Mirrored large patches

Package-Manager: portage-2.2.0_alpha30/cvs/Linux x86_64

5 files changed, 18 insertions, 1382 deletions

diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
index d48c7a88c482..d805b171cfa9 100644
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/ncbi-tools++
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.19 2011/05/04 19:06:17 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.20 2011/05/05 13:05:51 jlec Exp $
+
+  05 May 2011; Justin Lecher <jlec@gentoo.org>
+  ncbi-tools++-2010.06.15-r1.ebuild,
+  -files/ncbi-tools++-2010.06.15-asneeded.patch,
+  -files/ncbi-tools++-2010.06.15-asneeded-ng.patch:
+  Mirrored large patches
 
 *ncbi-tools++-2010.06.15-r1 (04 May 2011)
 
diff --git a/sci-biology/ncbi-tools++/Manifest b/sci-biology/ncbi-tools++/Manifest
index 6eb4d61ded0a..74f6e695324f 100644
--- a/sci-biology/ncbi-tools++/Manifest
+++ b/sci-biology/ncbi-tools++/Manifest
@@ -3,18 +3,17 @@ Hash: SHA1
 
 AUX ncbi-tools++-2009.05.15-asneeded.patch 3620 RMD160 393db694f0824b0d47571e3b64250b8398c33e58 SHA1 541f00f4d2170d9bb4721468f1c350dcc92552bb SHA256 71a4b2040417a9bfaa7254b5c6668d09ec69f5836a372f1b2bbc938f41ff7657
 AUX ncbi-tools++-2009.05.15-gcc44.patch 554 RMD160 57a23cbaad59b6011124f684db55f4ac2e4a43ab SHA1 7ed63addba554bf87a347d25ea2d4ea6b6552a1a SHA256 ddc2379ff636851e1bb4fb601930ee926c396819e06812b1ba76da001255d5c6
-AUX ncbi-tools++-2010.06.15-asneeded-ng.patch 26465 RMD160 76646b91c9b437e0b0c323998fa74910d3fb6fac SHA1 4f33cf15fe91213516eff1633131cbd580971c5f SHA256 9e944140479f919eb167992032ad493586f736c30bd788863b4f09355c3cb373
-AUX ncbi-tools++-2010.06.15-asneeded.patch 23787 RMD160 f0441cd06c8b7b6dfa9b99561e243e7628bb85ef SHA1 102a83154c62d21ba3271016a6cc96d04a854d62 SHA256 948955cc9a1781767a43486f9dce2990fe5e16fcd815a9733f24b9e7c020350b
 AUX ncbi-tools++-2010.06.15-gcc46.patch 2304 RMD160 bec40073066b10a3ca95f5a125dccab2110eaaf4 SHA1 ff0675b263ba7f9f5e7abd33544e9b2fc88ff11b SHA256 ef20fbecab4c7223dd52855015b8cceed2599120ee0d99cf1dfbdb347725a199
+DIST ncbi-tools++-2010.06.15-asneeded.patch.xz 4948 RMD160 ee82d427be00e029066126898db44d76bc2cbe0d SHA1 71cef7198fcd52eca16cb76ae7f8abd084cbd437 SHA256 8a39b46e1ef6ddae57151c3ffbb7da952e4cb6eea0f76a4ac74de981d88cb873
 DIST ncbi_cxx--Jun_15_2010.tar.gz 17297248 RMD160 35e2ffbe2f37856eb4368e7e98c48c2721848060 SHA1 43c007fb6b3a72389ca33e884c6abd7ad27dbbd0 SHA256 eb24230a9afe9bcf3c52aa6d5d9545dca04649a2569a1bb832ace54aec9d3c54
-EBUILD ncbi-tools++-2010.06.15-r1.ebuild 1768 RMD160 52571dc6cf6955a26caaeb4ce118e0da4904a96c SHA1 ca31dc75d18a7ec9da6edce72922b51be1b2ef01 SHA256 a9647bc1c0faf5179d3c09b494f8995147571e0522ad0c41bb5834eba900f2a8
+EBUILD ncbi-tools++-2010.06.15-r1.ebuild 1831 RMD160 f65b05e2ae933cf73dad4967fa45433a22e7fa62 SHA1 51902ec024597ed97877ca145e45d7dbc3bdcb09 SHA256 506da00a3f1dffc025c97317aded8e6e71102bb7fdeefbe4b30c6e23f876a009
 EBUILD ncbi-tools++-2010.06.15.ebuild 1653 RMD160 6653b7ca063cd7abaaa2a1ccba6a2fc4a0cae841 SHA1 0f93842404e562a127179db6ab52ea7f84c38801 SHA256 06b52157803e3f3c7c8bc78d875c26828ff94b514d7fe651ff67999b29e24c43
-MISC ChangeLog 3706 RMD160 120bf81a9ce0b5c9716eaa975993414025d703ec SHA1 8d4ea493e8cf4e4f76738b04737ecf9b35ede3b7 SHA256 cab6468b2e532f49d5db2be80c364611a3ddee0f38cee26db4439d6eeb93301e
+MISC ChangeLog 3917 RMD160 7819bb35ecebdf1c0f114ecc11a9b6d0d16e74c4 SHA1 edc308e14c5e232918f20f2564302f96cfd6956d SHA256 66d0382d0fede8906541a3e162ba411faa63482dab4897adf8f2a710f6236e7b
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
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diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-2010.06.15-asneeded-ng.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-2010.06.15-asneeded-ng.patch
deleted file mode 100644
index 15b64bc3f8de..000000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-2010.06.15-asneeded-ng.patch
+++ /dev/null
@@ -1,719 +0,0 @@
- src/algo/align/nw/Makefile.xalgoalignnw.lib        |    2 ++
- src/algo/blast/api/Makefile.xblast.lib             |    2 +-
- src/algo/blast/blastinput/Makefile.blastinput.lib  |    2 +-
- src/algo/winmask/Makefile.xalgowinmask.lib         |    1 +
- src/build-system/configure                         |    4 ++--
- src/build-system/configure.ac                      |    4 ++--
- src/cgi/Makefile.cgi.lib                           |    2 ++
- src/cgi/Makefile.fcgi.lib                          |    2 ++
- src/connect/Makefile.connssl.lib                   |    2 ++
- src/connect/Makefile.xconnect.lib                  |    2 ++
- src/connect/Makefile.xthrserv.lib                  |    3 ++-
- src/connect/Makefile.xxconnect.lib                 |    1 +
- .../services/Makefile.ncbi_xcache_netcache.lib     |    3 ++-
- src/connect/services/Makefile.xconnserv.lib        |    2 +-
- src/connect/test/Makefile.conntest.lib             |    2 ++
- src/corelib/Makefile.test_boost.lib                |    2 ++
- src/corelib/Makefile.test_mt.lib                   |    2 ++
- src/corelib/test/Makefile.pbacktest.lib            |    2 ++
- src/db/bdb/Makefile.bdb.lib                        |    3 +++
- src/db/bdb/Makefile.ncbi_xcache_bdb.lib            |    2 +-
- src/db/sqlite/Makefile.sqlitewrapp.lib             |    3 +++
- src/dbapi/Makefile.dbapi.lib                       |    3 +++
- src/dbapi/driver/Makefile.dbapi_driver.lib         |    1 +
- .../driver/samples/Makefile.dbapi_sample_base.lib  |    2 ++
- .../python/Makefile.python_ncbi_dbapi.lib          |    2 +-
- src/dbapi/simple/Makefile.sdbapi.lib               |    2 ++
- src/html/Makefile.html.lib                         |    1 +
- src/objects/biblio/Makefile.biblio.lib             |    2 ++
- src/objects/blast/Makefile.blast.lib               |    2 ++
- src/objects/blast/Makefile.xnetblastcli.lib        |    2 ++
- src/objects/general/Makefile.general.lib           |    2 ++
- src/objects/medline/Makefile.medline.lib           |    2 ++
- src/objects/omssa/Makefile.omssa.lib               |    2 ++
- src/objects/pub/Makefile.pub.lib                   |    2 ++
- src/objects/scoremat/Makefile.scoremat.lib         |    2 ++
- src/objects/seq/Makefile.seq.lib                   |    2 ++
- src/objects/seqcode/Makefile.seqcode.lib           |    2 ++
- src/objects/submit/Makefile.submit.lib             |    3 +++
- src/objects/valid/Makefile.valid.lib               |    2 ++
- src/objmgr/util/Makefile.util.lib                  |    2 ++
- .../align_format/Makefile.align_format.lib         |    2 ++
- src/objtools/blast/seqdb_reader/Makefile.seqdb.lib |    1 +
- src/objtools/cleanup/Makefile.cleanup.lib          |    2 ++
- .../blastdb/Makefile.ncbi_xloader_blastdb.lib      |    1 +
- .../data_loaders/genbank/Makefile.ncbi_xreader.lib |    2 +-
- src/objtools/readers/Makefile.xobjread.lib         |    3 +--
- src/objtools/readers/Makefile.xobjreadex.lib       |    2 ++
- src/objtools/validator/Makefile.validator.lib      |    2 ++
- src/serial/Makefile.serial.lib                     |    2 ++
