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authorSebastien Fabbro <bicatali@gentoo.org>2009-11-20 21:00:08 +0000
committerSebastien Fabbro <bicatali@gentoo.org>2009-11-20 21:00:08 +0000
commit1c79eeeda857cc7faa312074939c428a0b648f4d (patch)
treebdd864a84e56862208f340f2ff891b5b21c7fb4e /sci-libs
parentInitial commit wrt #293422. (diff)
downloadhistorical-1c79eeeda857cc7faa312074939c428a0b648f4d.tar.gz
historical-1c79eeeda857cc7faa312074939c428a0b648f4d.tar.bz2
historical-1c79eeeda857cc7faa312074939c428a0b648f4d.zip
Added doc flag, bug #293525, thanks Denilson
Package-Manager: portage-2.2_rc50/cvs/Linux x86_64
Diffstat (limited to 'sci-libs')
-rw-r--r--sci-libs/scipy/ChangeLog11
-rw-r--r--sci-libs/scipy/Manifest26
-rw-r--r--sci-libs/scipy/files/scipy-0.6.0-cdf.patch24
-rw-r--r--sci-libs/scipy/files/scipy-0.6.0-fftw-fix.patch12
-rw-r--r--sci-libs/scipy/files/scipy-0.6.0-implicit.patch28
-rw-r--r--sci-libs/scipy/files/scipy-0.6.0-ndimage.patch15
-rw-r--r--sci-libs/scipy/files/scipy-0.6.0-python-2.6-c_abs.patch309
-rw-r--r--sci-libs/scipy/files/scipy-0.6.0-randomkit.patch552
-rw-r--r--sci-libs/scipy/scipy-0.6.0-r6.ebuild147
-rw-r--r--sci-libs/scipy/scipy-0.7.0.ebuild126
-rw-r--r--sci-libs/scipy/scipy-0.7.1.ebuild30
11 files changed, 49 insertions, 1231 deletions
diff --git a/sci-libs/scipy/ChangeLog b/sci-libs/scipy/ChangeLog
index c615d984e654..0a4ae3823700 100644
--- a/sci-libs/scipy/ChangeLog
+++ b/sci-libs/scipy/ChangeLog
@@ -1,6 +1,15 @@
# ChangeLog for sci-libs/scipy
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.43 2009/09/04 21:31:22 arfrever Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.44 2009/11/20 21:00:08 bicatali Exp $
+
+ 20 Nov 2009; SĂ©bastien Fabbro <bicatali@gentoo.org>
+ -scipy-0.6.0-r6.ebuild, -files/scipy-0.6.0-cdf.patch,
+ -files/scipy-0.6.0-fftw-fix.patch, -files/scipy-0.6.0-implicit.patch,
+ -files/scipy-0.6.0-ndimage.patch,
+ -files/scipy-0.6.0-python-2.6-c_abs.patch,
+ -files/scipy-0.6.0-randomkit.patch, -scipy-0.7.0.ebuild,
+ scipy-0.7.1.ebuild:
+ Added doc flag, bug #293525, thanks Denilson
04 Sep 2009; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
scipy-0.7.1.ebuild:
diff --git a/sci-libs/scipy/Manifest b/sci-libs/scipy/Manifest
index fb9e6b347bbc..5769ec4c7814 100644
--- a/sci-libs/scipy/Manifest
+++ b/sci-libs/scipy/Manifest
@@ -1,16 +1,18 @@
-AUX scipy-0.6.0-cdf.patch 1200 RMD160 1656a3836925c869c06ecdd93e7e861fe2c4781d SHA1 13ca2f1e25ff6a32210b5399998c96da339e70df SHA256 0c45106a3b20d63af992630a7959c7bca772ccdff48d8caef98b76377420a9ca
-AUX scipy-0.6.0-fftw-fix.patch 535 RMD160 3a42973062b6b5834596ffd16ffccedb4ddc0818 SHA1 f472a8b4461b60b23226044d0096143b67c765e1 SHA256 2af135be8c16538d59e5e65743dc2a0d6408d7ea18affc5be2b3c766a1afd752
-AUX scipy-0.6.0-implicit.patch 833 RMD160 2338b23ac4e1acd53ebaf1160bf75b46566a83f5 SHA1 136476f1346f609d114779c0d68fea6c01c2f0ea SHA256 6f5ac0f8ba22cfed71013331a76f251bf165e371b978957a9ce0863a684bf2d9
-AUX scipy-0.6.0-ndimage.patch 782 RMD160 6f8fe88b8229d56340d8ff24d90e311ab1a934ea SHA1 7ccf18c48bad2a6489c8c5ae03bdb2667af19a0f SHA256 ec98e4ca10f1fe569833aa1f87ea05c71d7c43ea19563626f010c113fd24b30f
-AUX scipy-0.6.0-python-2.6-c_abs.patch 11696 RMD160 5aee547dd13213d89ec2b5f7e22c691af4c3eab3 SHA1 21e291ec671a75867d17e31b82e45282e893303e SHA256 5f080fc76e4e3d0c4bd20d9e87a3aaccaaad37513cc13fb894a647de5bf9889d
-AUX scipy-0.6.0-randomkit.patch 15283 RMD160 d59f0cfc56aa80c516ee48c82392c0e3db4b03f0 SHA1 90b4b64a4ecf28dfc418ad318c175221aa9aa8ab SHA256 6bf246b9393acf1183a0702dc0e752cbc8905ac1b94d5823cc4c76d6ae4b9a85
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
AUX scipy-0.6.0-stsci.patch 2209 RMD160 c7c21a23aef7fff9318f224ef2383f7970c1caf9 SHA1 4b86ad61346660959a61dce24b2b9f20595ea473 SHA256 69cec7cfedbc39a30f54ec12852a84017b5a256e966e60a64b4e891b497fd1be
AUX scipy-0.7.0_beta1-implicit.patch 905 RMD160 a22d5b5c7a67b3a806b63d7708654562fc241300 SHA1 40239fd3a77dc6f8cf9914a266953fd7b4ef41fe SHA256 cbde48ba3e22ef994b4ae0744c6186ef6d3ec608a74b3d0082f22d0be9591b96
-DIST scipy-0.6.0.tar.gz 6572954 RMD160 391f2067f7dcc133e7e8622df93a2a0cd5ebbe5b SHA1 65eff3e245f59b2af9adc70fad11daa40f0ba3e0 SHA256 5f70390963fb4e3ae8cf5effa301c160ef68c791098e2ea95b99380e298eac4f
-DIST scipy-0.7.0.tar.gz 4636167 RMD160 3583901f679cbc7f91560626f437d7edcd2bf6cf SHA1 7daef781253bafccf3be54b9eb3541f084503076 SHA256 fd788317cee1cd3be91699d88c813ad0d1190131851b04b025ac20a27b60467c
+DIST scipy-0.7-html.zip 5723344 RMD160 2629be4420fcad20bd7d9f080e01e4dcf7639c10 SHA1 3db044ef8603578e15754ae890a6e2fddcdadae9 SHA256 35e2e4e4a7aaba8c348175366c120b1a802951abe50af10458c532631e0133bb
+DIST scipy-0.7-ref.pdf 3380649 RMD160 88bda2a06bc20627afbb0354fbe57c1b82dda7eb SHA1 091e1df2d28ee85428c50ee268db56146be96746 SHA256 4acbd75979fabfea9ff9d0cf60e06520c1f4d372f5369add8294f72303d3d0e0
DIST scipy-0.7.1.tar.gz 4538765 RMD160 b3cb0b40a739cd8b61182f123581d57443b9401a SHA1 ab637e29743cc0c42903a8815043f85d13fb9e42 SHA256 08830d6363a8753ca1376dd22da86d164902711c5feaf0f768b5ee086b3ecd5f
