Adding the forgotten pymol-0.99_rc8-data-path.patch.

Package-Manager: portage-2.1.2.2

3 files changed, 77 insertions, 5 deletions

diff --git a/sci-chemistry/pymol/ChangeLog b/sci-chemistry/pymol/ChangeLog
index 4c354a6d8c07..871ad816efa6 100644
--- a/sci-chemistry/pymol/ChangeLog
+++ b/sci-chemistry/pymol/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/pymol
 # Copyright 2002-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.21 2007/05/02 16:52:04 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.22 2007/05/04 15:39:00 je_fro Exp $
+
+  04 May 2007; Jeff Gardner <je_fro@gentoo.org>
+  +files/pymol-0.99_rc8-data-path.patch:
+  Adding the forgotten pymol-0.99_rc8-data-path.patch.
 
 *pymol-0.99_rc8 (02 May 2007)
 
diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest
index ccd0abe6d09f..ba67c683041e 100644
--- a/sci-chemistry/pymol/Manifest
+++ b/sci-chemistry/pymol/Manifest
@@ -10,6 +10,10 @@ AUX pymol-0.99_rc6-data-path.patch 2473 RMD160 76847259270179d6b4196d816da777efb
 MD5 035c32a87c619d2c2cf6c0d7466d92e0 files/pymol-0.99_rc6-data-path.patch 2473
 RMD160 76847259270179d6b4196d816da777efb9f83698 files/pymol-0.99_rc6-data-path.patch 2473
 SHA256 93714e86fc9ce8137b5ff06b4f1e5897740de1ed80d577f6874d95ea65cc142d files/pymol-0.99_rc6-data-path.patch 2473
+AUX pymol-0.99_rc8-data-path.patch 2969 RMD160 608e0e936fccf0860f6b5269e6739c839fcd32ea SHA1 7a3585d14431b7840eff8f6ee0a5d8324049ff77 SHA256 10c97c3d4d2f620a2884a812a6997f2cf8472f2e0c589c2630a4d0bcf67656de
+MD5 ef6d1169828c5bfdab08ddd59bb6dcf6 files/pymol-0.99_rc8-data-path.patch 2969
+RMD160 608e0e936fccf0860f6b5269e6739c839fcd32ea files/pymol-0.99_rc8-data-path.patch 2969
+SHA256 10c97c3d4d2f620a2884a812a6997f2cf8472f2e0c589c2630a4d0bcf67656de files/pymol-0.99_rc8-data-path.patch 2969
 AUX pymol-gentoo.diff 1566 RMD160 6a566cd0105ba94f9b06be8219c5fbe644281ab9 SHA1 8ba5a779fc06158933115fa7cd0048fbad01507f SHA256 15bdd116551022045c57743f21337c14ca368211a68a2a9763a1a7950f9af9d3
 MD5 34d172ef31b5038e071b634d4e645cf1 files/pymol-gentoo.diff 1566
 RMD160 6a566cd0105ba94f9b06be8219c5fbe644281ab9 files/pymol-gentoo.diff 1566
@@ -36,10 +40,10 @@ EBUILD pymol-0.99_rc8.ebuild 2157 RMD160 d8cccc8cb2751c1e79293d5d42a2b4140eab90c
 MD5 332bf0260ab7e634ab206f39d7009cdb pymol-0.99_rc8.ebuild 2157
 RMD160 d8cccc8cb2751c1e79293d5d42a2b4140eab90cc pymol-0.99_rc8.ebuild 2157
 SHA256 cdfca51040a46b536bc9b46f6f859ff243e2cfaff7929e14c50d4e19c0163df9 pymol-0.99_rc8.ebuild 2157
-MISC ChangeLog 6123 RMD160 e9db0d537d7bc920ff659d0f6f25b5cd38f1227c SHA1 ef3af9b8518566bb00e848f4b7e9e4932394dd15 SHA256 c20d6baddd154a34d05ef56f29359501aa65b03fb1d7471df37f6c9eed12fc80
-MD5 bdbe5afa4cc09aad92bfd85560180f14 ChangeLog 6123
-RMD160 e9db0d537d7bc920ff659d0f6f25b5cd38f1227c ChangeLog 6123
-SHA256 c20d6baddd154a34d05ef56f29359501aa65b03fb1d7471df37f6c9eed12fc80 ChangeLog 6123
+MISC ChangeLog 6268 RMD160 887ec642e9e3964e9b99b34f2b4772104db3b5d5 SHA1 89532f3eacfb1badad0344d57bdf8e16e96db488 SHA256 f276e8b27d7d1d9adad05947dd6ae525144bf19e9b5f8c3d2092597cc95c11dd
+MD5 20b79180ebb106d2bda29b2006393871 ChangeLog 6268
+RMD160 887ec642e9e3964e9b99b34f2b4772104db3b5d5 ChangeLog 6268
+SHA256 f276e8b27d7d1d9adad05947dd6ae525144bf19e9b5f8c3d2092597cc95c11dd ChangeLog 6268
 MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
 MD5 43628e9f5743b5c3b018a82669a76bc7 metadata.xml 166