- src/serial/soap/Makefile.soap.lib                  |    2 ++
- src/serial/soap/Makefile.soap_server.lib           |    2 ++
- src/serial/test/Makefile.we_cpp.lib                |    2 ++
- src/util/Makefile.util.lib                         |    2 ++
- src/util/compress/api/Makefile.compress.lib        |    2 +-
- src/util/qparse/Makefile.xqueryparse.lib           |    2 ++
- src/util/regexp/Makefile.regexp.lib                |    2 ++
- src/util/sequtil/Makefile.sequtil.lib              |    2 ++
- src/util/xregexp/Makefile.xregexp.lib              |    2 +-
- 58 files changed, 105 insertions(+), 16 deletions(-)
-
-diff --git a/src/algo/align/nw/Makefile.xalgoalignnw.lib b/src/algo/align/nw/Makefile.xalgoalignnw.lib
-index db149c4..25d62b9 100644
---- a/src/algo/align/nw/Makefile.xalgoalignnw.lib
-+++ b/src/algo/align/nw/Makefile.xalgoalignnw.lib
-@@ -17,3 +17,5 @@ LIB = xalgoalignnw
- 
- CXXFLAGS = $(FAST_CXXFLAGS) -D ALGOALIGN_NW_SPLIGN_MAKE_PUBLIC_BINARY
- LDFLAGS  = $(FAST_LDFLAGS)
-+
-+DLL_LIB = xser  xncbi xutil
-diff --git a/src/algo/blast/api/Makefile.xblast.lib b/src/algo/blast/api/Makefile.xblast.lib
-index 68d5ad8..8bf6ab5 100644
---- a/src/algo/blast/api/Makefile.xblast.lib
-+++ b/src/algo/blast/api/Makefile.xblast.lib
-@@ -73,7 +73,7 @@ SRC  = $(SRC_C:%=.core_%) $(SRC_CXX)
- 
- LIB = xblast
- 
--DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS)
-+DLL_LIB = xalgowinmask composition_adjustment xalgoblastdbindex xalgodustmask xobjutil $(OBJMGR_LIBS)
- 
- CFLAGS   = $(FAST_CFLAGS)
- # Strict gcc flags
-diff --git a/src/algo/blast/blastinput/Makefile.blastinput.lib b/src/algo/blast/blastinput/Makefile.blastinput.lib
-index ede2c7b..da2f544 100644
---- a/src/algo/blast/blastinput/Makefile.blastinput.lib
-+++ b/src/algo/blast/blastinput/Makefile.blastinput.lib
-@@ -20,7 +20,7 @@ SRC  = $(SRC_CXX)
- 
- LIB = blastinput
- 
--DLL_LIB = xblast $(OBJMGR_LIBS)
-+DLL_LIB = xblast $(OBJMGR_LIBS) seqdb
- 
- # should be redundant, given the above :-/
- ASN_DEP = seqset xnetblast
-diff --git a/src/algo/winmask/Makefile.xalgowinmask.lib b/src/algo/winmask/Makefile.xalgowinmask.lib
-index 951e656..8297ec7 100644
---- a/src/algo/winmask/Makefile.xalgowinmask.lib
-+++ b/src/algo/winmask/Makefile.xalgowinmask.lib
-@@ -19,3 +19,4 @@ SRC = seq_masker seq_masker_score_mean seq_masker_score_mean_glob \
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS  = $(FAST_LDFLAGS)
- 
-+DLL_LIB = seqmasks_io
-diff --git a/src/build-system/configure b/src/build-system/configure
-index a088db7..d858c86 100755
---- a/src/build-system/configure
-+++ b/src/build-system/configure
-@@ -5054,10 +5054,10 @@ if test -z "$DEF_FAST_FLAGS"  -o  -z "$FAST_CXXFLAGS" ; then
-         DEF_FAST_FLAGS="-O2"
-         ;;
-       GCC:* )
--        DEF_FAST_FLAGS="-O9 -finline-functions -ffast-math -fstrict-aliasing"
-+        DEF_FAST_FLAGS=""
-         if test "$with_profiling" != "yes"; then
-            # incompatible with -pg
--           DEF_FAST_FLAGS="$DEF_FAST_FLAGS -fomit-frame-pointer"
-+           DEF_FAST_FLAGS="$DEF_FAST_FLAGS"
-         fi
-         ;;
-       WorkShop5[89]* | WorkShop510 )
-diff --git a/src/build-system/configure.ac b/src/build-system/configure.ac
-index 7810bc3..5ad6d38 100644
---- a/src/build-system/configure.ac
-+++ b/src/build-system/configure.ac
-@@ -1276,10 +1276,10 @@ if test -z "$DEF_FAST_FLAGS"  -o  -z "$FAST_CXXFLAGS" ; then
-         DEF_FAST_FLAGS="-O2"
-         ;;
-       GCC:* )
--        DEF_FAST_FLAGS="-O9 -finline-functions -ffast-math -fstrict-aliasing"
-+        DEF_FAST_FLAGS=""
-         if test "$with_profiling" != "yes"; then
-            # incompatible with -pg
--           DEF_FAST_FLAGS="$DEF_FAST_FLAGS -fomit-frame-pointer"
-+           DEF_FAST_FLAGS="$DEF_FAST_FLAGS"
-         fi
-         ;;
-       WorkShop5[[89]]* | WorkShop510 )
-diff --git a/src/cgi/Makefile.cgi.lib b/src/cgi/Makefile.cgi.lib
-index a990390..81f4e7e 100644
---- a/src/cgi/Makefile.cgi.lib
-+++ b/src/cgi/Makefile.cgi.lib
-@@ -10,4 +10,6 @@ LIB = xcgi
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
- 
-+DLL_LIB  = xncbi xutil
-+
- WATCHERS = vakatov
-diff --git a/src/cgi/Makefile.fcgi.lib b/src/cgi/Makefile.fcgi.lib
-index 2569b41..42b4196 100644
---- a/src/cgi/Makefile.fcgi.lib
-+++ b/src/cgi/Makefile.fcgi.lib
-@@ -11,4 +11,6 @@ LIB = xfcgi
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE) -DNCBI_XFCGI_EXPORTS
- 
-+DLL_LIB  = xncbi xutil
-+
- WATCHERS = vakatov
-diff --git a/src/connect/Makefile.connssl.lib b/src/connect/Makefile.connssl.lib
-index b400ca2..c252172 100644
---- a/src/connect/Makefile.connssl.lib
-+++ b/src/connect/Makefile.connssl.lib
-@@ -4,6 +4,8 @@ SRC      = ncbi_gnutls
- 
- LIB      = connssl
- 
-+DLL_LIB = connect
-+
- CPPFLAGS = $(GNUTLS_INCLUDE) $(ORIG_CPPFLAGS)
- LIBS     = $(GNUTLS_LIBS) $(ORIG_LIBS)
- 
-diff --git a/src/connect/Makefile.xconnect.lib b/src/connect/Makefile.xconnect.lib
-index 473bb0b..2550dda 100644
---- a/src/connect/Makefile.xconnect.lib
-+++ b/src/connect/Makefile.xconnect.lib
-@@ -11,6 +11,8 @@ include $(srcdir)/Makefile.xxconnect.lib
- SRC  = $(SRC_C) $(SRC_CXX)
- UNIX_SRC = $(LOCAL_LBSM)
- 
-+DLL_LIB = xncbi xutil
-+
- LIB  = xconnect
- PROJ_TAG = core
- 
-diff --git a/src/connect/Makefile.xthrserv.lib b/src/connect/Makefile.xthrserv.lib
-index 23a845b..9d90fd0 100644
---- a/src/connect/Makefile.xthrserv.lib
-+++ b/src/connect/Makefile.xthrserv.lib
-@@ -4,6 +4,7 @@ SRC      = threaded_server server server_monitor connection_pool
- LIB      = xthrserv
- PROJ_TAG = core
- LIBS     = $(NETWORK_LIBS)
--DLL_LIB  = xutil xconnect
-+
-+DLL_LIB  = xncbi xutil xconnect
- 
- WATCHERS = lavr
-diff --git a/src/connect/Makefile.xxconnect.lib b/src/connect/Makefile.xxconnect.lib
-index 382f0b9..c31ace3 100644
---- a/src/connect/Makefile.xxconnect.lib
-+++ b/src/connect/Makefile.xxconnect.lib
-@@ -13,6 +13,7 @@ SRC      = $(SRC_CXX)
- LIB      = xxconnect
- PROJ_TAG = core
- 
-+DLL_LIB = xncbi xutil connect
- LIBS     = $(NETWORK_LIBS) $(ORIG_LIBS)
- 
- WATCHERS = lavr
-diff --git a/src/connect/services/Makefile.ncbi_xcache_netcache.lib b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-index 606f4f1..2911eff 100644
---- a/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-+++ b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-@@ -6,7 +6,8 @@ SRC = neticache_client
- LIB = ncbi_xcache_netcache
- 
- LIB_OR_DLL = both
--DLL_LIB = xconnserv xconnect xutil
-+
-+DLL_LIB = xconnserv xconnect xutil xncbi
- 
- CPPFLAGS = $(ORIG_CPPFLAGS)
- LIBS = $(ORIG_LIBS)
-diff --git a/src/connect/services/Makefile.xconnserv.lib b/src/connect/services/Makefile.xconnserv.lib
-index 8124a0d..de45848 100644
---- a/src/connect/services/Makefile.xconnserv.lib
-+++ b/src/connect/services/Makefile.xconnserv.lib
-@@ -16,6 +16,6 @@ LIB     = xconnserv
- PROJ_TAG = core
- LIBS    = $(NETWORK_LIBS)
- 
--DLL_LIB = xthrserv xconnect xutil
-+DLL_LIB = xthrserv xconnect xutil xncbi
- 
- WATCHERS = kazimird
