527147484a1108d216f479b5d5283af
-MISC ChangeLog 1664 SHA256 926e6602792109bbdfaf6500cd2ebb76e6f5f1f8dc9228282779bbb87b238513 SHA512 c15a61185b30aa4b67b09008b76eacdf38316069cca2d20df3bcabd01f67d08fa3c5cc3566b7dfbebb3fdbe609aa55d2ae48d1f48d62461a5bb024161cf5d5dd WHIRLPOOL cc41e01d13180c792bef5a8638113ce6af71cb44aeb3e16829cf7b825235e534ebaa21a7fd6d92735d504179e87f44ed7301fda3d2c4ba0a1790e5a0693c9d8d
+MISC ChangeLog 1664 SHA256 34f3c51d3517b7dc7cb6482ca766bd2b1cf6f1037b24ccba8fe19f07219e0f60 SHA512 583ea65bfc2ac3b5016af35025b298fbc0a526585beaa5c33730459429b760af13afb3e72313c1902cd00f60f41be3f545dadf1c6a5d38da41bdb23d6096a68e WHIRLPOOL a60e3053b51f4eb83178fbb4b4c494771fa429317296c8d755b8182e22624108fff3a221fc8ee99965d6bd8df8366b0819d7886ea0c3aa3eb5c8138556d6d705
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.19 (GNU/Linux)
+Version: GnuPG v2.0
 
-iEYEAREIAAYFAlE+DG8ACgkQgAnW8HDreRbupQCgruLbXzVGaAzFzJqW03VLhFY6
-GakAoLqhU6/xhZMDDCY3Dnq240d30btI
-=LEkj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+=phx1
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/samtools/ChangeLog b/sci-biology/samtools/ChangeLog
index f9a84b0644c6..8b4dc264f4b7 100644
--- a/sci-biology/samtools/ChangeLog
+++ b/sci-biology/samtools/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/samtools
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.23 2015/02/28 10:51:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.24 2015/04/07 14:35:10 jlec Exp $
 
   28 Feb 2015; Justin Lecher <jlec@gentoo.org>
   files/samtools-1.2-buildsystem.patch, samtools-1.2.ebuild:
@@ -17,7 +17,7 @@
 
   06 Jan 2015; Justin Lecher <jlec@gentoo.org> +samtools-1.1.ebuild,
   +files/samtools-1.1-buildsystem.patch:
-  Version BUmp
+  Version Bump
 
 *samtools-1.0-r1 (25 Sep 2014)
 
@@ -59,7 +59,7 @@
 
   20 Sep 2013; Justin Lecher <jlec@gentoo.org> +samtools-0.1.19.ebuild,
   +files/samtools-0.1.19-buildsystem.patch:
-  Version BUmp, #485450
+  Version Bump, #485450
 
 *samtools-0.1.18-r3 (29 Mar 2013)
 
@@ -97,7 +97,7 @@
 
   30 Apr 2011; Justin Lecher <jlec@gentoo.org> samtools-0.1.12.ebuild,
   samtools-0.1.12a-r1.ebuild, +samtools-0.1.16.ebuild:
-  Version BUmp, #365265
+  Version Bump, #365265
 
 *samtools-0.1.12a-r1 (14 Mar 2011)
 
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest
index e0a28ca43ede..549828bb1a6e 100644
--- a/sci-biology/samtools/Manifest
+++ b/sci-biology/samtools/Manifest
@@ -16,24 +16,24 @@ EBUILD samtools-1.0-r1.ebuild 1554 SHA256 f63e30721951a432240284ce6d451fd1d497ea
 EBUILD samtools-1.0.ebuild 1488 SHA256 f1b8623d24fc3ce95b39ba1f66a334d9a0df1dd8880227fbb50a32cf96c800d5 SHA512 84b937c3b5143a84a8d9c2062e4e3b91b8a4fe5a50be379ce0dfecba19fc1735a90b1f7690762c7a33aede06229ff229e84a3c31a704ae56cb2241be33a88002 WHIRLPOOL ccc11832e93be31003f41fcd6789537f4c1cf16e0972f0d6cfcd6ef0dc4ee18e4d34907c8f5c32a84137f9bcc5bde2f5d7ea3e61d39e837b4bf0f2319930bb11