-EBUILD scipy-0.6.0-r6.ebuild 4218 RMD160 04d4f4fd46c0ce2ceb33f6e838c421cf902c7318 SHA1 7a633ba12f69f25cecbb3acbf1a1f8c98c54ba4e SHA256 4226fbd68fa3311aa6f1cfb51b1c18c85559405f2eb1c487711d5040d3c92bd4
-EBUILD scipy-0.7.0.ebuild 3495 RMD160 78385941029724181ada0f03a81320056d633178 SHA1 1e071c89ee0a41ad0069a537557f384edc256590 SHA256 bf13a122f21b64427843afb97180b390657d6e0ca7badafa15d493147cec67db
-EBUILD scipy-0.7.1.ebuild 3420 RMD160 6dfcaff15f3c11371db7bdba79991ccee35da61e SHA1 c63ea3949589a34bf3b3ffb71f6e194ef9262757 SHA256 ab6a48214f050cdd2424366880b06e62b82053daae5534bcc3efa75c8334b886
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+EBUILD scipy-0.7.1.ebuild 3899 RMD160 05ccc9609785372455eddf66de8b83950de5d591 SHA1 e377cd8e0be83ad21fa63529be82cedfe1a3628a SHA256 d482fac534e239da10ec12089f8f85aa924de0bb7079beb959f64059e92ebdb4
+MISC ChangeLog 9966 RMD160 b30766c5d1afad1675c86a201bbe0df339912b12 SHA1 f49f4b02712854b2eaf44f6af1387f7d8c7c57ce SHA256 50e1365e8444caa0cf60555a63faa3fb1555872d03a6c499bc45888c81331f40
MISC metadata.xml 767 RMD160 40e85dc710adf535bdb947cf53cc0b733af047b2 SHA1 6541b0ddce3e394dbf79e86eea36a01bf4f6de55 SHA256 51cab078f50df6606d960384d9e66ccc13a3ba2c3a828c4a83e2c1beaf3116bf
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.13 (GNU/Linux)
+
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+TFgAn03n+sEXlTHeD8UjL88l/UaH77k/
+=rT9v
+-----END PGP SIGNATURE-----
diff --git a/sci-libs/scipy/files/scipy-0.6.0-cdf.patch b/sci-libs/scipy/files/scipy-0.6.0-cdf.patch
deleted file mode 100644
index c9bb2dbbb5c7..000000000000
--- a/sci-libs/scipy/files/scipy-0.6.0-cdf.patch
+++ /dev/null
@@ -1,24 +0,0 @@
---- scipy/special/setup.py.orig 2007-09-11 18:11:04.457232054 +0100
-+++ scipy/special/setup.py 2007-09-11 18:09:23.103456231 +0100
-@@ -20,9 +20,9 @@
- # Fortran libraries
- config.add_library('mach',sources=[join('mach','*.f')],
- config_fc={'noopt':(__file__,1)})
-- config.add_library('toms',sources=[join('amos','*.f')])
-- config.add_library('amos',sources=[join('toms','*.f')])
-- config.add_library('cdf',sources=[join('cdflib','*.f')])
-+ config.add_library('toms',sources=[join('toms','*.f')])
-+ config.add_library('amos',sources=[join('amos','*.f')])
-+ config.add_library('cdflib',sources=[join('cdflib','*.f')])
- config.add_library('specfun',sources=[join('specfun','*.f')])
-
- # Extension _cephes
-@@ -30,7 +30,7 @@
- 'toms_wrappers.c','cdf_wrappers.c','ufunc_extras.c']
- config.add_extension('_cephes', sources=sources,
- libraries=['amos','toms','c_misc','cephes','mach',
-- 'cdf', 'specfun'],
-+ 'cdflib', 'specfun'],
- define_macros = define_macros
- )
- # Extension specfun
diff --git a/sci-libs/scipy/files/scipy-0.6.0-fftw-fix.patch b/sci-libs/scipy/files/scipy-0.6.0-fftw-fix.patch
deleted file mode 100644
index 8db84dd8dcdd..000000000000
--- a/sci-libs/scipy/files/scipy-0.6.0-fftw-fix.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Naur scipy-0.6.0/scipy/fftpack/src/zfftnd_fftw.c scipy-0.6.0-new/scipy/fftpack/src/zfftnd_fftw.c
---- scipy-0.6.0/scipy/fftpack/src/zfftnd_fftw.c 2007-09-22 03:56:38.000000000 -0400
-+++ scipy-0.6.0-new/scipy/fftpack/src/zfftnd_fftw.c 2007-10-05 09:20:19.000000000 -0400
-@@ -25,7 +25,7 @@
- free(caches_zfftnd_fftw[id].dims);, 10)
-
-
--extern void zfftnd_mkl(complex_double * inout, int rank,
-+extern void zfftnd_fftw(complex_double * inout, int rank,
- int *dims, int direction, int howmany,
- int normalize)
- {
diff --git a/sci-libs/scipy/files/scipy-0.6.0-implicit.patch b/sci-libs/scipy/files/scipy-0.6.0-implicit.patch
deleted file mode 100644
index 8c1181342505..000000000000
--- a/sci-libs/scipy/files/scipy-0.6.0-implicit.patch
+++ /dev/null
@@ -1,28 +0,0 @@
---- scipy/linsolve/SuperLU/SRC/dcomplex.c 2007-09-22 03:55:18.000000000 -0400
-+++ scipy/linsolve/SuperLU/SRC/dcomplex.c 2008-07-03 08:04:15.000000000 -0400
-@@ -11,6 +11,7 @@
- */
- #include <math.h>
- #include <stdio.h>
-+#include <stdlib.h>
- #include "dcomplex.h"
-
-
---- scipy/linsolve/SuperLU/SRC/scomplex.c 2007-09-22 03:55:18.000000000 -0400
-+++ scipy/linsolve/SuperLU/SRC/scomplex.c 2008-07-03 08:04:34.000000000 -0400
-@@ -11,6 +11,7 @@
- */
- #include <math.h>
- #include <stdio.h>
-+#include <stdlib.h>
- #include "scomplex.h"
-
-
---- scipy/linsolve/SuperLU/SRC/xerbla.c 2007-09-22 03:55:18.000000000 -0400
-+++ scipy/linsolve/SuperLU/SRC/xerbla.c 2008-07-03 08:05:27.000000000 -0400
-@@ -1,3 +1,5 @@
-+#include <stdio.h>
-+
- /* Subroutine */ int xerbla_(char *srname, int *info)
- {
- /* -- LAPACK auxiliary routine (version 2.0) --
diff --git a/sci-libs/scipy/files/scipy-0.6.0-ndimage.patch b/sci-libs/scipy/files/scipy-0.6.0-ndimage.patch
deleted file mode 100644
index c5ee5b0fa442..000000000000
--- a/sci-libs/scipy/files/scipy-0.6.0-ndimage.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- scipy/ndimage/src/nd_image.h.orig 2008-01-21 01:20:06.010806667 +0000
-+++ scipy/ndimage/src/nd_image.h 2008-01-21 01:21:52.565386609 +0000
