New ebuild for xdsi

Package-Manager: portage-2.2_rc62/cvs/Linux i686

5 files changed, 115 insertions, 0 deletions

diff --git a/sci-chemistry/xdsi/ChangeLog b/sci-chemistry/xdsi/ChangeLog
new file mode 100644
index 000000000000..75c3d38bd013
--- /dev/null
+++ b/sci-chemistry/xdsi/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/xdsi
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsi/ChangeLog,v 1.1 2010/02/17 11:34:49 jlec Exp $
+
+*xdsi-0.91 (17 Feb 2010)
+
+  17 Feb 2010; Justin Lecher (jlec) <jlec@j-schmitz.net>
+  +files/0.91-gentoo.patch, +xdsi-0.91.ebuild, +metadata.xml:
+  Initial addition
+
diff --git a/sci-chemistry/xdsi/Manifest b/sci-chemistry/xdsi/Manifest
new file mode 100644
index 000000000000..d7e3ab563bdf
--- /dev/null
+++ b/sci-chemistry/xdsi/Manifest
@@ -0,0 +1,15 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX 0.91-gentoo.patch 634 RMD160 bf2c7d7da6049fee4ee415e6a1af6759b03f3ed0 SHA1 01ef2f1e1d335a38017370119648987c8e8c13a8 SHA256 300dd8ae306581adf01f6081ea3fdc68e6864b9e6987d624fb779a91cb615f3c
+DIST xdsi_0.91.tar.gz 682436 RMD160 30331a4197670c39493e1e6849268a1b0aa21705 SHA1 c058abc05bc9e9fa4d3bd497e1ba055fd942c4a5 SHA256 81bb385d2676c597ff0fc764905ec38b2dfa6b81870844159e40520f6e77b5b2
+EBUILD xdsi-0.91.ebuild 1272 RMD160 5934d62466a998dfdb5db2462e08b9835a8a469c SHA1 77cbe3910629e6cca969b19413e0f2adb5de69b8 SHA256 dd622f0fb6705413ace8045239a7b6516abf7ce86550a16123b16e7e729c9716
+MISC ChangeLog 372 RMD160 15f1edd5335e77c8e5c0d1775a9f7b5b2a7e6155 SHA1 45f3a4a2bd8f64d45fc8a118f317dbe7b79fcb8b SHA256 e19d8b905000b4fca5f74f3acffea54bdd84747341abaf6eb823088a061be476
+MISC metadata.xml 978 RMD160 63790119834f78851cbcf92ccd3ca615af95a889 SHA1 35aad499b8658979f0ed26c1c8253fd001e72996 SHA256 fc9c2aa0c9ef8003ee3c95e37c6c68c0b7364d755c70e1a7b6276aa4baa1efcf
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.14 (GNU/Linux)
+
+iEYEARECAAYFAkt71F8ACgkQgAnW8HDreRb3EQCgiBCkFcYEmqa8qTuHU7xemNu8
+8gYAnjq3AL0ru6b92KP73XcUARtZLRMT
+=SmMP
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/xdsi/files/0.91-gentoo.patch b/sci-chemistry/xdsi/files/0.91-gentoo.patch
new file mode 100644
index 000000000000..a21752bf5f68
--- /dev/null
+++ b/sci-chemistry/xdsi/files/0.91-gentoo.patch
@@ -0,0 +1,24 @@
+diff --git a/xdsi b/xdsi
+index 2fcc543..2ce8262 100755
+--- a/xdsi
++++ b/xdsi
+@@ -20,8 +20,8 @@
+ ####################################################################
+ # These are the only two things you may change#
+ 
+-set Templates "/mydir/templates"
+-set initial "/mydir/SLS-2009"
++set Templates "GENTOOTEMPLATE"
++set initial "./"
+ 
+ 
+ ####################################################################
+@@ -122,7 +122,7 @@ return 1
+ }
+ 
+ 
+-CheckExecutables "kpdf gnuplot xds_par xdsstat xdsviewer convert pointless ipmosflm VIEW"
++CheckExecutables "xpdf gnuplot xds_par xdsviewer convert pointless ipmosflm"
+ 
+ wm resizable . 0 0
+ 
diff --git a/sci-chemistry/xdsi/metadata.xml b/sci-chemistry/xdsi/metadata.xml
new file mode 100644
index 000000000000..42fa47ea8165
--- /dev/null
+++ b/sci-chemistry/xdsi/metadata.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+  <email>jlec@gentoo.org</email>
+</maintainer>
+<longdescription>
+XDSi offers you the possibility to process all your datasets in a given directory with minimum effort.
+* You just have to provide it with a resultdirectory and the directory where your frames are stored.
+* All datasets consisting of more than 100 frames within the given directory and all its subdirectories will be processed.
+* For each dataset a space group assignment is done using POINTLESS of the CCP4 software package
+* Plots of the most informative statistics of INTEGRATE.LP, CORRECT.LP and XDSSTAT.LP are generated for each dataset
+* A plot comparing Rmeas, I/sig and Completeness of all the processed datasets is generated
+* You can also generate plots for datasets that have been processed using XDS without XDSi 
+</longdescription>
+</pkgmetadata>
diff --git a/sci-chemistry/xdsi/xdsi-0.91.ebuild b/sci-chemistry/xdsi/xdsi-0.91.ebuild
new file mode 100644
index 000000000000..fdd6d406900c
--- /dev/null
+++ b/sci-chemistry/xdsi/xdsi-0.91.ebuild
@@ -0,0 +1,49 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsi/xdsi-0.91.ebuild,v 1.1 2010/02/17 11:34:49 jlec Exp $
+
+EAPI="3"
+
+inherit eutils
+
+DESCRIPTION="A crude interface for running the XDS"
+HOMEPAGE="http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Xdsi"
+SRC_URI="ftp://turn14.biologie.uni-konstanz.de/pub/${PN}/${PN}_${PV}.tar.gz"
+
+LICENSE="as-is"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+	sci-chemistry/mosflm
+	sci-chemistry/xds-bin[smp]
+	sci-chemistry/pointless
+	sci-visualization/xds-viewer
+	sci-visualization/gnuplot
+	media-gfx/imagemagick
+	app-text/xpdf
+	dev-lang/tk"
+# Need to clarified for licensing
+# sci-chemistry/xdsstat-bin
+DEPEND=""
+
+S="${WORKDIR}"
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PV}-gentoo.patch
+	sed "s:GENTOOTEMPLATE:${EPREFIX}/usr/share/${PN}/templates:g" -i ${PN} \
+	|| die
+}
+
+src_install() {
+	dobin ${PN} || die
+	insinto /usr/share/${PN}/templates
+	doins templates/{*.INP,bohr*,fortran,pauli,info.png,*.pck,tablesf_xdsi} || die
+	dodoc templates/*.pdf || die
+}
+
+pkg_postinst() {
+	elog "Documentation can be found here:"
+	elog "ftp://turn14.biologie.uni-konstanz.de/pub/xdsi/xdsi_doc_print.pdf"
+}