 EBUILD samtools-1.1.ebuild 1780 SHA256 7939d37f2dfea1a0f190a57bc02374a8787d4e6a21325677b6c175bc42e19561 SHA512 14be9b8002b38f2fe6f7f0c01629ada05539cba20476436f2de691cb8a73f8751e66045e81dc5aa01cb1fe7d2971cb660e6cc66c9191eba71bc3d87741b3a7b5 WHIRLPOOL 63e66aa4a04932f3cb5269d45d2d746ad712a9302dd1efb0c4a39cdaaf44e6c93a088429ad1b86533928897ed5f12a81a72a1d011123baacf29049850e109de1
 EBUILD samtools-1.2.ebuild 1804 SHA256 1edae996713074dea4dba5f3fe1b981fd1f5a46c9faaca5aad77403458840949 SHA512 0e7967658953f4650740c66cbc3ce4ca3505ed5a4f0ecfda4da9eb6d2d440c9ce1058b4d4d421dba33af3902fadfe86cb90b2f2691d4c5b5ed29e97721eb6a2d WHIRLPOOL 95b8965d68f7bb89f49c13599d35c9e688209106a89aff113198270ebb141f9ee12806f37fc52ee37a73f1710715a891cfd24a06b6f9ebe8f0bf637d70aeaf82
-MISC ChangeLog 4471 SHA256 2665574c4f043d36975b745cbe63095a5ba73528b86b3ff13cd7db95c3e00fc4 SHA512 de09df0b969743f21d961f752973b59733bd0d1a3f117317e9391b1f2c3227b3b94bbc611cba27e3a8c74ab01b2d82fb04d3c761d17993a66bcc61e60568998d WHIRLPOOL 82e4635f4041c6b84326cee694dd25d9b5602a30a5d505f509b1175e2e34ac042705f2653fb3a879614302e4e6b2296fced682dfcbd4242237e969425af93b04
+MISC ChangeLog 4471 SHA256 80f7b21410f3a6b38c0c5542ab83bbeb5f33b52fb6fc963044fcbd87c4416c2d SHA512 16408acdfd92dcf7cf00e80c6e3556fce8e3bfe51d6642ffb33b2023196aff1e7b4b090b6c69e13d4a8fdf1619afc4d26afbd83f6e56f96b9da5bc20d7e34ba6 WHIRLPOOL 1f8c1ba568637d4c9865839d00c3f91ded9b207a6fd733360eb6b4b2688eafafc6d9d945b9a1de5ff5bbdfb21f2a2ec1b6c2fc18e6ec0ac38dad0efb5707ae89
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJU8Z3dXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+sfXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirBb4P/iuEEjBh5eLfjifZdn4CwIXI
-44yMpVegGZf04E6i0weZ/eq0vT41NIN1izxF6m2cOSBCNJ6xvngORMRXtTaXaxgr
-cM4NzL/2rmqJ6uOBhPHqMFQmuILgPRnC3An2V3DwWD4K/ag8YU5A+vCLIcGoH/vw
-zw5J3uuo4Mxn2snXHqBuHhKO8XqnafAOKR3MN6STUzxvEBo8Eq3H1EOi1BljvBTw
-7u8sSYvR+U5okm5LcBMvAypTD4KTO0l+ilveVX/NjDjRVnEHsyKtaEOGjXCUREJE
-2ZDmcQQ2B88SHs+Vw2RDz80J+1Xyu8bShl7OteQAWrKmbQl6WFTG7m5199jyJF6F
-OyuiyYXNibdmzTqkWdWkYFD8sSt0Ujr5Qs01HbWjruYOtKog96Ny+fIJU3zYuBPi
-J/T18lVGaL8823MYezyR+mDfPFwJyRXNQzS5kPzxzu3RFuh14MdGFYdHIhPBL+Dz
-fjpMnBB8k1J7211+sSsxerbGOX6ZvttMTt3ovvtQNAo68RBNkSIKva7bvNtDIFal
-S+ZgdHTALoKwegSutqe75E525//A0uAPapCSRfBRFOcPK0XdLCKgXeCUSpbXwB89
-RIojCB60LFf+U2l9ipxE12kEidDWIu9dwDRaX9+BltgKw1mCZ37WZDBH2pUQCbX+
-bvUhLVKvrzJ4uuISG4Jc
-=lVIr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+=MkMY
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/seqan/ChangeLog b/sci-biology/seqan/ChangeLog
index deae422eb74f..e4ed58118433 100644
--- a/sci-biology/seqan/ChangeLog
+++ b/sci-biology/seqan/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/seqan
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/ChangeLog,v 1.9 2015/02/24 16:47:47 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/ChangeLog,v 1.10 2015/04/07 14:35:17 jlec Exp $
 