-@@ -273,12 +273,6 @@
- NA_ByteOrder(), 1, 1);
- }
-
--#define NA_OutputArray (*(PyArrayObject* (*) (PyObject*,NumarrayType,int) ) (void *) NA_OutputArray)
--#define NA_IoArray (*(PyArrayObject* (*) (PyObject*,NumarrayType,int) ) (void *) NA_IoArray)
--#define NA_NewArray (*(PyArrayObject* (*) (void* buffer, NumarrayType, int, ...) ) (void *) NA_NewArray )
--#define NA_elements (*(unsigned long (*) (PyArrayObject*) ) (void *) NA_elements)
--#define NA_InputArray (*(PyArrayObject* (*) (PyObject*,NumarrayType,int) ) (void *) NA_InputArray)
--
- #endif /* ND_IMPORT_ARRAY */
-
- #endif /* ND_IMAGE_H */
diff --git a/sci-libs/scipy/files/scipy-0.6.0-python-2.6-c_abs.patch b/sci-libs/scipy/files/scipy-0.6.0-python-2.6-c_abs.patch
deleted file mode 100644
index 569c108a5128..000000000000
--- a/sci-libs/scipy/files/scipy-0.6.0-python-2.6-c_abs.patch
+++ /dev/null
@@ -1,309 +0,0 @@
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cgsequ.c scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cgsequ.c
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cgsequ.c 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cgsequ.c 2008-11-11 17:32:10.000000000 +0100
-@@ -118,7 +118,7 @@
- for (j = 0; j < A->ncol; ++j)
- for (i = Astore->colptr[j]; i < Astore->colptr[j+1]; ++i) {
- irow = Astore->rowind[i];
-- r[irow] = SUPERLU_MAX( r[irow], c_abs1(&Aval[i]) );
-+ r[irow] = SUPERLU_MAX( r[irow], slu_c_abs1(&Aval[i]) );
- }
-
- /* Find the maximum and minimum scale factors. */
-@@ -153,7 +153,7 @@
- for (j = 0; j < A->ncol; ++j)
- for (i = Astore->colptr[j]; i < Astore->colptr[j+1]; ++i) {
- irow = Astore->rowind[i];
-- c[j] = SUPERLU_MAX( c[j], c_abs1(&Aval[i]) * r[irow] );
-+ c[j] = SUPERLU_MAX( c[j], slu_c_abs1(&Aval[i]) * r[irow] );
- }
-
- /* Find the maximum and minimum scale factors. */
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cgsrfs.c scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cgsrfs.c
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cgsrfs.c 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cgsrfs.c 2008-11-11 17:32:10.000000000 +0100
-@@ -276,21 +276,21 @@
- than SAFE2, then SAFE1 is added to the i-th component of the
- numerator and denominator before dividing. */
-
-- for (i = 0; i < A->nrow; ++i) rwork[i] = c_abs1( &Bptr[i] );
-+ for (i = 0; i < A->nrow; ++i) rwork[i] = slu_c_abs1( &Bptr[i] );
-
- /* Compute abs(op(A))*abs(X) + abs(B). */
- if (notran) {
- for (k = 0; k < A->ncol; ++k) {
-- xk = c_abs1( &Xptr[k] );
-+ xk = slu_c_abs1( &Xptr[k] );
- for (i = Astore->colptr[k]; i < Astore->colptr[k+1]; ++i)
-- rwork[Astore->rowind[i]] += c_abs1(&Aval[i]) * xk;
-+ rwork[Astore->rowind[i]] += slu_c_abs1(&Aval[i]) * xk;
- }
- } else {
- for (k = 0; k < A->ncol; ++k) {
- s = 0.;
- for (i = Astore->colptr[k]; i < Astore->colptr[k+1]; ++i) {
- irow = Astore->rowind[i];
-- s += c_abs1(&Aval[i]) * c_abs1(&Xptr[irow]);
-+ s += slu_c_abs1(&Aval[i]) * slu_c_abs1(&Xptr[irow]);
- }
- rwork[k] += s;
- }
-@@ -298,9 +298,9 @@
- s = 0.;
- for (i = 0; i < A->nrow; ++i) {
- if (rwork[i] > safe2)
-- s = SUPERLU_MAX( s, c_abs1(&work[i]) / rwork[i] );
-+ s = SUPERLU_MAX( s, slu_c_abs1(&work[i]) / rwork[i] );
- else
-- s = SUPERLU_MAX( s, (c_abs1(&work[i]) + safe1) /
-+ s = SUPERLU_MAX( s, (slu_c_abs1(&work[i]) + safe1) /
- (rwork[i] + safe1) );
- }
- berr[j] = s;
-@@ -351,22 +351,22 @@
- inv(op(A)) * diag(W),
- where W = abs(R) + NZ*EPS*( abs(op(A))*abs(X)+abs(B) ))) */
-
-- for (i = 0; i < A->nrow; ++i) rwork[i] = c_abs1( &Bptr[i] );
-+ for (i = 0; i < A->nrow; ++i) rwork[i] = slu_c_abs1( &Bptr[i] );
-
- /* Compute abs(op(A))*abs(X) + abs(B). */
- if ( notran ) {
- for (k = 0; k < A->ncol; ++k) {
-- xk = c_abs1( &Xptr[k] );
-+ xk = slu_c_abs1( &Xptr[k] );
- for (i = Astore->colptr[k]; i < Astore->colptr[k+1]; ++i)
-- rwork[Astore->rowind[i]] += c_abs1(&Aval[i]) * xk;
-+ rwork[Astore->rowind[i]] += slu_c_abs1(&Aval[i]) * xk;
- }
- } else {
- for (k = 0; k < A->ncol; ++k) {
- s = 0.;
- for (i = Astore->colptr[k]; i < Astore->colptr[k+1]; ++i) {
- irow = Astore->rowind[i];
-- xk = c_abs1( &Xptr[irow] );
-- s += c_abs1(&Aval[i]) * xk;
-+ xk = slu_c_abs1( &Xptr[irow] );
-+ s += slu_c_abs1(&Aval[i]) * xk;
- }
- rwork[k] += s;
- }
-@@ -374,9 +374,9 @@
-
- for (i = 0; i < A->nrow; ++i)
- if (rwork[i] > safe2)
-- rwork[i] = c_abs(&work[i]) + (iwork[i]+1)*eps*rwork[i];
-+ rwork[i] = slu_c_abs(&work[i]) + (iwork[i]+1)*eps*rwork[i];
- else
-- rwork[i] = c_abs(&work[i])+(iwork[i]+1)*eps*rwork[i]+safe1;
-+ rwork[i] = slu_c_abs(&work[i])+(iwork[i]+1)*eps*rwork[i]+safe1;
- kase = 0;
-
- do {
-@@ -424,13 +424,13 @@
- lstres = 0.;
- if ( notran && colequ ) {
- for (i = 0; i < A->nrow; ++i)
-- lstres = SUPERLU_MAX( lstres, C[i] * c_abs1( &Xptr[i]) );
-+ lstres = SUPERLU_MAX( lstres, C[i] * slu_c_abs1( &Xptr[i]) );
- } else if ( !notran && rowequ ) {
- for (i = 0; i < A->nrow; ++i)
-- lstres = SUPERLU_MAX( lstres, R[i] * c_abs1( &Xptr[i]) );
-+ lstres = SUPERLU_MAX( lstres, R[i] * slu_c_abs1( &Xptr[i]) );