-diff --git a/src/connect/test/Makefile.conntest.lib b/src/connect/test/Makefile.conntest.lib
-index 08f7bb9..9389e09 100644
---- a/src/connect/test/Makefile.conntest.lib
-+++ b/src/connect/test/Makefile.conntest.lib
-@@ -3,4 +3,6 @@
- SRC = ncbi_conntest
- LIB = xconntest
- 
-+DLL_LIB = xncbi xutil connect
-+
- WATCHERS = lar
-diff --git a/src/corelib/Makefile.test_boost.lib b/src/corelib/Makefile.test_boost.lib
-index b19bc5b..036951a 100644
---- a/src/corelib/Makefile.test_boost.lib
-+++ b/src/corelib/Makefile.test_boost.lib
-@@ -3,6 +3,8 @@
- SRC = test_boost
- LIB = test_boost
- 
-+DLL_LIB = xncbi
-+
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
- 
- REQUIRES = Boost.Test.Included
-diff --git a/src/corelib/Makefile.test_mt.lib b/src/corelib/Makefile.test_mt.lib
-index 90c10d2..d99347b 100644
---- a/src/corelib/Makefile.test_mt.lib
-+++ b/src/corelib/Makefile.test_mt.lib
-@@ -3,6 +3,8 @@
- SRC = test_mt
- LIB    = test_mt
- 
-+DLL_LIB = xncbi
-+
- # REQUIRES = MT
- 
- WATCHERS = grichenk
-diff --git a/src/corelib/test/Makefile.pbacktest.lib b/src/corelib/test/Makefile.pbacktest.lib
-index da0c616..e9aeba7 100644
---- a/src/corelib/test/Makefile.pbacktest.lib
-+++ b/src/corelib/test/Makefile.pbacktest.lib
-@@ -3,4 +3,6 @@
- SRC = pbacktest
- LIB = xpbacktest
- 
-+DLL_LIB = xncbi
-+
- WATCHERS = lavr
-diff --git a/src/db/bdb/Makefile.bdb.lib b/src/db/bdb/Makefile.bdb.lib
-index 3729707..45874cf 100644
---- a/src/db/bdb/Makefile.bdb.lib
-+++ b/src/db/bdb/Makefile.bdb.lib
-@@ -13,4 +13,7 @@ LIB = bdb
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
- 
-+DLL_LIB = xncbi xutil
-+LIBS = $(BERKELEYDB_LIBS)
-+
- WATCHERS = kuznets
-diff --git a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-index 7e97a26..8f54efc 100644
---- a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-+++ b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-@@ -8,7 +8,7 @@ SRC = bdb_blobcache
- LIB = ncbi_xcache_bdb
- 
- LIB_OR_DLL = both
--DLL_LIB = bdb xutil
-+DLL_LIB = bdb xutil xncbi
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
- LIBS = $(BERKELEYDB_LIBS) $(ORIG_LIBS)
-diff --git a/src/db/sqlite/Makefile.sqlitewrapp.lib b/src/db/sqlite/Makefile.sqlitewrapp.lib
-index cecfd16..5d72f9c 100644
---- a/src/db/sqlite/Makefile.sqlitewrapp.lib
-+++ b/src/db/sqlite/Makefile.sqlitewrapp.lib
-@@ -7,4 +7,7 @@ CPPFLAGS= $(ORIG_CPPFLAGS) $(SQLITE3_INCLUDE)
- 
- REQUIRES = SQLITE3
- 
-+DLL_LIB = xncbi xutil
-+LIBS = $(SQLITE3_LIBS)
-+
- WATCHERS = ivanovp
-diff --git a/src/dbapi/Makefile.dbapi.lib b/src/dbapi/Makefile.dbapi.lib
-index 6e3ad4c..d1b5425 100644
---- a/src/dbapi/Makefile.dbapi.lib
-+++ b/src/dbapi/Makefile.dbapi.lib
-@@ -5,7 +5,10 @@ SRC = variant active_obj dbapi driver_mgr err_handler ds_impl conn_impl \
- 	 bytestreambuf blobstream \
- 	 cursor_impl bulkinsert rw_impl
- 
-+#ASN_DEP = dbapi_driver
- LIB    = dbapi
-+DLL_LIB = xncbi xutil
-+LIBS	= $(PYTHON_LIBS)
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
- 
-diff --git a/src/dbapi/driver/Makefile.dbapi_driver.lib b/src/dbapi/driver/Makefile.dbapi_driver.lib
-index dfeac5a..8128559 100644
---- a/src/dbapi/driver/Makefile.dbapi_driver.lib
-+++ b/src/dbapi/driver/Makefile.dbapi_driver.lib
-@@ -15,6 +15,7 @@ LIB_OR_DLL = both
- 
- CPPFLAGS = $(ORIG_CPPFLAGS)
- 
-+DLL_LIB = xncbi xutil
- LIBS = $(DL_LIBS) $(ORIG_LIBS)
- 
- # Work around a mysterious bug in Apple's GCC.
-diff --git a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-index 941ccd6..ef0226f 100644
---- a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-+++ b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-@@ -5,4 +5,6 @@ LIB = dbapi_sample_base
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
- 
-+DLL_LIB = xncbi xutil dbapi_driver
-+
- WATCHERS = ivanovp
-diff --git a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-index ebe08c4..86ecda6 100644
---- a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-+++ b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-@@ -11,7 +11,7 @@ LIB_OR_DLL = dll
- 
- # Dependencies for shared library
- DLL_LIB = dbapi dbapi_driver$(DLL) $(XCONNEXT) xconnect xutil xncbi
--LIBS    = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS)
-+LIBS    = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS) $(PYTHON_LIBS)
- # Drop other flags to build with full dependencies under ICC.
- DLL_LDFLAGS = $(DLL_UNDEF_FLAGS)
- 
-diff --git a/src/dbapi/simple/Makefile.sdbapi.lib b/src/dbapi/simple/Makefile.sdbapi.lib
-index 603fd1e..ccf87c9 100644
---- a/src/dbapi/simple/Makefile.sdbapi.lib
-+++ b/src/dbapi/simple/Makefile.sdbapi.lib
-@@ -3,5 +3,7 @@
- SRC = sdbapi
- LIB = sdbapi
- 
-+DLL_LIB = xncbi xutil dbapi_driver ncbi_xdbapi_ftds xconnect xser bdb xconnserv dbapi
-+
- WATCHERS = ivanovp
- 
-diff --git a/src/html/Makefile.html.lib b/src/html/Makefile.html.lib
-index a57c1e3..dd520a0 100644
---- a/src/html/Makefile.html.lib
-+++ b/src/html/Makefile.html.lib
-@@ -7,4 +7,5 @@ SRC = node html htmlhelper page pager selection components \
-       jsmenu commentdiag indentstream html_exception writer_htmlenc
- LIB = xhtml
- 
-+DLL_LIB = xncbi xutil
- WATCHERS = ivanov
-diff --git a/src/objects/biblio/Makefile.biblio.lib b/src/objects/biblio/Makefile.biblio.lib
-index 275c307..6b5a85b 100644
---- a/src/objects/biblio/Makefile.biblio.lib
-+++ b/src/objects/biblio/Makefile.biblio.lib
-@@ -1,2 +1,4 @@
- LIB = biblio
- SRC = biblio__ biblio___ label_util
-+
-+DLL_LIB = general xser  xncbi xutil
-diff --git a/src/objects/blast/Makefile.blast.lib b/src/objects/blast/Makefile.blast.lib
-index b9d7d38..0fdb87f 100644
---- a/src/objects/blast/Makefile.blast.lib
-+++ b/src/objects/blast/Makefile.blast.lib
-@@ -1,2 +1,4 @@
- LIB = xnetblast
- SRC = blast__ blast___ names
-+
-+DLL_LIB = xncbi xutil xser seq
-diff --git a/src/objects/blast/Makefile.xnetblastcli.lib b/src/objects/blast/Makefile.xnetblastcli.lib
-index 96325c4..20ee95c 100644
---- a/src/objects/blast/Makefile.xnetblastcli.lib
-+++ b/src/objects/blast/Makefile.xnetblastcli.lib
-@@ -2,3 +2,5 @@ ASN_DEP = xnetblast
- 
- LIB = xnetblastcli
- SRC = blastclient blastclient_
-+
-+DLL_LIB  = xncbi xutil seqset connect xconnect
-diff --git a/src/objects/general/Makefile.general.lib b/src/objects/general/Makefile.general.lib
-index 951304f..3be083d 100644
---- a/src/objects/general/Makefile.general.lib
-+++ b/src/objects/general/Makefile.general.lib
-@@ -1,2 +1,4 @@
- LIB = general
- SRC = general__ general___ uoconv
-+
-+DLL_LIB = xser  xncbi xutil
-diff --git a/src/objects/medline/Makefile.medline.lib b/src/objects/medline/Makefile.medline.lib
-index ea28066..eb42aa4 100644
---- a/src/objects/medline/Makefile.medline.lib
-+++ b/src/objects/medline/Makefile.medline.lib
-@@ -1,2 +1,4 @@
- LIB = medline
- SRC = medline__ medline___
-+
-+DLL_LIB = general biblio
-diff --git a/src/objects/omssa/Makefile.omssa.lib b/src/objects/omssa/Makefile.omssa.lib
-index b79617f..e1d4a9e 100644
---- a/src/objects/omssa/Makefile.omssa.lib
-+++ b/src/objects/omssa/Makefile.omssa.lib
-@@ -2,3 +2,5 @@ APP_DEP = seq
- 