 *seqan-2.0.0 (24 Feb 2015)
 
@@ -21,7 +21,7 @@
 
   17 Oct 2014; Justin Lecher <jlec@gentoo.org> +seqan-1.4.2.ebuild,
   +files/seqan-1.4.2-include.patch, +files/seqan-1.4.2-shared.patch:
-  Version BUmp
+  Version Bump
 
   17 Jul 2013; Justin Lecher <jlec@gentoo.org> seqan-1.3.1-r1.ebuild:
   Add missing dep
diff --git a/sci-biology/seqan/Manifest b/sci-biology/seqan/Manifest
index 08c0310656cc..70c9464de8bc 100644
--- a/sci-biology/seqan/Manifest
+++ b/sci-biology/seqan/Manifest
@@ -10,24 +10,24 @@ DIST seqan-src-2.0.0.tar.gz 115731415 SHA256 69cb39574e63de2f728715255ac7ffd26db
 EBUILD seqan-1.3.1-r1.ebuild 979 SHA256 9feff642a58a7beec934130f8bfd0fa39ea614c22883bf7c832b6904d0f62b4b SHA512 cbf66445a3a3d862b8eb15c4bea8d3890c7a62f5aa6f295180d7899a2e7e9221fab726ac2e666faff78cb1fbf26d974505f1e41295aad80d247243d1a9b72114 WHIRLPOOL 0d303318d83105d64c22179b665a7235a3dcbf9ef8ef3362cdfcfdb32d74d011f5b751977d4f45a298ac0f79263f19385261a3649f9bab23b7e0e8cee5e7c729
 EBUILD seqan-1.4.2.ebuild 1571 SHA256 3652a444818dc4d11998d0b728773e2b8d3a2057dfccdaa3db9e992fbbb92369 SHA512 d9abb95d890bc225af5dbf6bcc4c595f7639e389c0bf33bdd668037840eaef786ab56976bd5095e533960edac1dc13136ec8aae4a8d8f81c3612c0f1ebc54104 WHIRLPOOL f1be53239ab0267b0e6119185c1ce9bc5e9ed7ac4cecffbc3802e05d581478eb4e8177204b4e426e837ffe1513e80f8bb5ecfb43f8d6ee9d98059553d7934c7c
 EBUILD seqan-2.0.0.ebuild 1095 SHA256 1beadc530dabab02caa914f68cbea65fd836f3b31166c1877897488c1b20c058 SHA512 ddba4a6b9cc879f7c5d00282f2a996c83c60ec4512028aec7fb14ac548f345be6db8c1f2b52977080e552380629d2bd30511d444a4631acf3c9a46857abfc1b5 WHIRLPOOL 3109df9ae7495b45991f6bed460169438ba210a5cddffbbe1e69ddc4a2bc67de838e8b35e33b71fc2f1b20b448e49549694c66c6f48865fe08de4ffb629c6e25
-MISC ChangeLog 1401 SHA256 da38d2697f38a1e8f33c8396fa08e53725c73543c5adabbf1ff8b96505b4ea18 SHA512 6e2f090bf47b64aaaf97b6add5fecf48ea09a3cbe00637068e2e93ccf3202317d2a6dfb95ecb84591ee276bef58be4718e476486e90b247ac6557e4a7e333117 WHIRLPOOL c9ae8dd9b3d82fc7ff36c3c4c59209d205b7912a55ff9205f0efd832b741246f0018acc89b8b3b79182a0e63ee80c4cd56a1cd59c57caacf494e1a266f139c25
+MISC ChangeLog 1402 SHA256 e5353efc3bd03a8a76deaefe4f443ac4a9703d22ef2bc3e3d1128b3f2122ef44 SHA512 46eed3e83ce34e04b0f5e6dc0abcc4f324b213a21c873d7bd0bd2071c66e09e63dfdb5ba1f0400fe20d0607e7491269b5bb997ce775e62c70fd0241c0886f814 WHIRLPOOL 5f58d73d8ec926408ae2e856fcd6c59fb71f253be15a7def96a2367a431a99ef1b3c1e9ee20aeb121b9e44708650b1257dc28fd8f083aeb7f1211d7220e02209
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJU7Ks0XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+smXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirjmQQAIGbMabDzKSssv4CfxPueUNM
-tO70WdR+s5+D8z6KZTbxL+Fvwx0e8efiBYXBIoQJLpJwL0nve7RTJe7o9v8Ui4R+
-GkVg+aBQED2Nh0zr3KL92V859cIuKSvOMe+YHIx01AnVbKgBEvKnpIxqIIDGW1rc
-xaRF18UFrK+ty3QanZNCAmlNkLPuadqzwMq+1GCqK4Fp1xmKsaTywxDoGnBGTNbC
-Wt7NxCE0eUzWoX8KNxyp0GBqZUdVpQKn+rLkTvZPmWceaat1aL6os1/chuxcEeY7
-rezFpi9x/oNzOjKtOqkJ2OvW3h/8nykTTXmSYzNNrVsJaFhDOjD2W6xncVWzB/CH
-tsB+rh8kGvnGQ7xBkQMpeme0zjk/sRLb6hIyOXujiNP/cQGrD3BI8gXQx6Z0pvP1
-8mEHSQ4t8brxva+KUQ0+6J9QFt9k3i9M26+fEST0qEGsHx/m/zm2KURD+6eyErYl
-bO4iaLCF8/xIyg6F/BQvWrWuBu+VgVX3nCVbK7Cxy45h6RB+ZYvzdzSXJO2genwP
-EduLPLFJNpJtjTLvT7x81PgeySW/bJCrDoYw+o014w2wlrKMEZ2bHdvO8Vgdq0VW
-IPz51Oaanmx96gFLXRaaqcVaaEX4nt/g/Ls1qp0hK3M8N/ymaR94GMZRoa2vLuYn
-eLL7z9KmTig7hw7zqIjd
-=8H1E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+=s6xQ
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/tophat/ChangeLog b/sci-biology/tophat/ChangeLog
index 3f7a5ca73162..a262a0b4cbc3 100644
--- a/sci-biology/tophat/ChangeLog
+++ b/sci-biology/tophat/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/tophat
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/ChangeLog,v 1.13 2014/10/17 08:07:31 pinkbyte Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/ChangeLog,v 1.14 2015/04/07 14:35:24 jlec Exp $
 