- } else {
- for (i = 0; i < A->nrow; ++i)
-- lstres = SUPERLU_MAX( lstres, c_abs1( &Xptr[i]) );
-+ lstres = SUPERLU_MAX( lstres, slu_c_abs1( &Xptr[i]) );
- }
- if ( lstres != 0. )
- ferr[j] /= lstres;
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/clacon.c scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/clacon.c
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/clacon.c 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/clacon.c 2008-11-11 17:32:10.000000000 +0100
-@@ -106,14 +106,14 @@
- L20:
- if (*n == 1) {
- v[0] = x[0];
-- *est = c_abs(&v[0]);
-+ *est = slu_c_abs(&v[0]);
- /* ... QUIT */
- goto L150;
- }
- *est = scsum1_(n, x, &c__1);
-
- for (i = 0; i < *n; ++i) {
-- d__1 = c_abs(&x[i]);
-+ d__1 = slu_c_abs(&x[i]);
- if (d__1 > safmin) {
- d__1 = 1 / d__1;
- x[i].r *= d__1;
-@@ -158,7 +158,7 @@
- if (*est <= estold) goto L120;
-
- for (i = 0; i < *n; ++i) {
-- d__1 = c_abs(&x[i]);
-+ d__1 = slu_c_abs(&x[i]);
- if (d__1 > safmin) {
- d__1 = 1 / d__1;
- x[i].r *= d__1;
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/clangs.c scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/clangs.c
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/clangs.c 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/clangs.c 2008-11-11 17:32:10.000000000 +0100
-@@ -72,7 +72,7 @@
- value = 0.;
- for (j = 0; j < A->ncol; ++j)
- for (i = Astore->colptr[j]; i < Astore->colptr[j+1]; i++)
-- value = SUPERLU_MAX( value, c_abs( &Aval[i]) );
-+ value = SUPERLU_MAX( value, slu_c_abs( &Aval[i]) );
-
- } else if (lsame_(norm, "O") || *(unsigned char *)norm == '1') {
- /* Find norm1(A). */
-@@ -80,7 +80,7 @@
- for (j = 0; j < A->ncol; ++j) {
- sum = 0.;
- for (i = Astore->colptr[j]; i < Astore->colptr[j+1]; i++)
-- sum += c_abs( &Aval[i] );
-+ sum += slu_c_abs( &Aval[i] );
- value = SUPERLU_MAX(value,sum);
- }
-
-@@ -92,7 +92,7 @@
- for (j = 0; j < A->ncol; ++j)
- for (i = Astore->colptr[j]; i < Astore->colptr[j+1]; i++) {
- irow = Astore->rowind[i];
-- rwork[irow] += c_abs( &Aval[i] );
-+ rwork[irow] += slu_c_abs( &Aval[i] );
- }
- value = 0.;
- for (i = 0; i < A->nrow; ++i)
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cpivotgrowth.c scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cpivotgrowth.c
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cpivotgrowth.c 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cpivotgrowth.c 2008-11-11 17:32:10.000000000 +0100
-@@ -83,15 +83,15 @@
- maxaj = 0.;
- oldcol = inv_perm_c[j];
- for (i = Astore->colptr[oldcol]; i < Astore->colptr[oldcol+1]; ++i)
-- maxaj = SUPERLU_MAX( maxaj, c_abs1( &Aval[i]) );
-+ maxaj = SUPERLU_MAX( maxaj, slu_c_abs1( &Aval[i]) );
-
- maxuj = 0.;
- for (i = Ustore->colptr[j]; i < Ustore->colptr[j+1]; i++)
-- maxuj = SUPERLU_MAX( maxuj, c_abs1( &Uval[i]) );
-+ maxuj = SUPERLU_MAX( maxuj, slu_c_abs1( &Uval[i]) );
-
- /* Supernode */
- for (i = 0; i < nz_in_U; ++i)
-- maxuj = SUPERLU_MAX( maxuj, c_abs1( &luval[i]) );
-+ maxuj = SUPERLU_MAX( maxuj, slu_c_abs1( &luval[i]) );
-
- ++nz_in_U;
- luval += nsupr;
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cpivotL.c scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cpivotL.c
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cpivotL.c 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cpivotL.c 2008-11-11 17:32:10.000000000 +0100
-@@ -106,7 +106,7 @@
- diag = EMPTY;
- old_pivptr = nsupc;
- for (isub = nsupc; isub < nsupr; ++isub) {
-- rtemp = c_abs1 (&lu_col_ptr[isub]);
-+ rtemp = slu_c_abs1 (&lu_col_ptr[isub]);
- if ( rtemp > pivmax ) {
- pivmax = rtemp;
- pivptr = isub;
-@@ -127,7 +127,7 @@
-
- /* Choose appropriate pivotal element by our policy. */
- if ( *usepr ) {
-- rtemp = c_abs1 (&lu_col_ptr[old_pivptr]);
-+ rtemp = slu_c_abs1 (&lu_col_ptr[old_pivptr]);
- if ( rtemp != 0.0 && rtemp >= thresh )
- pivptr = old_pivptr;
- else
-@@ -136,7 +136,7 @@
- if ( *usepr == 0 ) {
- /* Use diagonal pivot? */
- if ( diag >= 0 ) { /* diagonal exists */
-- rtemp = c_abs1 (&lu_col_ptr[diag]);
-+ rtemp = slu_c_abs1 (&lu_col_ptr[diag]);
- if ( rtemp != 0.0 && rtemp >= thresh ) pivptr = diag;
- }
- *pivrow = lsub_ptr[pivptr];
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cutil.c scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cutil.c
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/cutil.c 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/cutil.c 2008-11-11 17:32:10.000000000 +0100
-@@ -414,8 +414,8 @@
- err = xnorm = 0.0;
- for (i = 0; i < X->nrow; i++) {
- c_sub(&temp, &soln_work[i], &xtrue[i]);
-- err = SUPERLU_MAX(err, c_abs(&temp));
-- xnorm = SUPERLU_MAX(xnorm, c_abs(&soln_work[i]));
-+ err = SUPERLU_MAX(err, slu_c_abs(&temp));
-+ xnorm = SUPERLU_MAX(xnorm, slu_c_abs(&soln_work[i]));
- }
- err = err / xnorm;
- printf("||X - Xtrue||/||X|| = %e\n", err);
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/scomplex.c scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/scomplex.c