- LIB = omssa
- SRC = omssa__ omssa___
-+
-+DLL_LIB = seq
-diff --git a/src/objects/pub/Makefile.pub.lib b/src/objects/pub/Makefile.pub.lib
-index 78c12e1..9baa08d 100644
---- a/src/objects/pub/Makefile.pub.lib
-+++ b/src/objects/pub/Makefile.pub.lib
-@@ -1,2 +1,4 @@
- LIB = pub
- SRC = pub__ pub___
-+
-+DLL_LIB = medline biblio
-diff --git a/src/objects/scoremat/Makefile.scoremat.lib b/src/objects/scoremat/Makefile.scoremat.lib
-index 62e01f5..6260041 100644
---- a/src/objects/scoremat/Makefile.scoremat.lib
-+++ b/src/objects/scoremat/Makefile.scoremat.lib
-@@ -1,2 +1,4 @@
- LIB = scoremat
- SRC = scoremat__ scoremat___
-+
-+DLL_LIB = seqset
-diff --git a/src/objects/seq/Makefile.seq.lib b/src/objects/seq/Makefile.seq.lib
-index 5ca2820..3671ee1 100644
---- a/src/objects/seq/Makefile.seq.lib
-+++ b/src/objects/seq/Makefile.seq.lib
-@@ -10,3 +10,5 @@ LIB = seq
- SRC = $(ASN:%=%__) $(ASN:%=%___) seqport_util \
-       seq_id_tree seq_id_handle seq_id_mapper \
-       seq_loc_mapper_base seq_align_mapper_base seqlocinfo
-+
-+DLL_LIB = general seqcode pub sequtil biblio xser xncbi xutil
-diff --git a/src/objects/seqcode/Makefile.seqcode.lib b/src/objects/seqcode/Makefile.seqcode.lib
-index dc9d60e..1fcd293 100644
---- a/src/objects/seqcode/Makefile.seqcode.lib
-+++ b/src/objects/seqcode/Makefile.seqcode.lib
-@@ -1,2 +1,4 @@
- LIB = seqcode
- SRC = seqcode__ seqcode___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/submit/Makefile.submit.lib b/src/objects/submit/Makefile.submit.lib
-index 74798f8..388a187 100644
---- a/src/objects/submit/Makefile.submit.lib
-+++ b/src/objects/submit/Makefile.submit.lib
-@@ -1,2 +1,5 @@
- LIB = submit
- SRC = submit__ submit___
-+
-+
-+DLL_LIB = xser
-diff --git a/src/objects/valid/Makefile.valid.lib b/src/objects/valid/Makefile.valid.lib
-index 86a00a0..7090d74 100644
---- a/src/objects/valid/Makefile.valid.lib
-+++ b/src/objects/valid/Makefile.valid.lib
-@@ -1,3 +1,5 @@
- # $Id: ncbi-tools++-2010.06.15-asneeded-ng.patch,v 1.1 2011/05/04 19:06:17 jlec Exp $
- LIB = valid
- SRC = valid__ valid___
-+
-+DLL_LIB = xregexp
-diff --git a/src/objmgr/util/Makefile.util.lib b/src/objmgr/util/Makefile.util.lib
-index 90eeee0..5977767 100644
---- a/src/objmgr/util/Makefile.util.lib
-+++ b/src/objmgr/util/Makefile.util.lib
-@@ -8,5 +8,7 @@ ASN_DEP = submit
- SRC = weight sequence feature seqtitle create_defline obj_sniff seq_loc_util seq_align_util
- LIB = xobjutil
- 
-+DLL_LIB = xobjmgr
-+
- WATCHERS = ucko vasilche
- 
-diff --git a/src/objtools/align_format/Makefile.align_format.lib b/src/objtools/align_format/Makefile.align_format.lib
-index fe0c16d..c4535ea 100644
---- a/src/objtools/align_format/Makefile.align_format.lib
-+++ b/src/objtools/align_format/Makefile.align_format.lib
-@@ -16,3 +16,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
- # CXXFLAGS = $(FAST_CXXFLAGS)
- #
- # LIB_OR_DLL = dll
-+
-+DLL_LIB = seqdb blastdb
-diff --git a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-index 11c7fae..b930bc9 100644
---- a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-+++ b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-@@ -28,3 +28,4 @@ CFLAGS   = $(FAST_CFLAGS)
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS  = $(FAST_LDFLAGS)
- 
-+DLL_LIB = blastdb seq xobjmgr
-diff --git a/src/objtools/cleanup/Makefile.cleanup.lib b/src/objtools/cleanup/Makefile.cleanup.lib
-index d72e4ee..1b46b41 100644
---- a/src/objtools/cleanup/Makefile.cleanup.lib
-+++ b/src/objtools/cleanup/Makefile.cleanup.lib
-@@ -8,3 +8,5 @@ SRC = cleanup cleanupp cleanup_feat cleanup_general cleanup_pub \
-       cleanup_utils cleanup_biosource cleanup_gbqual cleanup_desc
-       
- LIB = xcleanup
-+
-+DLL_LIB = xobjmgr
-diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-index 22dc6df..868da0f 100644
---- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-+++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-@@ -5,3 +5,4 @@ SRC = bdbloader cached_sequence local_blastdb_adapter
- 
- ASN_DEP = blastdb seqset
- 
-+DLL_LIB = seqdb
-diff --git a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-index b938560..07bddd8 100644
---- a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-+++ b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-@@ -12,4 +12,4 @@ LIB = ncbi_xreader
- LIB_OR_DLL = both
- 
- # Dependencies for shared library
--DLL_LIB = 
-+DLL_LIB = xcompress
-diff --git a/src/objtools/readers/Makefile.xobjread.lib b/src/objtools/readers/Makefile.xobjread.lib
-index c5c4789..58b304a 100644
---- a/src/objtools/readers/Makefile.xobjread.lib
-+++ b/src/objtools/readers/Makefile.xobjread.lib
-@@ -8,5 +8,4 @@ SRC = acc_pattern agp_read agp_util aln_reader bed_reader cigar fasta \
- 	  multireader phrap reader_base readfeat rm_reader wiggle_data \
- 	  wiggle_reader
- 
--DLL_LIB = creaders
--
-+DLL_LIB = creaders xncbi seq biblio seqset
-diff --git a/src/objtools/readers/Makefile.xobjreadex.lib b/src/objtools/readers/Makefile.xobjreadex.lib
-index 8152069..da01b3a 100644
---- a/src/objtools/readers/Makefile.xobjreadex.lib
-+++ b/src/objtools/readers/Makefile.xobjreadex.lib
-@@ -5,3 +5,5 @@ ASN_DEP = seq seqset
- LIB = xobjreadex
- SRC = glimmer_reader idmapper idmapper_builtin idmapper_config \
- 	  idmapper_database
-+
-+DLL_LIB = xncbi xutil seq xobjmgr
-diff --git a/src/objtools/validator/Makefile.validator.lib b/src/objtools/validator/Makefile.validator.lib
-index bc8ae31..b16b11e 100644
---- a/src/objtools/validator/Makefile.validator.lib
-+++ b/src/objtools/validator/Makefile.validator.lib
-@@ -9,3 +9,5 @@ SRC = validator validatorp valid_biosource valid_pub validerror_align validerror
- LIB = xvalidate
- 
- ASN_DEP = general biblio pub seq seqset submit taxon3 valerr valid
-+
-+DLL_LIB = general biblio pub seq seqset submit taxon3 valerr valid xobjmgr xalnmgr
-diff --git a/src/serial/Makefile.serial.lib b/src/serial/Makefile.serial.lib
-index 2563b5f..d2e23b9 100644
---- a/src/serial/Makefile.serial.lib
-+++ b/src/serial/Makefile.serial.lib
-@@ -18,4 +18,6 @@ SRC = \
- 
- LIB    = xser
- 
-+DLL_LIB = xncbi xutil
-+
- WATCHERS = gouriano
-diff --git a/src/serial/soap/Makefile.soap.lib b/src/serial/soap/Makefile.soap.lib
-index e77d4ee..936798a 100644
---- a/src/serial/soap/Makefile.soap.lib
-+++ b/src/serial/soap/Makefile.soap.lib
-@@ -7,4 +7,6 @@ SRC = soap_message soap_readhook soap_writehook soap_client \
-       soap_11__ soap_11___
- LIB = xsoap
- 
-+DLL_LIB = xncbi xutil xser xconnect
-+
- WATCHERS = gouriano
-diff --git a/src/serial/soap/Makefile.soap_server.lib b/src/serial/soap/Makefile.soap_server.lib
-index c961496..4892f55 100644
---- a/src/serial/soap/Makefile.soap_server.lib
-+++ b/src/serial/soap/Makefile.soap_server.lib
-@@ -8,4 +8,6 @@ LIB = xsoap_server
- 
- REQUIRES = cgi
- 
-+DLL_LIB = xncbi xutil xcgi xsoap xser
-+
- WATCHERS = gouriano
-diff --git a/src/serial/test/Makefile.we_cpp.lib b/src/serial/test/Makefile.we_cpp.lib
-index 9877691..1c7250b 100644
---- a/src/serial/test/Makefile.we_cpp.lib