   17 Oct 2014; Sergey Popov <pinkbyte@gentoo.org> tophat-1.0.12.ebuild:
   Non-maintainer commit: fix building, approved by Justin Lecher
@@ -25,7 +25,7 @@
 
   19 Jul 2012; Justin Lecher <jlec@gentoo.org> tophat-2.0.0.ebuild,
   +tophat-2.0.2.ebuild, +files/tophat-2.0.2-flags.patch, metadata.xml:
-  Version BUmp; do parallel builds; handle debug build
+  Version Bump; do parallel builds; handle debug build
 
   25 Apr 2012; Justin Lecher <jlec@gentoo.org> tophat-1.0.12.ebuild,
   tophat-1.4.1.ebuild, tophat-2.0.0.ebuild:
diff --git a/sci-biology/tophat/Manifest b/sci-biology/tophat/Manifest
index 68b645a9cb8f..263fdf24d5f1 100644
--- a/sci-biology/tophat/Manifest
+++ b/sci-biology/tophat/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX tophat-2.0.2-flags.patch 4717 SHA256 629bb862c0cf57001622205a0f67540867c0eba33dcd6118e07d4b7ed6ee1603 SHA512 f62047f6c57e30fa1ddd9e985b19b4c7d038f941136ec3ffb3998fe3e595d0d4db478b3530bf47d56bbd213fde3e773cf8dee842eab429543b91267bfba42710 WHIRLPOOL ae15cd1e6ef6eedcc99e84e120e1c92d8bed804aafc9d1ec6f04ba0a4def227e352d51cc6f1e5a8cf6e31b9406e0ce0ee55a6878edf8b7c4068806204989db23
 AUX tophat-2.0.8-flags.patch 4293 SHA256 da67d3186061d70cfb2b3b30073d189f2a3ab9a48fd06787ea895fbd85bf86a3 SHA512 297ba56bce4aaf991ad29bd198f73396e8a49e85ef69384c514e8fdb6afbb7715649f9628f2bcfd22b1618cbd64b5b61b67b596f7c971eea16443a5a90fafc92 WHIRLPOOL 1e162bfbf31588aa1bf25f07e45fae93955530e94f9f24a1a438e30df4303aaf22248946e0d49b29a77ccaf83098aaa81ba6f271179fb7a5fce8861acbf7c493
@@ -16,16 +16,24 @@ EBUILD tophat-2.0.0.ebuild 752 SHA256 83e3db748159b21d7a8368949a2845ec98b44ba2c9
 EBUILD tophat-2.0.2.ebuild 745 SHA256 9310c42a36a69d1fc2cc879cf50864bcc35db2ae2f4a4593b25e1d402b09ab64 SHA512 e7c2ae8c28b04862cdbe692e1d728bb661e52d0bc4f774309729229dbacd467544f2148cdb45aebb51e394c25aae8a587c4dcb188575a0ff2bdef13bb7373eb0 WHIRLPOOL 2396eb1e9e9274d3471b57a4627dee824ffe5386ad8cba7d87be3197d73cc03d044c0dac06fc5ea68654f5d61722a2e960c14e379de3f4a7349147f456c1b6cf
 EBUILD tophat-2.0.8.ebuild 845 SHA256 e80806405eb0e4a9dbb3ce84c08e7f77c3a3fe3ddd1e9a71bca647fa1315e4bf SHA512 530fdd83f6c43e94adc38f5ab78df4e291e06d90fa088715427e03f1bd2480ba68e057333904c84a58cabc0aa251aa45538593f5a9b2402177622abbbc05686e WHIRLPOOL 334a439bf9057459fe7ef342f93b764fe07d1ba3d3268500eaae90643c7cbde27b9ead47b289fa83263c77f6c6999af762f6dbf7c5fe62a2549ffb8f7d1658f5
 EBUILD tophat-2.0.9.ebuild 981 SHA256 9185f5b81a05a1be619566ce0a504cbcb3cdb040d77f0f453efae289e2737d43 SHA512 37be753da3f1539d6726864a507183058a9c4e2fd9989b491f4be3098f65a9883671983440a194a46c1efb022af0b734618109175db4a3c0780329f7937c3b49 WHIRLPOOL 677e473310c7d288e8f3fabf22bec5039eea2f53eff9ff35e3c7f9f7e0b9f817a3697e4864cc95ed05f17f397758bf9353ffa54742dc2a01db2788d69b30dfcc
-MISC ChangeLog 2311 SHA256 ed212288b9bba6915cf2b2dac62df1e6c63fe39ac7f2a5345d69b588be38fb67 SHA512 921263187faf2fdba63ea747c5431320290bf3980e313e34e935dbc9d8764b04186027dae1614f36e36c8e5fd27736dca542410a2919c07bc68df78174f5b139 WHIRLPOOL ae1e75a5aaf5e6ee2fd145e57f5227fa51d852cd6ef145da231a817dc723f5dea2f3dcebf17c5c1366029a518065594731ca60c7325e5eece517e1e47d8e9a63
+MISC ChangeLog 2307 SHA256 66a4e11a7ed49f16ba25f9cedd4fbc273a6a246eb154150276d5b64a642aa9cb SHA512 ed08c5028eb9569860aea71787a5e8d44d9d9d2995f593724371597162e6bec006a4a6d5a7d157facc1f1f6d0003c239ac2de05d1d96ffc58d345e5dfe4b9969 WHIRLPOOL 36e0146907a219cd618af78d36be2f3f60bec0eb187f4ef74f1881f40e049be306a4486fed747a8e78cba0c8d67173ae0175e3d47380abd180467a7c4fb0c4da
 MISC metadata.xml 246 SHA256 0a6f02ccfb3c4276d398c803a9ba1acd5f1d665c27367b3374f37e3f20243038 SHA512 87e71ab4e7f1cadf71fb816efc3dc264f9beea32475d2a53f5084d6c578bf97df767a6ced30650a2436bdbbd535a4cdc298ff2d520e488d539bcd3130a787969 WHIRLPOOL 9f4b764db056117763124b2596be3b125419107243717474ab1cb31ee27f54ad6eb75789fdb9f59ff079c34715df87178566e3ac3ec55d940ae36ea6cfdef2e4
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2
+Version: GnuPG v2.0
 
-iQEcBAEBCAAGBQJUQM5DAAoJECo/aRed9267eMEH/2uyNgGkt1vyleRPTs0oDWSj
-NcpmwZCvyaMD3WE+ahl1ogEfX7mSUOlNhxCCqgfCjVoaTIfUUUpS+HqAKxCAn3zZ
-wsM9G24AfHOss8SRQWcfKk3p1RGKsCV665GRosqcwyiobgQxa3g7PxEK8w2pZXw0
-cmeztEFlD2e6VuQEfG7Dwr025niA2uUHBRXBAJXz/05tyOit00UWifI7Z2uIsHsy
-2pfSmzUK2uM9E/Xac2XkplY92HqFffx9JpEoDGg8HB8cju98jS/TH+ldcYN9oFac
-HWYwaahdT98xvziabDTGYuynIcHuv1sYfkd7e4ATTddamFSp82mKc5KJDcuNC3g=
-=js0Q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+=OOSz
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/trnascan-se/ChangeLog b/sci-biology/trnascan-se/ChangeLog
index c8fc56f8b210..e65627ee8bae 100644
--- a/sci-biology/trnascan-se/ChangeLog
+++ b/sci-biology/trnascan-se/ChangeLog
@@ -1,13 +1,13 @@
 # ChangeLog for sci-biology/trnascan-se
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v 1.14 2015/01/08 07:42:51 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v 1.15 2015/04/07 14:35:30 jlec Exp $
 
 *trnascan-se-1.31 (08 Jan 2015)
 
   08 Jan 2015; Justin Lecher <jlec@gentoo.org> -trnascan-se-1.23-r1.ebuild,
   +trnascan-se-1.31.ebuild, +files/trnascan-se-1.31-ldflags.patch,
   metadata.xml:
-  Version BUmp, #532460
+  Version Bump, #532460
 