 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 metadata.xml 166
diff --git a/sci-chemistry/pymol/files/pymol-0.99_rc8-data-path.patch b/sci-chemistry/pymol/files/pymol-0.99_rc8-data-path.patch
new file mode 100644
index 000000000000..286489ff8d58
--- /dev/null
+++ b/sci-chemistry/pymol/files/pymol-0.99_rc8-data-path.patch
@@ -0,0 +1,64 @@
+--- pymol-0.99rc8/modules/pymol/commanding.py	2007-04-18 02:11:48.000000000 -0400
++++ commanding.py	2007-04-24 02:17:53.000000000 -0400
+@@ -129,11 +129,11 @@
+                 unlock(0)
+             r = DEFAULT_SUCCESS
+             if show_splash==1: # generic / open-source
+-                png_path = cmd.exp_path("$PYMOL_PATH/data/pymol/splash.png")
++                png_path = cmd.exp_path("$PYMOL_DATA/pymol/splash.png")
+             elif show_splash==2: # evaluation builds
+-                png_path = cmd.exp_path("$PYMOL_PATH/data/pymol/epymol.png")
++                png_path = cmd.exp_path("$PYMOL_DATA/pymol/epymol.png")
+             else: # incentive builds
+-                png_path = cmd.exp_path("$PYMOL_PATH/data/pymol/ipymol.png")
++                png_path = cmd.exp_path("$PYMOL_DATA/pymol/ipymol.png")
+             if os.path.exists(png_path):
+                 cmd.do("_ cmd.load_png('%s',0,quiet=1)"%png_path)
+         else:
+--- pymol-0.99rc8/modules/pymol/fitting.py	2007-04-18 02:11:48.000000000 -0400
++++ fitting.py	2007-04-24 02:18:07.000000000 -0400
+@@ -61,7 +61,7 @@
+         r = DEFAULT_ERROR
+         source = selector.process(source)
+         target = selector.process(target)
+-        mfile = cmd.exp_path("$PYMOL_PATH/data/pymol/matrices/"+matrix)
++        mfile = cmd.exp_path("$PYMOL_DATA/pymol/matrices/"+matrix)
+         if object==None: object=''
+         try:
+             lock()
+--- pymol-0.99rc8/modules/pymol/importing.py	2007-04-18 02:11:47.000000000 -0400
++++ importing.py	2007-04-24 02:18:46.000000000 -0400
+@@ -177,7 +177,7 @@
+         r = DEFAULT_ERROR
+         
+         
+-        tables = { 'cmyk' : "$PYMOL_PATH/data/pymol/cmyk.png",
++        tables = { 'cmyk' : "$PYMOL_DATA/pymol/cmyk.png",
+                       'pymol' : 'pymol',
+                       'rgb' : 'rgb' }
+ 
+--- pymol-0.99rc8/modules/pymol/wizard/mutagenesis.py	2007-04-18 02:11:50.000000000 -0400
++++ mutagenesis.py	2007-04-24 04:08:44.000000000 -0400
+@@ -35,8 +35,8 @@
+ 
+         self.dep = default_dep
+ 
+-        self.ind_library = io.pkl.fromFile(os.environ['PYMOL_PATH']+
+-                                           "/data/chempy/sidechains/sc_bb_ind.pkl")
++        self.ind_library = io.pkl.fromFile(os.environ['PYMOL_DATA']+
++                                           "/chempy/sidechains/sc_bb_ind.pkl")
+         self.load_library()
+         self.status = 0 # 0 no selection, 1 mutagenizing
+         self.bump_check = 1
+@@ -108,8 +108,8 @@
+     def load_library(self):
+         if self.dep == 'dep':
+             if not hasattr(self,'dep_library'):
+-                self.dep_library = io.pkl.fromFile(os.environ['PYMOL_PATH']+
+-                                           "/data/chempy/sidechains/sc_bb_dep.pkl")
++                self.dep_library = io.pkl.fromFile(os.environ['PYMOL_DATA']+
++                                           "/chempy/sidechains/sc_bb_dep.pkl")
+             
+     def set_mode(self,mode):
+         if mode in self.modes:
+