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/scomplex.c 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/scomplex.c 2008-11-11 17:32:10.000000000 +0100
-@@ -45,7 +45,7 @@
-
-
- /* Returns sqrt(z.r^2 + z.i^2) */
--double c_abs(complex *z)
-+double slu_c_abs(complex *z)
- {
- float temp;
- float real = z->r;
-@@ -68,7 +68,7 @@
-
- /* Approximates the abs */
- /* Returns abs(z.r) + abs(z.i) */
--double c_abs1(complex *z)
-+double slu_c_abs1(complex *z)
- {
- float real = z->r;
- float imag = z->i;
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/scomplex.h scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/scomplex.h
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/scomplex.h 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/scomplex.h 2008-11-11 17:32:10.000000000 +0100
-@@ -57,8 +57,8 @@
-
- /* Prototypes for functions in scomplex.c */
- void c_div(complex *, complex *, complex *);
--double c_abs(complex *); /* exact */
--double c_abs1(complex *); /* approximate */
-+double slu_c_abs(complex *); /* exact */
-+double slu_c_abs1(complex *); /* approximate */
- void c_exp(complex *, complex *);
- void r_cnjg(complex *, complex *);
- double r_imag(complex *);
-diff -ur scipy-0.6.0/scipy/linsolve/SuperLU/SRC/scsum1.c scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/scsum1.c
---- scipy-0.6.0/scipy/linsolve/SuperLU/SRC/scsum1.c 2007-09-22 09:55:18.000000000 +0200
-+++ scipy-svn/scipy/sparse/linalg/dsolve/SuperLU/SRC/scsum1.c 2008-11-11 17:32:10.000000000 +0100
-@@ -42,7 +42,7 @@
- int i__1, i__2;
- float ret_val;
- /* Builtin functions */
-- double c_abs(complex *);
-+ double slu_c_abs(complex *);
- /* Local variables */
- static int i, nincx;
- static float stemp;
-@@ -69,7 +69,7 @@
-
- /* NEXT LINE MODIFIED. */
-
-- stemp += c_abs(&CX(i));
-+ stemp += slu_c_abs(&CX(i));
- /* L10: */
- }
- ret_val = stemp;
-@@ -83,7 +83,7 @@
-
- /* NEXT LINE MODIFIED. */
-
-- stemp += c_abs(&CX(i));
-+ stemp += slu_c_abs(&CX(i));
- /* L30: */
- }
- ret_val = stemp;
diff --git a/sci-libs/scipy/files/scipy-0.6.0-randomkit.patch b/sci-libs/scipy/files/scipy-0.6.0-randomkit.patch
deleted file mode 100644
index f760d4c33048..000000000000
--- a/sci-libs/scipy/files/scipy-0.6.0-randomkit.patch
+++ /dev/null
@@ -1,552 +0,0 @@
---- scipy/sandbox/montecarlo/src/randomkit.c.orig 1970-01-01 01:00:00.000000000 +0100
-+++ scipy/sandbox/montecarlo/src/randomkit.c 2007-06-06 17:15:22.505066000 +0100
-@@ -0,0 +1,357 @@
-+/* Random kit 1.3 */
-+
-+/*
-+ * Copyright (c) 2003-2005, Jean-Sebastien Roy (js@jeannot.org)
-+ *
-+ * The rk_random and rk_seed functions algorithms and the original design of
-+ * the Mersenne Twister RNG:
-+ *
-+ * Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura,
-+ * All rights reserved.
-+ *
-+ * Redistribution and use in source and binary forms, with or without
-+ * modification, are permitted provided that the following conditions
-+ * are met:
-+ *
-+ * 1. Redistributions of source code must retain the above copyright
-+ * notice, this list of conditions and the following disclaimer.
-+ *
-+ * 2. Redistributions in binary form must reproduce the above copyright
-+ * notice, this list of conditions and the following disclaimer in the
-+ * documentation and/or other materials provided with the distribution.
-+ *
-+ * 3. The names of its contributors may not be used to endorse or promote
-+ * products derived from this software without specific prior written
-+ * permission.
-+ *
-+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
-+ * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
-+ * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
-+ * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
-+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
-+ * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-+ * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
-+ * PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
-+ * LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-+ * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-+ * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-+ *
-+ * Original algorithm for the implementation of rk_interval function from
-+ * Richard J. Wagner's implementation of the Mersenne Twister RNG, optimised by
-+ * Magnus Jonsson.
-+ *
-+ * Constants used in the rk_double implementation by Isaku Wada.
-+ *
-+ * Permission is hereby granted, free of charge, to any person obtaining a
-+ * copy of this software and associated documentation files (the
-+ * "Software"), to deal in the Software without restriction, including
-+ * without limitation the rights to use, copy, modify, merge, publish,
-+ * distribute, sublicense, and/or sell copies of the Software, and to
-+ * permit persons to whom the Software is furnished to do so, subject to
-+ * the following conditions:
-+ *
-+ * The above copyright notice and this permission notice shall be included
-+ * in all copies or substantial portions of the Software.