   16 Jul 2010; Markos Chandras <hwoarang@gentoo.org>
   trnascan-se-1.23-r2.ebuild:
diff --git a/sci-biology/trnascan-se/Manifest b/sci-biology/trnascan-se/Manifest
index 9108667fc2bf..35e2c4d07fe5 100644
--- a/sci-biology/trnascan-se/Manifest
+++ b/sci-biology/trnascan-se/Manifest
@@ -8,24 +8,24 @@ DIST trnascan-se-1.23.tar.bz2 482202 SHA256 a1d18a0b9decf4a93fa6cf02fb5867367729
 DIST trnascan-se-1.31.tar.gz 740960 SHA256 862924d869453d1c111ba02f47d4cd86c7d6896ff5ec9e975f1858682282f316 SHA512 ba55bc8dfa7e5aee9c9a86c135a55b767cda083b74668bd9af4aaaeb693f9c3a17dc8bade5793de12b775564f09fbb861b0ab4f25bf83ccb0954fecd01bb328d WHIRLPOOL aef8b9f8d44799bac134a36af45374cdaba4b30c041e71e3095252aa8272fe9bd0aa76091211ac270ad609f67f388d577a83ec2ed2433997963fd5708c5b6665
 EBUILD trnascan-se-1.23-r2.ebuild 1365 SHA256 56fc2d08e02e5b3bd17a6fe44e99f7aace3f735fabdc524d4374fffdc1c544e6 SHA512 6a302b65e5e0b68da3f77c9221281874803be0ae685d0cd2f7a22668897c2c8ff0f0498dd156aaa0a3e4f117dd7c92b8c6609a93d7db385353ec2928f8ee3db7 WHIRLPOOL ae4f922cc2dcf53032d7d3ef2a18132e0101352c9f444f96f5307627ff1e9bf5985473cb04f97db1c579a498476d138e1be5776299a6cf6cdf0902c2c4d996a6
 EBUILD trnascan-se-1.31.ebuild 1338 SHA256 56001f593ab84f1ee21b55365df1cdb74f62a96839b5eedc21ff987b5979dfef SHA512 c5526359b37ad5157e7a2eb50bf4c2116454a5f40e6c98207e76755e7e190675fcb75b9ca5e8be15dbfaf221fc9db0b42e309095ec12e29c241a163b5af648c5 WHIRLPOOL b9053ae308f65440db90748b91d7e6ec32ba03998bb42c7d143e78d06d32a7fe80564a6d86c9554bf50c222498457f3edb5b29e257536f8d0106d9f92088566e
-MISC ChangeLog 2136 SHA256 92f300b302a4c13d5d024df078b0a4f53a2792ca01eccb4c53e1dc3d319a6d3b SHA512 05cdb586ff5cb5e426ae35c700ddc03155d073becafc4e8c4ab9f2cb813c4218c0793aac458e450b97971fe4d514daea3c5ebd4ae70400bb93b91494c9837301 WHIRLPOOL d2196cc89a8f0e3cfff5c873c72675990f085ea811d90577086c32bf703dc4b56f8e81a89d44e5ffc6b86b8a32f43209446e12546c2a905df2c6231bbf18f2ba
+MISC ChangeLog 2136 SHA256 c029d5251ef50292b150acebe84c985fc78797e026570389855ec6f5d48243a9 SHA512 5163d5de7b8962b0b744bf632db8cc3614970ae792c04d423f8a016c6757a8583053e05836fabb8dfb7bf2e78cba2d872fa18438689d2bcbbcaaedd9d7009472 WHIRLPOOL 90cc0c3fc4dcecb496558acb97b0e1c5f529c9dc4d1b05a2533991560b4d448927f945226b12f581b39bfbe05b86f068b3430368bfcb384e3384b499091a3b11
 MISC metadata.xml 507 SHA256 8b986960b3adc36724e73343eea980e16e27312095d977191ca79ed46f56643f SHA512 273d9ecc26b4fe5fc73344461dc0073e0cc0ec416d02f4bb3ae124ace494d9dcfecf7e8cfb2e460479712e4ab51e88c66ec467601788f7000ba308989a6aae2c WHIRLPOOL 791bf63e15d5c2ce12817d6ef231156a7b4740d1a9709d9b282cd82115328b913d46307d1a4a974e4e7941a1c2d7c491a286a2a1f259990ab7c9222e2c52476f
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJUrjT8XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ8BAEBCgBmBQJVI+szXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirrY4P/3qqGfiBvkq5Ov6tVOt9N+4l
-ZMM5E4bHupFj0nhDQDmgnHKz2/MXEqUSMpUfvbh0fq74O3jv3pbMaTr3mPUL3c2D
-6F6I5JOw3c9WZGiJhAoRVa9VMAM2+ruQK/ckZ9a+xxkpFvjKxniyQn9W1KcAHpGV
-NHFscW9IucYDj+LCsjYJhXPYpT1fAqXqTyF1oy0EKvFYVeHSkf+8wN7STlPecRjA
-nZOQStx2yZ+shpjo4Xc7t6wLO7gVaWFnin5m5Frb0YeNGXtoJ9TuyStSNMcgXERy
-SSwIVmc90E1T6/p+ROoNZr4aKa0xb+iyBc70CMlAKi94d7+70gheLRR47X1vjZoA
-Uw8BVGqRJgqNG+PfhN5bboLMs+Q/1EAXQDmqTHgxzC75NwgrtRP33JsANtLHA4NP
-HT7hMstHXhlyubVefUYLXvigd77smf1hiDb7GnN5XZl81JpsSb+pI0PAUz3aXlVd
-gNV1WWj9uUZq4zXw0A/ciJL7kfIhIUDT2F2gCWdYgLIvUaSXb/9qBheR7hlJ1UEj
-/5EZPp2lC/pQLFnkrIeVP2O80mIoWSDvRom47Aa3rl9pi/QzH3eJzGWZk9tEWs/L
-MFkfilKZ0BvL+K0dfXtTwXVbg5tXdxpvZyaLhj5qLxB1i1tdKlbauWBKT5/tAFmT
-U5iPqw1jReR7cy6t8YEN
-=s047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+=QE0I
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/vaal/ChangeLog b/sci-biology/vaal/ChangeLog
index 17ab58d7ca1f..eda7ae838582 100644
--- a/sci-biology/vaal/ChangeLog
+++ b/sci-biology/vaal/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/vaal
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.17 2015/03/24 20:21:45 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.18 2015/04/07 14:35:35 jlec Exp $
 
   24 Mar 2015; Justin Lecher <jlec@gentoo.org> -vaal-1.6.ebuild:
   Drop old
@@ -20,7 +20,7 @@
 *vaal-46233 (02 Jun 2013)
 
   02 Jun 2013; Justin Lecher <jlec@gentoo.org> +vaal-46233.ebuild:
-  Version BUmp
+  Version Bump
 
   12 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -29,7 +29,7 @@
 
   20 Feb 2013; Justin Lecher <jlec@gentoo.org> +vaal-45166.ebuild,
   metadata.xml:
-  Version BUmp
+  Version Bump
 
 *vaal-42179 (25 Jun 2012)
 