-+++ b/src/serial/test/Makefile.we_cpp.lib
-@@ -1,5 +1,7 @@
- LIB = we_cpp
- SRC = we_cpp__ we_cpp___
- 
-+DLL_LIB = xncbi xutil xser
-+
- WATCHERS = gouriano
- 
-diff --git a/src/util/Makefile.util.lib b/src/util/Makefile.util.lib
-index f103ff1..98d2cd0 100644
---- a/src/util/Makefile.util.lib
-+++ b/src/util/Makefile.util.lib
-@@ -11,6 +11,8 @@ SRC = random_gen utf8 checksum bytesrc strbuffer itree smalldns \
- LIB = xutil
- PROJ_TAG = core
- 
-+DLL_LIB = xncbi
-+
- LIBS = $(ORIG_LIBS)
- 
- WATCHERS = vakatov
-diff --git a/src/util/compress/api/Makefile.compress.lib b/src/util/compress/api/Makefile.compress.lib
-index f27e8fb..18b0634 100644
---- a/src/util/compress/api/Makefile.compress.lib
-+++ b/src/util/compress/api/Makefile.compress.lib
-@@ -6,7 +6,7 @@ LIB = xcompress
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
- 
--DLL_LIB =  $(BZ2_LIB)  $(Z_LIB)  $(LZO_LIB)
-+DLL_LIB =  $(BZ2_LIB)  $(Z_LIB)  $(LZO_LIB) xutil xncbi
- LIBS    =  $(BZ2_LIBS) $(Z_LIBS) $(LZO_LIBS)
- 
- WATCHERS = ivanov
-diff --git a/src/util/qparse/Makefile.xqueryparse.lib b/src/util/qparse/Makefile.xqueryparse.lib
-index a003930..0f59ec0 100644
---- a/src/util/qparse/Makefile.xqueryparse.lib
-+++ b/src/util/qparse/Makefile.xqueryparse.lib
-@@ -6,4 +6,6 @@ SRC = query_parse parser query_tree_print query_exec
- query_parser_bison.tab.c : query_parser_bison.y
- 	bison -v -p ncbi_q_ -o query_parser_bison.tab.c query_parser_bison.y
- 
-+DLL_LIB = xncbi xutil
-+
- WATCHERS = kuznets
-diff --git a/src/util/regexp/Makefile.regexp.lib b/src/util/regexp/Makefile.regexp.lib
-index 0f8d5e8..04d87d9 100644
---- a/src/util/regexp/Makefile.regexp.lib
-+++ b/src/util/regexp/Makefile.regexp.lib
-@@ -7,6 +7,8 @@ SRC = pcre_chartables pcre_compile pcre_config pcre_dfa_exec pcre_exec pcre_full
- 
- LIB = regexp
- 
-+DLL_LIB = xncbi xutil
-+
- CPPFLAGS = -I$(includedir)/util/regexp -DHAVE_CONFIG_H $(ORIG_CPPFLAGS)
- 
- WATCHERS = ivanov
-diff --git a/src/util/sequtil/Makefile.sequtil.lib b/src/util/sequtil/Makefile.sequtil.lib
-index c068a32..5c89253 100644
---- a/src/util/sequtil/Makefile.sequtil.lib
-+++ b/src/util/sequtil/Makefile.sequtil.lib
-@@ -3,4 +3,6 @@
- LIB = sequtil
- SRC = sequtil sequtil_convert sequtil_convert_imp sequtil_manip sequtil_tables sequtil_shared
- 
-+DLL_LIB = xncbi xutil
-+
- WATCHERS = shomrat
-diff --git a/src/util/xregexp/Makefile.xregexp.lib b/src/util/xregexp/Makefile.xregexp.lib
-index 965fac4..3accea3 100644
---- a/src/util/xregexp/Makefile.xregexp.lib
-+++ b/src/util/xregexp/Makefile.xregexp.lib
-@@ -6,7 +6,7 @@ LIB = xregexp
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
- 
--DLL_LIB = $(PCRE_LIB)
-+DLL_LIB = $(PCRE_LIB) xutil xncbi
- LIBS    = $(PCRE_LIBS)
- 
- WATCHERS = ivanov
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-2010.06.15-asneeded.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-2010.06.15-asneeded.patch
deleted file mode 100644
index 28ff4c6c6edb..000000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-2010.06.15-asneeded.patch
+++ /dev/null
@@ -1,652 +0,0 @@
- src/algo/align/nw/Makefile.xalgoalignnw.lib        |    2 ++
- src/algo/blast/api/Makefile.xblast.lib             |    2 +-
- src/algo/blast/blastinput/Makefile.blastinput.lib  |    2 +-
- src/algo/winmask/Makefile.xalgowinmask.lib         |    1 +
- src/build-system/configure                         |    4 ++--
- src/build-system/configure.ac                      |    4 ++--
- src/cgi/Makefile.cgi.lib                           |    2 ++
- src/cgi/Makefile.fcgi.lib                          |    2 ++
- src/connect/Makefile.connssl.lib                   |    2 ++
- src/connect/Makefile.xconnect.lib                  |    2 ++
- src/connect/Makefile.xthrserv.lib                  |    3 ++-
- src/connect/Makefile.xxconnect.lib                 |    1 +
- .../services/Makefile.ncbi_xcache_netcache.lib     |    3 ++-
- src/connect/services/Makefile.xconnserv.lib        |    2 +-
- src/connect/test/Makefile.conntest.lib             |    2 ++
- src/corelib/Makefile.test_boost.lib                |    2 ++
- src/corelib/Makefile.test_mt.lib                   |    2 ++
- src/corelib/test/Makefile.pbacktest.lib            |    2 ++
- src/db/bdb/Makefile.bdb.lib                        |    3 +++
- src/db/bdb/Makefile.ncbi_xcache_bdb.lib            |    2 +-
- src/db/sqlite/Makefile.sqlitewrapp.lib             |    3 +++
- src/dbapi/Makefile.dbapi.lib                       |    3 +++
- src/dbapi/driver/Makefile.dbapi_driver.lib         |    1 +
- .../driver/samples/Makefile.dbapi_sample_base.lib  |    2 ++
- .../python/Makefile.python_ncbi_dbapi.lib          |    2 +-
- src/dbapi/simple/Makefile.sdbapi.lib               |    2 ++
- src/html/Makefile.html.lib                         |    1 +
- src/objects/biblio/Makefile.biblio.lib             |    2 ++
- src/objects/blast/Makefile.blast.lib               |    2 ++
- src/objects/blast/Makefile.xnetblastcli.lib        |    2 ++
- src/objects/general/Makefile.general.lib           |    2 ++
- src/objects/medline/Makefile.medline.lib           |    2 ++
- src/objects/omssa/Makefile.omssa.lib               |    2 ++
- src/objects/pub/Makefile.pub.lib                   |    2 ++
- src/objects/scoremat/Makefile.scoremat.lib         |    2 ++
- src/objects/seq/Makefile.seq.lib                   |    2 ++
- .../align_format/Makefile.align_format.lib         |    2 ++
- src/objtools/blast/seqdb_reader/Makefile.seqdb.lib |    1 +
- .../blastdb/Makefile.ncbi_xloader_blastdb.lib      |    1 +
- .../data_loaders/genbank/Makefile.ncbi_xreader.lib |    2 +-
- src/objtools/readers/Makefile.xobjread.lib         |    3 +--
- src/objtools/readers/Makefile.xobjreadex.lib       |    2 ++
- src/serial/Makefile.serial.lib                     |    2 ++
- src/serial/soap/Makefile.soap.lib                  |    2 ++
- src/serial/soap/Makefile.soap_server.lib           |    2 ++
- src/serial/test/Makefile.we_cpp.lib                |    2 ++
- src/util/Makefile.util.lib                         |    2 ++
- src/util/compress/api/Makefile.compress.lib        |    2 +-
- src/util/qparse/Makefile.xqueryparse.lib           |    2 ++
- src/util/regexp/Makefile.regexp.lib                |    2 ++
- src/util/sequtil/Makefile.sequtil.lib              |    2 ++
- src/util/xregexp/Makefile.xregexp.lib              |    2 +-
- 52 files changed, 92 insertions(+), 16 deletions(-)
-
-diff --git a/src/algo/align/nw/Makefile.xalgoalignnw.lib b/src/algo/align/nw/Makefile.xalgoalignnw.lib
-index db149c4..25d62b9 100644
---- a/src/algo/align/nw/Makefile.xalgoalignnw.lib
-+++ b/src/algo/align/nw/Makefile.xalgoalignnw.lib
-@@ -17,3 +17,5 @@ LIB = xalgoalignnw
- 
- CXXFLAGS = $(FAST_CXXFLAGS) -D ALGOALIGN_NW_SPLIGN_MAKE_PUBLIC_BINARY
- LDFLAGS  = $(FAST_LDFLAGS)
-+
-+DLL_LIB = xser  xncbi xutil
-diff --git a/src/algo/blast/api/Makefile.xblast.lib b/src/algo/blast/api/Makefile.xblast.lib
-index 68d5ad8..8bf6ab5 100644
---- a/src/algo/blast/api/Makefile.xblast.lib
-+++ b/src/algo/blast/api/Makefile.xblast.lib