-+ *
-+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
-+ * OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-+ * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
-+ * IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
-+ * CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
-+ * TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
-+ * SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-+ */
-+
-+/* static char const rcsid[] =
-+ "@(#) $Jeannot: randomkit.c,v 1.28 2005/07/21 22:14:09 js Exp $"; */
-+
-+#include <stddef.h>
-+#include <stdio.h>
-+#include <stdlib.h>
-+#include <errno.h>
-+#include <time.h>
-+#include <limits.h>
-+#include <math.h>
-+
-+#ifdef _WIN32
-+/* Windows */
-+#include <sys/timeb.h>
-+#ifndef RK_NO_WINCRYPT
-+/* Windows crypto */
-+#ifndef _WIN32_WINNT
-+#define _WIN32_WINNT 0x0400
-+#endif
-+#include <windows.h>
-+#include <wincrypt.h>
-+#endif
-+#else
-+/* Unix */
-+#include <sys/time.h>
-+#include <unistd.h>
-+#endif
-+
-+#include "randomkit.h"
-+
-+#ifndef RK_DEV_URANDOM
-+#define RK_DEV_URANDOM "/dev/urandom"
-+#endif
-+
-+#ifndef RK_DEV_RANDOM
-+#define RK_DEV_RANDOM "/dev/random"
-+#endif
-+
-+char *rk_strerror[RK_ERR_MAX] =
-+{
-+ "no error",
-+ "random device unvavailable"
-+};
-+
-+/* static functions */
-+static unsigned long rk_hash(unsigned long key);
-+
-+void rk_seed(unsigned long seed, rk_state *state)
-+{
-+ int pos;
-+ seed &= 0xffffffffUL;
-+
-+ /* Knuth's PRNG as used in the Mersenne Twister reference implementation */
-+ for (pos=0; pos<RK_STATE_LEN; pos++)
-+ {
-+ state->key[pos] = seed;
-+ seed = (1812433253UL * (seed ^ (seed >> 30)) + pos + 1) & 0xffffffffUL;
-+ }
-+
-+ state->pos = RK_STATE_LEN;
-+ state->has_gauss = 0;
-+ state->has_binomial = 0;
-+}
-+
-+/* Thomas Wang 32 bits integer hash function */
-+unsigned long rk_hash(unsigned long key)
-+{
-+ key += ~(key << 15);
-+ key ^= (key >> 10);
-+ key += (key << 3);
-+ key ^= (key >> 6);
-+ key += ~(key << 11);
-+ key ^= (key >> 16);
-+ return key;
-+}
-+
-+rk_error rk_randomseed(rk_state *state)
-+{
-+#ifndef _WIN32
-+ struct timeval tv;
-+#else
-+ struct _timeb tv;
-+#endif
-+ int i;
-+
-+ if(rk_devfill(state->key, sizeof(state->key), 0) == RK_NOERR)
-+ {
-+ state->key[0] |= 0x80000000UL; /* ensures non-zero key */
-+ state->pos = RK_STATE_LEN;
-+ state->has_gauss = 0;
-+ state->has_binomial = 0;
-+
-+ for (i=0; i<624; i++)
-+ {
-+ state->key[i] &= 0xffffffffUL;
-+ }
-+
-+ return RK_NOERR;
-+ }
-+
-+#ifndef _WIN32
-+ gettimeofday(&tv, NULL);
-+ rk_seed(rk_hash(getpid()) ^ rk_hash(tv.tv_sec) ^ rk_hash(tv.tv_usec)
-+ ^ rk_hash(clock()), state);
-+#else
-+ _ftime(&tv);
-+ rk_seed(rk_hash(tv.time) ^ rk_hash(tv.millitm) ^ rk_hash(clock()), state);
-+#endif
-+
-+ return RK_ENODEV;
-+}
-+
-+/* Magic Mersenne Twister constants */
-+#define N 624
-+#define M 397
-+#define MATRIX_A 0x9908b0dfUL
-+#define UPPER_MASK 0x80000000UL
-+#define LOWER_MASK 0x7fffffffUL
-+
-+/* Slightly optimised reference implementation of the Mersenne Twister */
-+unsigned long rk_random(rk_state *state)
-+{
-+ unsigned long y;
-+
-+ if (state->pos == RK_STATE_LEN)
-+ {
-+ int i;
-+
-+ for (i=0;i<N-M;i++)
-+ {
-+ y = (state->key[i] & UPPER_MASK) | (state->key[i+1] & LOWER_MASK);
-+ state->key[i] = state->key[i+M] ^ (y>>1) ^ (-(y & 1) & MATRIX_A);
-+ }
-+ for (;i<N-1;i++)
-+ {
-+ y = (state->key[i] & UPPER_MASK) | (state->key[i+1] & LOWER_MASK);
-+ state->key[i] = state->key[i+(M-N)] ^ (y>>1) ^ (-(y & 1) & MATRIX_A);
-+ }
-+ y = (state->key[N-1] & UPPER_MASK) | (state->key[0] & LOWER_MASK);
-+ state->key[N-1] = state->key[M-1] ^ (y>>1) ^ (-(y & 1) & MATRIX_A);
-+
-+ state->pos = 0;
-+ }
-+
-+ y = state->key[state->pos++];
-+
-+ /* Tempering */
-+ y ^= (y >> 11);
-+ y ^= (y << 7) & 0x9d2c5680UL;
-+ y ^= (y << 15) & 0xefc60000UL;
-+ y ^= (y >> 18);
-+
-+ return y;
-+}
-+
-+long rk_long(rk_state *state)
-+{
-+ return rk_ulong(state) >> 1;
-+}
-+
-+unsigned long rk_ulong(rk_state *state)
-+{
-+#if ULONG_MAX <= 0xffffffffUL
-+ return rk_random(state);
-+#else
-+ return (rk_random(state) << 32) | (rk_random(state));
-+#endif
-+}
-+
-+unsigned long rk_interval(unsigned long max, rk_state *state)
-+{
-+ unsigned long mask = max, value;
-+
-+ if (max == 0) return 0;
-+
-+ /* Smallest bit mask >= max */
-+ mask |= mask >> 1;
-+ mask |= mask >> 2;
-+ mask |= mask >> 4;
-+ mask |= mask >> 8;
-+ mask |= mask >> 16;
-+#if ULONG_MAX > 0xffffffffUL
-+ mask |= mask >> 32;
-+#endif
-+
-+ /* Search a random value in [0..mask] <= max */
-+ while ((value = (rk_ulong(state) & mask)) > max);
-+
-+ return value;
-+}
-+
-+double rk_double(rk_state *state)
-+{
-+ /* shifts : 67108864 = 0x4000000, 9007199254740992 = 0x20000000000000 */
-+ long a = rk_random(state) >> 5, b = rk_random(state) >> 6;
-+ return (a * 67108864.0 + b) / 9007199254740992.0;
-+}
-+
-+void rk_fill(void *buffer, size_t size, rk_state *state)
-+{
-+ unsigned long r;
-+ unsigned char *buf = buffer;
-+
-+ for (; size >= 4; size -= 4)
-+ {
-+ r = rk_random(state);
-+ *(buf++) = r & 0xFF;
-+ *(buf++) = (r >> 8) & 0xFF;
-+ *(buf++) = (r >> 16) & 0xFF;
-+ *(buf++) = (r >> 24) & 0xFF;
-+ }
-+
-+ if (!size) return;
-+
-+ r = rk_random(state);
-+
-+ for (; size; r >>= 8, size --)
-+ *(buf++) = (unsigned char)(r & 0xFF);
-+}
-+
-+rk_error rk_devfill(void *buffer, size_t size, int strong)
-+{
-+#ifndef _WIN32
-+ FILE *rfile;
-+ int done;
-+
-+ if (strong)
-+ rfile = fopen(RK_DEV_RANDOM, "rb");
-+ else
-+ rfile = fopen(RK_DEV_URANDOM, "rb");
-+ if (rfile == NULL)
-+ return RK_ENODEV;
-+ done = fread(buffer, size, 1, rfile);
-+ fclose(rfile);
-+ if (done)