diff --git a/sci-biology/vaal/Manifest b/sci-biology/vaal/Manifest
index bb3015913d58..0f6f9aad8b20 100644
--- a/sci-biology/vaal/Manifest
+++ b/sci-biology/vaal/Manifest
@@ -9,24 +9,24 @@ AUX vaal-1.6-respect-flags.patch 767 SHA256 f23b40e845727cdc5241cc909ebcd89c2b6d
 DIST VAAL_manual.doc 48128 SHA256 08b662105e8db41b33ea5d6626b58d5a5d793b1dd40fdc663a7068d9abacdc83 SHA512 4da21b6559659764e108c118773bd8ed365b67e3a22de52c7c13429979bb765e7f5d05955ce746a7a55e8d3a6baa752ad575289e71dfd7fb5b8b7207f5cff171 WHIRLPOOL 3a7432974921946e28cd037e47b79fd31631f7a7915a96589a8485b84a3296e1e7d8768e84f4f9086b2648e270f9f84f1e73261bb0b492b3fa7a6cc6fe36f175
 DIST vaal-46233.tar.gz 1148052 SHA256 a1c27ae25583c1333c5169bb33a37cf461bc93b1c18c7e49f585c1cdc9e5a131 SHA512 7a6927d06e1788411063d38e446b7e3c93192e4322a33ea652855f72e550f35debcdb970b895f1fb8504411a54d9096f3dcf506faebd33d50eb033937e15a321 WHIRLPOOL e848bcd6b2dd0c0c52142a3d55acef6a98b816e37355d22386bf3a2fac21e1318a821a394ebd5851cd530aa9afb0d178debc3f74638ee0d0820209a0f432f59f
 EBUILD vaal-46233.ebuild 1038 SHA256 bd5e8a817b0d8ecbbaf4534826c940fb33f2d23cf9696cf0783ad925af5ff839 SHA512 0681b7aa10e6986226610993b99aaab0fcf6b0e5e2c0f955dfd7b6a6313f8d8149866419c4c0d16fae87a986896e60f438aee5ab35de81209e8b037fc0f8e03b WHIRLPOOL 85363e8dd7f2b8f233873b6917f3f719dd91989e2957a852fbf49946a8c5d0f1ad9e76b32ca939bb74890b039386be65769c4ab78f650d2cf19bee98983c81f8
-MISC ChangeLog 2681 SHA256 81c55ecaeb377f4fbdea4ec240493ff053b816f7494c5cec38796e35b491ed4b SHA512 6a74b5ccf8737743ea015583e343457025b6af240aec86279ac560faca236b78ec1da81cbdfdbdf752fc5aedc8eafa3727c4ea32144c364494f02b84fc32fc46 WHIRLPOOL a3ff51240d43bbcd781ddd66a98040fcf117e9ce4a359f1943da0cb667af87da1dfb825af8e36118a6771e0389ce683c4cffaac0d725ba8d3a93351f40ba139a
+MISC ChangeLog 2681 SHA256 3a7d489318b1bf9ba91a9efa3eb116011bf80c84b6c1e28544d3ed556e20490b SHA512 d508d48c7ed2f65219275f70720df978e3874b430b64aaed3833a6aae7821e0d5f3d5c0cc5478033cec30c533e3c6cfddbc1f5da48be797ce927ace0a70ed99d WHIRLPOOL 7e6ff98b96049a0cc09c72eb8a30f577257f26995351c3095dbe9d71f683466efeebde6bfd012b0d7d398e044c9f3187faf29f35f35dbba0624d3cc61cc029b4
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCgBmBQJVEcdeXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
+iQJ7BAEBCgBmBQJVI+s4XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
 ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC
-OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirNvAP/imyfXpQwBJhxvozf//evFUI
-nzvfaauq9Y2C9bNdRtIO8jOwwdv1aZibIRo9PZG81BQ8yVZ74cMnsk/xMp5Pialv
-ErXD4RqsVjw+/5skIXRAXugFhESGFmVevdzrsTTO+01KX/fXw4KHTK4EW62KVLgM
-snbVpYOFjrn3mNXMAfeSL9+FVKJy/BB5g70mhMPYc0kAdHoTCCzBMUFo3n4DmznY
-2WEx+a6Vx73EScCgYMCBW/m7A0HCrr6H9O7QRNvJWvA1eb8/I/Wp9BOd0WEWcv8e
-QedG4bFSoJhyOY0vh/dg2H1RRF2FJKu7tH4sHUCAVi8OaVRFE0mh2W9uqJr6DED+
-KA57STFy+Bb9K67c4sxO5sOTe+TE2yxXIBkdso3velvH3ezP8smHPJ0AID2vI1IU
-O9ra5WZQl9UcqYRzVRX8zHb1q6+GKfXeK0bkRC9baVoRYthtNhRpkAPZiH7si8vy
-1yykP8gZJUojtcAVgpPxvhiqnHPT0IrdfgpdFqgzXGZGPNsv0niDiExvbbp+5pHB
-iBhACNAocE63iF1I0aijPHyZQLoem78EVKpBRv7LuTBaeY5PjWIeHBMHrYcboK7H
-O7BjHdIY6fImhSHL3FSR9Pg5lIsJPjZyiS4yalgY6kNrf6RpQlc+rwZeJYn9yD3w
-bwwBQrcA9wSsRXYo+YgF
-=qRjq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+=y2Zd
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/vcftools/ChangeLog b/sci-biology/vcftools/ChangeLog
index a895db4e0334..85631053c29a 100644
--- a/sci-biology/vcftools/ChangeLog
+++ b/sci-biology/vcftools/ChangeLog
@@ -1,6 +1,6 @@
 # ChangeLog for sci-biology/vcftools
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v 1.8 2015/04/03 19:13:42 dilfridge Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v 1.9 2015/04/07 14:35:41 jlec Exp $
 
   03 Apr 2015; Andreas K. Huettel <dilfridge@gentoo.org>
   -vcftools-0.1.7.ebuild, -vcftools-0.1.8.ebuild,
@@ -24,7 +24,7 @@
 
   19 Jul 2012; Justin Lecher <jlec@gentoo.org> +vcftools-0.1.8.ebuild,
   +files/vcftools-0.1.8-buildsystem.patch:
-  Version BUmp, fix build system
+  Version Bump, fix build system
 