-@@ -73,7 +73,7 @@ SRC  = $(SRC_C:%=.core_%) $(SRC_CXX)
- 
- LIB = xblast
- 
--DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS)
-+DLL_LIB = xalgowinmask composition_adjustment xalgoblastdbindex xalgodustmask xobjutil $(OBJMGR_LIBS)
- 
- CFLAGS   = $(FAST_CFLAGS)
- # Strict gcc flags
-diff --git a/src/algo/blast/blastinput/Makefile.blastinput.lib b/src/algo/blast/blastinput/Makefile.blastinput.lib
-index ede2c7b..da2f544 100644
---- a/src/algo/blast/blastinput/Makefile.blastinput.lib
-+++ b/src/algo/blast/blastinput/Makefile.blastinput.lib
-@@ -20,7 +20,7 @@ SRC  = $(SRC_CXX)
- 
- LIB = blastinput
- 
--DLL_LIB = xblast $(OBJMGR_LIBS)
-+DLL_LIB = xblast $(OBJMGR_LIBS) seqdb
- 
- # should be redundant, given the above :-/
- ASN_DEP = seqset xnetblast
-diff --git a/src/algo/winmask/Makefile.xalgowinmask.lib b/src/algo/winmask/Makefile.xalgowinmask.lib
-index 951e656..8297ec7 100644
---- a/src/algo/winmask/Makefile.xalgowinmask.lib
-+++ b/src/algo/winmask/Makefile.xalgowinmask.lib
-@@ -19,3 +19,4 @@ SRC = seq_masker seq_masker_score_mean seq_masker_score_mean_glob \
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS  = $(FAST_LDFLAGS)
- 
-+DLL_LIB = seqmasks_io
-diff --git a/src/build-system/configure b/src/build-system/configure
-index a088db7..d858c86 100755
---- a/src/build-system/configure
-+++ b/src/build-system/configure
-@@ -5054,10 +5054,10 @@ if test -z "$DEF_FAST_FLAGS"  -o  -z "$FAST_CXXFLAGS" ; then
-         DEF_FAST_FLAGS="-O2"
-         ;;
-       GCC:* )
--        DEF_FAST_FLAGS="-O9 -finline-functions -ffast-math -fstrict-aliasing"
-+        DEF_FAST_FLAGS=""
-         if test "$with_profiling" != "yes"; then
-            # incompatible with -pg
--           DEF_FAST_FLAGS="$DEF_FAST_FLAGS -fomit-frame-pointer"
-+           DEF_FAST_FLAGS="$DEF_FAST_FLAGS"
-         fi
-         ;;
-       WorkShop5[89]* | WorkShop510 )
-diff --git a/src/build-system/configure.ac b/src/build-system/configure.ac
-index 7810bc3..5ad6d38 100644
---- a/src/build-system/configure.ac
-+++ b/src/build-system/configure.ac
-@@ -1276,10 +1276,10 @@ if test -z "$DEF_FAST_FLAGS"  -o  -z "$FAST_CXXFLAGS" ; then
-         DEF_FAST_FLAGS="-O2"
-         ;;
-       GCC:* )
--        DEF_FAST_FLAGS="-O9 -finline-functions -ffast-math -fstrict-aliasing"
-+        DEF_FAST_FLAGS=""
-         if test "$with_profiling" != "yes"; then
-            # incompatible with -pg
--           DEF_FAST_FLAGS="$DEF_FAST_FLAGS -fomit-frame-pointer"
-+           DEF_FAST_FLAGS="$DEF_FAST_FLAGS"
-         fi
-         ;;
-       WorkShop5[[89]]* | WorkShop510 )
-diff --git a/src/cgi/Makefile.cgi.lib b/src/cgi/Makefile.cgi.lib
-index a990390..81f4e7e 100644
---- a/src/cgi/Makefile.cgi.lib
-+++ b/src/cgi/Makefile.cgi.lib
-@@ -10,4 +10,6 @@ LIB = xcgi
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
- 
-+DLL_LIB  = xncbi xutil
-+
- WATCHERS = vakatov
-diff --git a/src/cgi/Makefile.fcgi.lib b/src/cgi/Makefile.fcgi.lib
-index 2569b41..42b4196 100644
---- a/src/cgi/Makefile.fcgi.lib
-+++ b/src/cgi/Makefile.fcgi.lib
-@@ -11,4 +11,6 @@ LIB = xfcgi
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE) -DNCBI_XFCGI_EXPORTS
- 
-+DLL_LIB  = xncbi xutil
-+
- WATCHERS = vakatov
-diff --git a/src/connect/Makefile.connssl.lib b/src/connect/Makefile.connssl.lib
-index b400ca2..c252172 100644
---- a/src/connect/Makefile.connssl.lib
-+++ b/src/connect/Makefile.connssl.lib
-@@ -4,6 +4,8 @@ SRC      = ncbi_gnutls
- 
- LIB      = connssl
- 
-+DLL_LIB = connect
-+
- CPPFLAGS = $(GNUTLS_INCLUDE) $(ORIG_CPPFLAGS)
- LIBS     = $(GNUTLS_LIBS) $(ORIG_LIBS)
- 
-diff --git a/src/connect/Makefile.xconnect.lib b/src/connect/Makefile.xconnect.lib
-index 473bb0b..2550dda 100644
---- a/src/connect/Makefile.xconnect.lib
-+++ b/src/connect/Makefile.xconnect.lib
-@@ -11,6 +11,8 @@ include $(srcdir)/Makefile.xxconnect.lib
- SRC  = $(SRC_C) $(SRC_CXX)
- UNIX_SRC = $(LOCAL_LBSM)
- 
-+DLL_LIB = xncbi xutil
-+
- LIB  = xconnect
- PROJ_TAG = core
- 
-diff --git a/src/connect/Makefile.xthrserv.lib b/src/connect/Makefile.xthrserv.lib
-index 23a845b..9d90fd0 100644
---- a/src/connect/Makefile.xthrserv.lib
-+++ b/src/connect/Makefile.xthrserv.lib
-@@ -4,6 +4,7 @@ SRC      = threaded_server server server_monitor connection_pool
- LIB      = xthrserv
- PROJ_TAG = core
- LIBS     = $(NETWORK_LIBS)
--DLL_LIB  = xutil xconnect
-+
-+DLL_LIB  = xncbi xutil xconnect
- 
- WATCHERS = lavr
-diff --git a/src/connect/Makefile.xxconnect.lib b/src/connect/Makefile.xxconnect.lib
-index 382f0b9..c31ace3 100644
---- a/src/connect/Makefile.xxconnect.lib
-+++ b/src/connect/Makefile.xxconnect.lib
-@@ -13,6 +13,7 @@ SRC      = $(SRC_CXX)
- LIB      = xxconnect
- PROJ_TAG = core
- 
-+DLL_LIB = xncbi xutil connect
- LIBS     = $(NETWORK_LIBS) $(ORIG_LIBS)
- 
- WATCHERS = lavr
-diff --git a/src/connect/services/Makefile.ncbi_xcache_netcache.lib b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-index 606f4f1..2911eff 100644
---- a/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-+++ b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-@@ -6,7 +6,8 @@ SRC = neticache_client
- LIB = ncbi_xcache_netcache
- 
- LIB_OR_DLL = both
--DLL_LIB = xconnserv xconnect xutil
-+
-+DLL_LIB = xconnserv xconnect xutil xncbi
- 
- CPPFLAGS = $(ORIG_CPPFLAGS)
- LIBS = $(ORIG_LIBS)
-diff --git a/src/connect/services/Makefile.xconnserv.lib b/src/connect/services/Makefile.xconnserv.lib
-index 8124a0d..de45848 100644
---- a/src/connect/services/Makefile.xconnserv.lib
-+++ b/src/connect/services/Makefile.xconnserv.lib
-@@ -16,6 +16,6 @@ LIB     = xconnserv
- PROJ_TAG = core
- LIBS    = $(NETWORK_LIBS)
- 
--DLL_LIB = xthrserv xconnect xutil
-+DLL_LIB = xthrserv xconnect xutil xncbi
- 
- WATCHERS = kazimird
-diff --git a/src/connect/test/Makefile.conntest.lib b/src/connect/test/Makefile.conntest.lib
-index 08f7bb9..9389e09 100644
---- a/src/connect/test/Makefile.conntest.lib
-+++ b/src/connect/test/Makefile.conntest.lib
-@@ -3,4 +3,6 @@
- SRC = ncbi_conntest
- LIB = xconntest
- 
-+DLL_LIB = xncbi xutil connect
-+
- WATCHERS = lar
-diff --git a/src/corelib/Makefile.test_boost.lib b/src/corelib/Makefile.test_boost.lib
-index b19bc5b..036951a 100644
---- a/src/corelib/Makefile.test_boost.lib
-+++ b/src/corelib/Makefile.test_boost.lib
-@@ -3,6 +3,8 @@
- SRC = test_boost
- LIB = test_boost
- 
-+DLL_LIB = xncbi
-+
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
- 
- REQUIRES = Boost.Test.Included
-diff --git a/src/corelib/Makefile.test_mt.lib b/src/corelib/Makefile.test_mt.lib
-index 90c10d2..d99347b 100644
---- a/src/corelib/Makefile.test_mt.lib
-+++ b/src/corelib/Makefile.test_mt.lib
-@@ -3,6 +3,8 @@
- SRC = test_mt
- LIB    = test_mt
- 
-+DLL_LIB = xncbi
-+
- # REQUIRES = MT
- 
- WATCHERS = grichenk
-diff --git a/src/corelib/test/Makefile.pbacktest.lib b/src/corelib/test/Makefile.pbacktest.lib
-index da0c616..e9aeba7 100644
---- a/src/corelib/test/Makefile.pbacktest.lib
-+++ b/src/corelib/test/Makefile.pbacktest.lib
-@@ -3,4 +3,6 @@
- SRC = pbacktest
- LIB = xpbacktest