-+ return RK_NOERR;
-+#else
-+
-+#ifndef RK_NO_WINCRYPT
-+ HCRYPTPROV hCryptProv;
-+ BOOL done;
-+
-+ if (!CryptAcquireContext(&hCryptProv, NULL, NULL, PROV_RSA_FULL,
-+ CRYPT_VERIFYCONTEXT) || !hCryptProv)
-+ return RK_ENODEV;
-+ done = CryptGenRandom(hCryptProv, size, (unsigned char *)buffer);
-+ CryptReleaseContext(hCryptProv, 0);
-+ if (done)
-+ return RK_NOERR;
-+#endif
-+
-+#endif
-+
-+ return RK_ENODEV;
-+}
-+
-+rk_error rk_altfill(void *buffer, size_t size, int strong, rk_state *state)
-+{
-+ rk_error err;
-+
-+ err = rk_devfill(buffer, size, strong);
-+ if (err)
-+ rk_fill(buffer, size, state);
-+
-+ return err;
-+}
-+
-+double rk_gauss(rk_state *state)
-+{
-+ if (state->has_gauss)
-+ {
-+ state->has_gauss = 0;
-+ return state->gauss;
-+ }
-+ else
-+ {
-+ double f, x1, x2, r2;
-+ do
-+ {
-+ x1 = 2.0*rk_double(state) - 1.0;
-+ x2 = 2.0*rk_double(state) - 1.0;
-+ r2 = x1*x1 + x2*x2;
-+ }
-+ while (r2 >= 1.0 || r2 == 0.0);
-+
-+ f = sqrt(-2.0*log(r2)/r2); /* Box-Muller transform */
-+ state->has_gauss = 1;
-+ state->gauss = f*x1; /* Keep for next call */
-+ return f*x2;
-+ }
-+}
-+
-+
---- scipy/sandbox/montecarlo/src/randomkit.h.orig 1970-01-01 01:00:00.000000000 +0100
-+++ scipy/sandbox/montecarlo/src/randomkit.h 2007-06-06 17:15:22.505066000 +0100
-@@ -0,0 +1,189 @@
-+/* Random kit 1.3 */
-+
-+/*
-+ * Copyright (c) 2003-2005, Jean-Sebastien Roy (js@jeannot.org)
-+ *
-+ * Permission is hereby granted, free of charge, to any person obtaining a
-+ * copy of this software and associated documentation files (the
-+ * "Software"), to deal in the Software without restriction, including
-+ * without limitation the rights to use, copy, modify, merge, publish,
-+ * distribute, sublicense, and/or sell copies of the Software, and to
-+ * permit persons to whom the Software is furnished to do so, subject to
-+ * the following conditions:
-+ *
-+ * The above copyright notice and this permission notice shall be included
-+ * in all copies or substantial portions of the Software.
-+ *
-+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
-+ * OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-+ * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
-+ * IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
-+ * CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
-+ * TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
-+ * SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-+ */
-+
-+/* @(#) $Jeannot: randomkit.h,v 1.24 2005/07/21 22:14:09 js Exp $ */
-+
-+/*
-+ * Typical use:
-+ *
-+ * {
-+ * rk_state state;
-+ * unsigned long seed = 1, random_value;
-+ *
-+ * rk_seed(seed, &state); // Initialize the RNG
-+ * ...
-+ * random_value = rk_random(&state); // Generate random values in [0..RK_MAX]
-+ * }
-+ *
-+ * Instead of rk_seed, you can use rk_randomseed which will get a random seed
-+ * from /dev/urandom (or the clock, if /dev/urandom is unavailable):
-+ *
-+ * {
-+ * rk_state state;
-+ * unsigned long random_value;
-+ *
-+ * rk_randomseed(&state); // Initialize the RNG with a random seed
-+ * ...
-+ * random_value = rk_random(&state); // Generate random values in [0..RK_MAX]
-+ * }
-+ */
-+
-+/*
-+ * Useful macro:
-+ * RK_DEV_RANDOM: the device used for random seeding.
-+ * defaults to "/dev/urandom"
-+ */
-+
-+#include <stddef.h>
-+
-+#ifndef _RANDOMKIT_
-+#define _RANDOMKIT_
-+
-+#define RK_STATE_LEN 624
-+
-+typedef struct rk_state_
-+{
-+ unsigned long key[RK_STATE_LEN];
-+ int pos;
-+ int has_gauss; /* !=0: gauss contains a gaussian deviate */
-+ double gauss;
-+
-+ /* The rk_state structure has been extended to store the following
-+ * information for the binomial generator. If the input values of n or p
-+ * are different than nsave and psave, then the other parameters will be
-+ * recomputed. RTK 2005-09-02 */
-+
-+ int has_binomial; /* !=0: following parameters initialized for
-+ binomial */
-+ double psave;
-+ long nsave;
-+ double r;
-+ double q;
-+ double fm;
-+ long m;
-+ double p1;
-+ double xm;
-+ double xl;
-+ double xr;
-+ double c;
-+ double laml;
-+ double lamr;
-+ double p2;
-+ double p3;
-+ double p4;
-+
-+}
-+rk_state;
-+
-+typedef enum {
-+ RK_NOERR = 0, /* no error */
-+ RK_ENODEV = 1, /* no RK_DEV_RANDOM device */
-+ RK_ERR_MAX = 2
-+} rk_error;
-+
-+/* error strings */
-+extern char *rk_strerror[RK_ERR_MAX];
-+
-+/* Maximum generated random value */
-+#define RK_MAX 0xFFFFFFFFUL
-+
-+#ifdef __cplusplus
-+extern "C" {
-+#endif
-+
-+/*
-+ * Initialize the RNG state using the given seed.
-+ */
-+extern void rk_seed(unsigned long seed, rk_state *state);
-+
-+/*
-+ * Initialize the RNG state using a random seed.
-+ * Uses /dev/random or, when unavailable, the clock (see randomkit.c).
-+ * Returns RK_NOERR when no errors occurs.
-+ * Returns RK_ENODEV when the use of RK_DEV_RANDOM failed (for example because
-+ * there is no such device). In this case, the RNG was initialized using the
-+ * clock.
-+ */
-+extern rk_error rk_randomseed(rk_state *state);
-+
-+/*
-+ * Returns a random unsigned long between 0 and RK_MAX inclusive
-+ */
-+extern unsigned long rk_random(rk_state *state);
-+
-+/*
-+ * Returns a random long between 0 and LONG_MAX inclusive
-+ */
-+extern long rk_long(rk_state *state);
-+
-+/*
-+ * Returns a random unsigned long between 0 and ULONG_MAX inclusive
-+ */
-+extern unsigned long rk_ulong(rk_state *state);
-+
-+/*
-+ * Returns a random unsigned long between 0 and max inclusive.
-+ */
-+extern unsigned long rk_interval(unsigned long max, rk_state *state);
-+
-+/*
-+ * Returns a random double between 0.0 and 1.0, 1.0 excluded.