 *vcftools-0.1.7 (02 Jan 2012)
 
diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest
index a4ae65a5fb03..1e2e4522a688 100644
--- a/sci-biology/vcftools/Manifest
+++ b/sci-biology/vcftools/Manifest
@@ -1,27 +1,27 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX vcftools-0.1.12b-buildsystem.patch 1406 SHA256 6c0d478c890b36778d5c7110f212d1e6d838671521e9914e30a0389920b0e354 SHA512 d096d1b73c8b7a6c7dd17afcd965e6811ed67cff2d31fc1b393d6e62437442360202280ab40501d446d4f93773c1f36feb28998eaf8132f0c01408f9a79da42b WHIRLPOOL 4d7bd0aa534890cb0507a7c82e05a0613f0d5c8f89eaa9ae28e89f5afbf433bc8898346da75f67854db7bea059ea1d14bf859558a9a5fa059117eaad35c44a7f
 DIST vcftools_0.1.12b.tar.gz 631374 SHA256 9d2324512e9f1237d5cece74ba63965eb43643e9eada8685afe8217760a20a91 SHA512 803790c8ddbfec1b006a5ce5c6d1c2e0f468978eb96d5ee61d38b863df5752f8b89e0c936803d690491e2d1a898d237ec8772c01b7e9d1a138c610f3a1decbfd WHIRLPOOL 3198f10cd97021f1878b4e2ab1cda3c0038061d301a99a36b1482c8d7bcc5e706f01d0bf3a46634d48dd2e741700032870da2a1dfe7a65022e318d4dde4c8863
 EBUILD vcftools-0.1.12b.ebuild 985 SHA256 8bacd096999eed27ce612b1c7e189a02fc219fd64e9a345dada3d9bc7d30bfd7 SHA512 d8ecf67cda09558848f35b3ad533e83856944d2b712fcf0c3d53385446a6747dd9e50eb043f7b8fe7186087315cd0ea81f0c54a7c43cf1eef3b2d628d78c7268 WHIRLPOOL 1b5343fe25e4763160f8e15cdfb398ccacfa1d90764c6f193cc9b3d21122d4c6862e77ffae3be6bee5f68ade466c6bf2f2e7ede3edbb05ae1996540f6716d470
-MISC ChangeLog 1492 SHA256 29228e125d20a9ea73a303332d7b42f4e0b3affd0b2afc53230aafb9d66cd302 SHA512 c1db60ca1f41cfbc157a56f09cbbe43e92532ceb2795e51fceae53629fb08374b86ad12a4c76142de4b40bcfdf38cfcfd7b771b507c4754626d7c6032bca2f7a WHIRLPOOL 877bd5236ca5dffbaf20e08e2bcc5b75892930a726588e3260f0385b2300d60ddcb6959487bce4431e7f43668b92f5d856d182b44436173458da9883bb049be6
+MISC ChangeLog 1487 SHA256 c87f01e46cefe44f2a84676c7e48130dc2ed8065437bb9a66b47336a9881c976 SHA512 f6bbb15623533764f13192f55fad78dcd41fdbb9eab73d4b089022471e0a001728285677d12a889443b83b370b768f617d84b4ca692105abdcc23ac9cb8e40de WHIRLPOOL e300a50ed4949b7051479e0a0b744b57e5cef5c3bf2c624d05a473c29749c394f1b3f8d9e50370dbb8143eb616fb4c1b9227a48c77aba0b0e68a6fd7d6e7b3d2
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0
 
-iQJ8BAEBCABmBQJVHuZuXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w
-ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQ0RkJDMzI0NjNBOTIwMDY5MTQ2NkMzNDBF
-MTM4NkZEN0VGNEI1Nzc5AAoJEOE4b9fvS1d5+hsQAK6fccFGVZXh9KDC95RyAUdh
-yO/7055xIoGfPrLxksYyasXGmZaW+zDTI84K0AOtvK4DVTp1WJekDTyS28QAAvxT
-rgoEdd+r4k4lyjGsB6O0qF6uvG/WJjywVYUGzYDyWuix3XvuU/GJBVdGpIcgq9QR
-S0em4SDNm3NXTHQtFFuz6PnaPTW2S2BIPI26WFvXCU54D+lLSyW6YqgTgVf5sYxX
-RtmYevN9BvyvHspSJB4neiCEsExTWld3FyOr9uCHUaZBSvyY05b0gjP7p0zJy8yY
-hvpi7mINCGpjOZThOARmWlfxLcywSeV5BE3Qhnr3ktH9bfD3Ly6XgVamyXaBF2Gc
-M3Xe2EqK874OKhXnOpHr35cHZD329/Nckn6SIGSUSAzdJy6SaX0E+xaZiqPsp/vb
-dubuXLchSGZ5+nsTngXYtCfH9O+LhtNlXH4R+/R3Yc5kgdA53fxmutFrz+6BEp40
-YZHWxS5lWRQ9zBDxFj7bNHzFliJYDO5W2BIk+jBRLvYDdPIXx+aiCdHi1dUF0gW8
-kcjuFjo1OFF/gOER7MxWcLbrak1YY0gsgVoaQjebD1RstP4rBHYEHM4g8Q2Txd1N
-jZLsz/B8rc31wOKuTg8dNZGabeOYaJeHw32tjTXL6Uf2Cr7MEoIF97DmCNLQczD5
-hXYAZ9T548H8SRdi5549
-=zB9T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+=xXDH
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/velvet/ChangeLog b/sci-biology/velvet/ChangeLog
index c32155ab5bcb..0315ddd3d363 100644
--- a/sci-biology/velvet/ChangeLog
+++ b/sci-biology/velvet/ChangeLog
@@ -1,11 +1,11 @@
 # ChangeLog for sci-biology/velvet
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.21 2013/12/28 23:19:35 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.22 2015/04/07 14:35:47 jlec Exp $
 
 *velvet-1.2.10 (28 Dec 2013)
 
   28 Dec 2013; Justin Lecher <jlec@gentoo.org> +velvet-1.2.10.ebuild:
-  Import Version BUmp from sci overlay, thanks mahn for the ebuild, #495094
+  Import Version Bump from sci overlay, thanks mahn for the ebuild, #495094
 