- 
-+DLL_LIB = xncbi
-+
- WATCHERS = lavr
-diff --git a/src/db/bdb/Makefile.bdb.lib b/src/db/bdb/Makefile.bdb.lib
-index 3729707..45874cf 100644
---- a/src/db/bdb/Makefile.bdb.lib
-+++ b/src/db/bdb/Makefile.bdb.lib
-@@ -13,4 +13,7 @@ LIB = bdb
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
- 
-+DLL_LIB = xncbi xutil
-+LIBS = $(BERKELEYDB_LIBS)
-+
- WATCHERS = kuznets
-diff --git a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-index 7e97a26..8f54efc 100644
---- a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-+++ b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-@@ -8,7 +8,7 @@ SRC = bdb_blobcache
- LIB = ncbi_xcache_bdb
- 
- LIB_OR_DLL = both
--DLL_LIB = bdb xutil
-+DLL_LIB = bdb xutil xncbi
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
- LIBS = $(BERKELEYDB_LIBS) $(ORIG_LIBS)
-diff --git a/src/db/sqlite/Makefile.sqlitewrapp.lib b/src/db/sqlite/Makefile.sqlitewrapp.lib
-index cecfd16..5d72f9c 100644
---- a/src/db/sqlite/Makefile.sqlitewrapp.lib
-+++ b/src/db/sqlite/Makefile.sqlitewrapp.lib
-@@ -7,4 +7,7 @@ CPPFLAGS= $(ORIG_CPPFLAGS) $(SQLITE3_INCLUDE)
- 
- REQUIRES = SQLITE3
- 
-+DLL_LIB = xncbi xutil
-+LIBS = $(SQLITE3_LIBS)
-+
- WATCHERS = ivanovp
-diff --git a/src/dbapi/Makefile.dbapi.lib b/src/dbapi/Makefile.dbapi.lib
-index 6e3ad4c..d1b5425 100644
---- a/src/dbapi/Makefile.dbapi.lib
-+++ b/src/dbapi/Makefile.dbapi.lib
-@@ -5,7 +5,10 @@ SRC = variant active_obj dbapi driver_mgr err_handler ds_impl conn_impl \
- 	 bytestreambuf blobstream \
- 	 cursor_impl bulkinsert rw_impl
- 
-+#ASN_DEP = dbapi_driver
- LIB    = dbapi
-+DLL_LIB = xncbi xutil
-+LIBS	= $(PYTHON_LIBS)
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
- 
-diff --git a/src/dbapi/driver/Makefile.dbapi_driver.lib b/src/dbapi/driver/Makefile.dbapi_driver.lib
-index dfeac5a..8128559 100644
---- a/src/dbapi/driver/Makefile.dbapi_driver.lib
-+++ b/src/dbapi/driver/Makefile.dbapi_driver.lib
-@@ -15,6 +15,7 @@ LIB_OR_DLL = both
- 
- CPPFLAGS = $(ORIG_CPPFLAGS)
- 
-+DLL_LIB = xncbi xutil
- LIBS = $(DL_LIBS) $(ORIG_LIBS)
- 
- # Work around a mysterious bug in Apple's GCC.
-diff --git a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-index 941ccd6..ef0226f 100644
---- a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-+++ b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-@@ -5,4 +5,6 @@ LIB = dbapi_sample_base
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
- 
-+DLL_LIB = xncbi xutil dbapi_driver
-+
- WATCHERS = ivanovp
-diff --git a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-index ebe08c4..86ecda6 100644
---- a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-+++ b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-@@ -11,7 +11,7 @@ LIB_OR_DLL = dll
- 
- # Dependencies for shared library
- DLL_LIB = dbapi dbapi_driver$(DLL) $(XCONNEXT) xconnect xutil xncbi
--LIBS    = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS)
-+LIBS    = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS) $(PYTHON_LIBS)
- # Drop other flags to build with full dependencies under ICC.
- DLL_LDFLAGS = $(DLL_UNDEF_FLAGS)
- 
-diff --git a/src/dbapi/simple/Makefile.sdbapi.lib b/src/dbapi/simple/Makefile.sdbapi.lib
-index 603fd1e..72d3a5c 100644
---- a/src/dbapi/simple/Makefile.sdbapi.lib
-+++ b/src/dbapi/simple/Makefile.sdbapi.lib
-@@ -3,5 +3,7 @@
- SRC = sdbapi
- LIB = sdbapi
- 
-+DLL_LIB = xncbi xutil dbapi_driver ncbi_xdbapi_ftds xconnect xser bdb xconnserv
-+
- WATCHERS = ivanovp
- 
-diff --git a/src/html/Makefile.html.lib b/src/html/Makefile.html.lib
-index a57c1e3..dd520a0 100644
---- a/src/html/Makefile.html.lib
-+++ b/src/html/Makefile.html.lib
-@@ -7,4 +7,5 @@ SRC = node html htmlhelper page pager selection components \
-       jsmenu commentdiag indentstream html_exception writer_htmlenc
- LIB = xhtml
- 
-+DLL_LIB = xncbi xutil
- WATCHERS = ivanov
-diff --git a/src/objects/biblio/Makefile.biblio.lib b/src/objects/biblio/Makefile.biblio.lib
-index 275c307..6b5a85b 100644
---- a/src/objects/biblio/Makefile.biblio.lib
-+++ b/src/objects/biblio/Makefile.biblio.lib
-@@ -1,2 +1,4 @@
- LIB = biblio
- SRC = biblio__ biblio___ label_util
-+
-+DLL_LIB = general xser  xncbi xutil
-diff --git a/src/objects/blast/Makefile.blast.lib b/src/objects/blast/Makefile.blast.lib
-index b9d7d38..e736a95 100644
---- a/src/objects/blast/Makefile.blast.lib
-+++ b/src/objects/blast/Makefile.blast.lib
-@@ -1,2 +1,4 @@
- LIB = xnetblast
- SRC = blast__ blast___ names
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/objects/blast/Makefile.xnetblastcli.lib b/src/objects/blast/Makefile.xnetblastcli.lib
-index 96325c4..20ee95c 100644
---- a/src/objects/blast/Makefile.xnetblastcli.lib
-+++ b/src/objects/blast/Makefile.xnetblastcli.lib
-@@ -2,3 +2,5 @@ ASN_DEP = xnetblast
- 
- LIB = xnetblastcli
- SRC = blastclient blastclient_
-+
-+DLL_LIB  = xncbi xutil seqset connect xconnect
-diff --git a/src/objects/general/Makefile.general.lib b/src/objects/general/Makefile.general.lib
-index 951304f..3be083d 100644
---- a/src/objects/general/Makefile.general.lib
-+++ b/src/objects/general/Makefile.general.lib
-@@ -1,2 +1,4 @@
- LIB = general
- SRC = general__ general___ uoconv
-+
-+DLL_LIB = xser  xncbi xutil
-diff --git a/src/objects/medline/Makefile.medline.lib b/src/objects/medline/Makefile.medline.lib
-index ea28066..eb42aa4 100644
---- a/src/objects/medline/Makefile.medline.lib
-+++ b/src/objects/medline/Makefile.medline.lib
-@@ -1,2 +1,4 @@
- LIB = medline
- SRC = medline__ medline___
-+
-+DLL_LIB = general biblio
-diff --git a/src/objects/omssa/Makefile.omssa.lib b/src/objects/omssa/Makefile.omssa.lib
-index b79617f..e1d4a9e 100644
---- a/src/objects/omssa/Makefile.omssa.lib
-+++ b/src/objects/omssa/Makefile.omssa.lib
-@@ -2,3 +2,5 @@ APP_DEP = seq
- 
- LIB = omssa
- SRC = omssa__ omssa___
-+
-+DLL_LIB = seq
-diff --git a/src/objects/pub/Makefile.pub.lib b/src/objects/pub/Makefile.pub.lib
-index 78c12e1..9baa08d 100644
---- a/src/objects/pub/Makefile.pub.lib
-+++ b/src/objects/pub/Makefile.pub.lib
-@@ -1,2 +1,4 @@
- LIB = pub
- SRC = pub__ pub___
-+
-+DLL_LIB = medline biblio
-diff --git a/src/objects/scoremat/Makefile.scoremat.lib b/src/objects/scoremat/Makefile.scoremat.lib
-index 62e01f5..6260041 100644
---- a/src/objects/scoremat/Makefile.scoremat.lib
-+++ b/src/objects/scoremat/Makefile.scoremat.lib
-@@ -1,2 +1,4 @@
- LIB = scoremat
- SRC = scoremat__ scoremat___
-+
-+DLL_LIB = seqset
-diff --git a/src/objects/seq/Makefile.seq.lib b/src/objects/seq/Makefile.seq.lib
-index 5ca2820..3671ee1 100644
---- a/src/objects/seq/Makefile.seq.lib
-+++ b/src/objects/seq/Makefile.seq.lib
-@@ -10,3 +10,5 @@ LIB = seq
- SRC = $(ASN:%=%__) $(ASN:%=%___) seqport_util \
-       seq_id_tree seq_id_handle seq_id_mapper \
-       seq_loc_mapper_base seq_align_mapper_base seqlocinfo
-+
-+DLL_LIB = general seqcode pub sequtil biblio xser xncbi xutil
-diff --git a/src/objtools/align_format/Makefile.align_format.lib b/src/objtools/align_format/Makefile.align_format.lib
-index fe0c16d..c4535ea 100644