   12 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/velvet/Manifest b/sci-biology/velvet/Manifest
index 78fd89756ab6..a5424f7b2b60 100644
--- a/sci-biology/velvet/Manifest
+++ b/sci-biology/velvet/Manifest
@@ -7,22 +7,24 @@ DIST velvet_1.0.18.tgz 7598196 SHA256 e6e108ef16f6c5974617b195ce79c7d2860d335a51
 DIST velvet_1.2.10.tgz 18818559 SHA256 884dd488c2d12f1f89cdc530a266af5d3106965f21ab9149e8cb5c633c977640 SHA512 a6f3e35cebceb22cc10e83088b8cd9758492da78866237cae63d8826d6f5cfb44d82dd8bfcb1185d37cd434d4c7a0f2ac7135bb80a51db86e754afd6156ea874 WHIRLPOOL 595e40c92ab5724b3e9a5af11f023307da7c66628b0c96d2ac2c89617e2aaa8a84279252c397f52d4603119d6fcb4995d2bf6e38f7de8c7c9616bde3aefdcd64
 EBUILD velvet-1.0.18-r1.ebuild 1617 SHA256 4c21b5d9e8b7b87b5e31fc6c794b9e4a5976bdc708597f8754a96cc63f79da16 SHA512 f92127496ccb3c5e0f676149307d0d06e35ce386908a60033a4ce3a1d3a819bf2def9ad5cf4fe8687fe22fc3c89a5896658c94b7b9d06072c4c5a1b48839d8e2 WHIRLPOOL 2cc7afd8a428c62c083fc0f9c4f35c85edd62c7ee150a3f8c82289a27a027be123e2131823c8f23f0af37b7a9fe7f3b05073f7589eff99d5f06c7dcd25829218
 EBUILD velvet-1.2.10.ebuild 1891 SHA256 11823677176e0502b74e67707183d2d8db92ec96f6a6c8a20f9c93ed5f6558df SHA512 87acf4f35d9e17b2de59161b9988a724c69433d1d7f75018e4de45a21e7b926785c8de0fd278c3e04e609793ec37489255bcff18e535dd85382382c3c2f7e1d6 WHIRLPOOL b319edd78d3e29388a1dea2e637d0b53beebe40d7574501621588e7857ed7f57202ce026faeec867332dc9a324ac0da8b2512395e4f225a633abf8234fa679b8
-MISC ChangeLog 3173 SHA256 92a459663255453fb81a312b39afdb4bf14be7fce6865c24f74aaac03b3625d0 SHA512 fcacdb46103546ddca06d73704107828f7f18d2469abafc8c63e25c6c4ea466c45931cd4f2e11a4fc2ba9a18e8cd5c91f564b13bcf42597ed369b00c389adba1 WHIRLPOOL 82685cd51d29daf47230b7640407e7980bef9d7b0b9e2c61a32390cd708a134a9722f3b096cef029a23b27cf1afa9f3ec59892f9b951dce95fdfb059fbf8ea03
+MISC ChangeLog 3173 SHA256 90e96c969e46e9acf85c203b8cd7ea52a0c14f27d0e1dd60f9bd916dc961e4b9 SHA512 d02612119c5d9ccb76b54cc0dd9067a28751a6aeae4d08eb92cb9a8e24adee3a894d33151a1210e3afe99c3e29f96585a570f6a8c3b7e1258c628cec81cb0590 WHIRLPOOL 216bb10b145083d3eb8cd94ca5c6f982fc797022cdd1ec188725cc030d5cc720569f12d1d27754e5712f8c27ab68e45450035708fea89566426031731b1f4f79
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.22 (GNU/Linux)
+Version: GnuPG v2.0
 
-iQIcBAEBCgAGBQJSv1yLAAoJELnU8jG9FVirfFoP/1JaR8El9yBTSlQwZJ3SkF7W
-ILIZfwurg/mMovePAOilU0BvyknHcNUQOBHtpsluxvO3UUiHLzswmne3mxWRrjKJ
-8m+pEjBuZ72nQyFiH1bZN3li5QxncIa8+0tPPinTrXnlrggSAY850chx36h8InwH
-gJWVO1IL1jqTRB+eTO1FHFOywgCI9ZDjX7kUfvJn9lCNKxvzS3CVtC2Fhd6drAtw
-cOrhktbDQK+h2AXuYl2TtCol7V8mjuI4a7BIDMvcuk6bsjxjRBOa9+/wH5N25Rqo
-7vAS4J7hOplntkvjgg9F7T+yWPczicIrhUcTWHh3OP9bpO+OBs0Hj99HC4LcNgNk
-lyb9Ab3uXjVlMKIUcB72YC7olp2XVkpXwDJgaIBCockqWJs06sbPSuUizkPRoO/A
-YcafIWWg+cXQviFelb9EskF2RBKRbv2S3PNFtrfbHWjv6bTfZCXxZbTM0Mz6A8Vf
-Fx743fE2R1MpOuujGXpfY2/qAQVPAL7E24n+JRCTeW4Li1xvfY5MdPoOO2+43aNL
-oViXGZ6Qo79DKyfA75EcSmrDeB7+X5jpED8kfiJp6FPUgzIdX7emL6dwZXFupJiD
-Gyfgv8JepYkMX/54z0DcoPYEW4FjTHD3OkfGFdNPGuthAXE5iOqzp5JdvqKY8kgk
-xJ2dxojyZKa9NoWy7M8l
-=A/Ys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+=NlI3
 -----END PGP SIGNATURE-----
author	Justin Lecher <jlec@gentoo.org>	2015-04-07 14:35:48 +0000
committer	Justin Lecher <jlec@gentoo.org>	2015-04-07 14:35:48 +0000
commit	87e10f11cd146c5ba7795e3f9f8695e18dd1c2f2 (patch)
tree	12a63d58bb799fedb300d513bd7ffb3494f51c6b /sci-biology
parent	Fix Typo (diff)
download	historical-87e10f11cd146c5ba7795e3f9f8695e18dd1c2f2.tar.gz historical-87e10f11cd146c5ba7795e3f9f8695e18dd1c2f2.tar.bz2 historical-87e10f11cd146c5ba7795e3f9f8695e18dd1c2f2.zip