---- a/src/objtools/align_format/Makefile.align_format.lib
-+++ b/src/objtools/align_format/Makefile.align_format.lib
-@@ -16,3 +16,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
- # CXXFLAGS = $(FAST_CXXFLAGS)
- #
- # LIB_OR_DLL = dll
-+
-+DLL_LIB = seqdb blastdb
-diff --git a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-index 11c7fae..855e0fb 100644
---- a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-+++ b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-@@ -28,3 +28,4 @@ CFLAGS   = $(FAST_CFLAGS)
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS  = $(FAST_LDFLAGS)
- 
-+DLL_LIB = blastdb
-diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-index 22dc6df..868da0f 100644
---- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-+++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-@@ -5,3 +5,4 @@ SRC = bdbloader cached_sequence local_blastdb_adapter
- 
- ASN_DEP = blastdb seqset
- 
-+DLL_LIB = seqdb
-diff --git a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-index b938560..07bddd8 100644
---- a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-+++ b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-@@ -12,4 +12,4 @@ LIB = ncbi_xreader
- LIB_OR_DLL = both
- 
- # Dependencies for shared library
--DLL_LIB = 
-+DLL_LIB = xcompress
-diff --git a/src/objtools/readers/Makefile.xobjread.lib b/src/objtools/readers/Makefile.xobjread.lib
-index c5c4789..58b304a 100644
---- a/src/objtools/readers/Makefile.xobjread.lib
-+++ b/src/objtools/readers/Makefile.xobjread.lib
-@@ -8,5 +8,4 @@ SRC = acc_pattern agp_read agp_util aln_reader bed_reader cigar fasta \
- 	  multireader phrap reader_base readfeat rm_reader wiggle_data \
- 	  wiggle_reader
- 
--DLL_LIB = creaders
--
-+DLL_LIB = creaders xncbi seq biblio seqset
-diff --git a/src/objtools/readers/Makefile.xobjreadex.lib b/src/objtools/readers/Makefile.xobjreadex.lib
-index 8152069..62c1e64 100644
---- a/src/objtools/readers/Makefile.xobjreadex.lib
-+++ b/src/objtools/readers/Makefile.xobjreadex.lib
-@@ -5,3 +5,5 @@ ASN_DEP = seq seqset
- LIB = xobjreadex
- SRC = glimmer_reader idmapper idmapper_builtin idmapper_config \
- 	  idmapper_database
-+
-+DLL_LIB = xncbi xutil seq
-diff --git a/src/serial/Makefile.serial.lib b/src/serial/Makefile.serial.lib
-index 2563b5f..d2e23b9 100644
---- a/src/serial/Makefile.serial.lib
-+++ b/src/serial/Makefile.serial.lib
-@@ -18,4 +18,6 @@ SRC = \
- 
- LIB    = xser
- 
-+DLL_LIB = xncbi xutil
-+
- WATCHERS = gouriano
-diff --git a/src/serial/soap/Makefile.soap.lib b/src/serial/soap/Makefile.soap.lib
-index e77d4ee..936798a 100644
---- a/src/serial/soap/Makefile.soap.lib
-+++ b/src/serial/soap/Makefile.soap.lib
-@@ -7,4 +7,6 @@ SRC = soap_message soap_readhook soap_writehook soap_client \
-       soap_11__ soap_11___
- LIB = xsoap
- 
-+DLL_LIB = xncbi xutil xser xconnect
-+
- WATCHERS = gouriano
-diff --git a/src/serial/soap/Makefile.soap_server.lib b/src/serial/soap/Makefile.soap_server.lib
-index c961496..4892f55 100644
---- a/src/serial/soap/Makefile.soap_server.lib
-+++ b/src/serial/soap/Makefile.soap_server.lib
-@@ -8,4 +8,6 @@ LIB = xsoap_server
- 
- REQUIRES = cgi
- 
-+DLL_LIB = xncbi xutil xcgi xsoap xser
-+
- WATCHERS = gouriano
-diff --git a/src/serial/test/Makefile.we_cpp.lib b/src/serial/test/Makefile.we_cpp.lib
-index 9877691..1c7250b 100644
---- a/src/serial/test/Makefile.we_cpp.lib
-+++ b/src/serial/test/Makefile.we_cpp.lib
-@@ -1,5 +1,7 @@
- LIB = we_cpp
- SRC = we_cpp__ we_cpp___
- 
-+DLL_LIB = xncbi xutil xser
-+
- WATCHERS = gouriano
- 
-diff --git a/src/util/Makefile.util.lib b/src/util/Makefile.util.lib
-index f103ff1..98d2cd0 100644
---- a/src/util/Makefile.util.lib
-+++ b/src/util/Makefile.util.lib
-@@ -11,6 +11,8 @@ SRC = random_gen utf8 checksum bytesrc strbuffer itree smalldns \
- LIB = xutil
- PROJ_TAG = core
- 
-+DLL_LIB = xncbi
-+
- LIBS = $(ORIG_LIBS)
- 
- WATCHERS = vakatov
-diff --git a/src/util/compress/api/Makefile.compress.lib b/src/util/compress/api/Makefile.compress.lib
-index f27e8fb..18b0634 100644
---- a/src/util/compress/api/Makefile.compress.lib
-+++ b/src/util/compress/api/Makefile.compress.lib
-@@ -6,7 +6,7 @@ LIB = xcompress
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
- 
--DLL_LIB =  $(BZ2_LIB)  $(Z_LIB)  $(LZO_LIB)
-+DLL_LIB =  $(BZ2_LIB)  $(Z_LIB)  $(LZO_LIB) xutil xncbi
- LIBS    =  $(BZ2_LIBS) $(Z_LIBS) $(LZO_LIBS)
- 
- WATCHERS = ivanov
-diff --git a/src/util/qparse/Makefile.xqueryparse.lib b/src/util/qparse/Makefile.xqueryparse.lib
-index a003930..0f59ec0 100644
---- a/src/util/qparse/Makefile.xqueryparse.lib
-+++ b/src/util/qparse/Makefile.xqueryparse.lib
-@@ -6,4 +6,6 @@ SRC = query_parse parser query_tree_print query_exec
- query_parser_bison.tab.c : query_parser_bison.y
- 	bison -v -p ncbi_q_ -o query_parser_bison.tab.c query_parser_bison.y
- 
-+DLL_LIB = xncbi xutil
-+
- WATCHERS = kuznets
-diff --git a/src/util/regexp/Makefile.regexp.lib b/src/util/regexp/Makefile.regexp.lib
-index 0f8d5e8..04d87d9 100644
---- a/src/util/regexp/Makefile.regexp.lib
-+++ b/src/util/regexp/Makefile.regexp.lib
-@@ -7,6 +7,8 @@ SRC = pcre_chartables pcre_compile pcre_config pcre_dfa_exec pcre_exec pcre_full
- 
- LIB = regexp
- 
-+DLL_LIB = xncbi xutil
-+
- CPPFLAGS = -I$(includedir)/util/regexp -DHAVE_CONFIG_H $(ORIG_CPPFLAGS)
- 
- WATCHERS = ivanov
-diff --git a/src/util/sequtil/Makefile.sequtil.lib b/src/util/sequtil/Makefile.sequtil.lib
-index c068a32..5c89253 100644
---- a/src/util/sequtil/Makefile.sequtil.lib
-+++ b/src/util/sequtil/Makefile.sequtil.lib
-@@ -3,4 +3,6 @@
- LIB = sequtil
- SRC = sequtil sequtil_convert sequtil_convert_imp sequtil_manip sequtil_tables sequtil_shared
- 
-+DLL_LIB = xncbi xutil
-+
- WATCHERS = shomrat
-diff --git a/src/util/xregexp/Makefile.xregexp.lib b/src/util/xregexp/Makefile.xregexp.lib
-index 965fac4..3accea3 100644
---- a/src/util/xregexp/Makefile.xregexp.lib
-+++ b/src/util/xregexp/Makefile.xregexp.lib
-@@ -6,7 +6,7 @@ LIB = xregexp
- 
- CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
- 
--DLL_LIB = $(PCRE_LIB)
-+DLL_LIB = $(PCRE_LIB) xutil xncbi
- LIBS    = $(PCRE_LIBS)
- 
- WATCHERS = ivanov
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild
index 3968e582aea9..9e3be00d5a52 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild,v 1.1 2011/05/04 19:06:17 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild,v 1.2 2011/05/05 13:05:51 jlec Exp $
 
 EAPI="3"
 
@@ -12,7 +12,9 @@ MY_P="ncbi_cxx--${MY_TAG}"
 
 DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
 HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
-SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz"
+SRC_URI="
+	ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz
+	http://dev.gentoo.org/~jlec/distfiles/${P}-asneeded.patch.xz"
 
 LICENSE="public-domain"
 SLOT="0"
@@ -34,7 +36,7 @@ src_prepare() {
 		src/build-system/configure || die
 	epatch \
 		"${FILESDIR}"/${P}-gcc46.patch \
-		"${FILESDIR}"/${P}-asneeded.patch
+		"${WORKDIR}"/${P}-asneeded.patch
 }
 
 src_configure() {