-+ */
-+extern double rk_double(rk_state *state);
-+
-+/*
-+ * fill the buffer with size random bytes
-+ */
-+extern void rk_fill(void *buffer, size_t size, rk_state *state);
-+
-+/*
-+ * fill the buffer with randombytes from the random device
-+ * Returns RK_ENODEV if the device is unavailable, or RK_NOERR if it is
-+ * On Unix, if strong is defined, RK_DEV_RANDOM is used. If not, RK_DEV_URANDOM
-+ * is used instead. This parameter has no effect on Windows.
-+ * Warning: on most unixes RK_DEV_RANDOM will wait for enough entropy to answer
-+ * which can take a very long time on quiet systems.
-+ */
-+extern rk_error rk_devfill(void *buffer, size_t size, int strong);
-+
-+/*
-+ * fill the buffer using rk_devfill if the random device is available and using
-+ * rk_fill if is is not
-+ * parameters have the same meaning as rk_fill and rk_devfill
-+ * Returns RK_ENODEV if the device is unavailable, or RK_NOERR if it is
-+ */
-+extern rk_error rk_altfill(void *buffer, size_t size, int strong,
-+ rk_state *state);
-+
-+/*
-+ * return a random gaussian deviate with variance unity and zero mean.
-+ */
-+extern double rk_gauss(rk_state *state);
-+
-+#ifdef __cplusplus
-+}
-+#endif
-+
-+#endif /* _RANDOMKIT_ */
diff --git a/sci-libs/scipy/scipy-0.6.0-r6.ebuild b/sci-libs/scipy/scipy-0.6.0-r6.ebuild
deleted file mode 100644
index a347efe7a8e0..000000000000
--- a/sci-libs/scipy/scipy-0.6.0-r6.ebuild
+++ /dev/null
@@ -1,147 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.6.0-r6.ebuild,v 1.2 2009/02/20 10:29:30 bicatali Exp $
-
-EAPI=2
-NEED_PYTHON=2.3
-inherit eutils distutils fortran flag-o-matic
-
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="http://www.scipy.org/"
-LICENSE="BSD"
-
-SLOT="0"
-
-IUSE="fftw umfpack sandbox"
-
-KEYWORDS="~amd64 ~ppc ~ppc64 ~x86"
-
-CDEPEND="dev-python/numpy
- virtual/cblas
- virtual/lapack
- fftw? ( sci-libs/fftw:2.1 )
- umfpack? ( sci-libs/umfpack )
- sandbox? ( >=sci-libs/netcdf-3.6 x11-libs/libX11 )"
-
-DEPEND="${CDEPEND}
- dev-util/pkgconfig
- umfpack? ( || ( >=dev-lang/swig-1.3.38 <=dev-lang/swig-1.3.36[python] ) )"
-
-RDEPEND="${CDEPEND}
- dev-python/imaging"
-
-# test still buggy on lapack with 2 failures on check_syevr
-# (lapack float). check every version bump.
-#RESTRICT="test"
-
-DOCS="THANKS.txt DEVELOPERS.txt LATEST.txt TOCHANGE.txt FORMAT_GUIDELINES.txt"
-
-scipy_fortran_setup() {
- append-ldflags -shared
- FORTRAN="gfortran g77 ifc"
- fortran_pkg_setup
- local fc=
- case ${FORTRANC} in
- gfortran) fc=gnu95 ;;
- g77) fc=gnu ;;
- ifc|ifort)
- if use ia64; then
- fc=intele
- elif use amd64; then
- fc=intelem
- else
- fc=intel
- fi
- ;;
- *) eerror "Unknown fortran compiler: ${FORTRANC}"
- die "scipy_fortran_setup failed" ;;
- esac
- export SCIPY_FCONFIG="config_fc --fcompiler=${fc} --noopt --noarch"
-}
-
-pkg_setup() {
- # scipy automatically detects libraries by default
- export {FFTW,FFTW3,UMFPACK}=None
- use fftw && unset FFTW
- use umfpack && unset UMFPACK
- use sandbox && elog "Warning: using sandbox modules at your own risk!"
- scipy_fortran_setup
-}
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-implicit.patch
- epatch "${FILESDIR}"/${P}-randomkit.patch
- epatch "${FILESDIR}"/${P}-cdf.patch
- epatch "${FILESDIR}"/${P}-fftw-fix.patch
- epatch "${FILESDIR}"/${P}-ndimage.patch
- epatch "${FILESDIR}"/${P}-python-2.6-c_abs.patch
- epatch "${FILESDIR}"/${P}-stsci.patch
- cat > site.cfg <<-EOF
- [DEFAULT]
- library_dirs = /usr/$(get_libdir)
- include_dirs = /usr/include
- [atlas]
- include_dirs = $(pkg-config --cflags-only-I \
- cblas | sed -e 's/^-I//' -e 's/ -I/:/g')
- library_dirs = $(pkg-config --libs-only-L \
- cblas blas lapack| sed -e \
- 's/^-L//' -e 's/ -L/:/g' -e 's/ //g'):/usr/$(get_libdir)
- atlas_libs = $(pkg-config --libs-only-l \
- cblas blas | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
- lapack_libs = $(pkg-config --libs-only-l \
- lapack | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
- [blas_opt]
- include_dirs = $(pkg-config --cflags-only-I \
- cblas | sed -e 's/^-I//' -e 's/ -I/:/g')
- library_dirs = $(pkg-config --libs-only-L \
- cblas blas | sed -e 's/^-L//' -e 's/ -L/:/g' \
- -e 's/ //g'):/usr/$(get_libdir)
- libraries = $(pkg-config --libs-only-l \
- cblas blas | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
- [lapack_opt]
- library_dirs = $(pkg-config --libs-only-L \
- lapack | sed -e 's/^-L//' -e 's/ -L/:/g' \
- -e 's/ //g'):/usr/$(get_libdir)
- libraries = $(pkg-config --libs-only-l \
- lapack | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
- EOF
- if use sandbox; then
- cd scipy/sandbox
- ls -1 */__init__.py \
- | sed -e 's:/__init__.py::' \
- | grep -v exmplpackage \
- > enabled_packages.txt \
- || die "sandbox listing failed"
- fi
-}
-
-src_compile() {
- # when fortran flags are set, pic is removed.
- [[ -n ${FFLAGS} ]] && FFLAGS="${FFLAGS} -fPIC"
- distutils_src_compile ${SCIPY_FCONFIG}
-}
-
-src_test() {
- "${python}" setup.py install \
- --home="${S}"/test \
- --no-compile \
- ${SCIPY_FCONFIG} || die "install test failed"
- pushd "${S}"/test/lib*/python
- PYTHONPATH=. "${python}" -c \
- "import scipy as s;import sys;sys.exit(s.test(10,3))" \
- 2>&1 | tee test.log
- grep -q OK test.log || die "test failed"
- popd
- rm -rf test
-}
-
-src_install() {
- distutils_src_install ${SCIPY_FCONFIG}
-}
-
-pkg_postinst() {
- elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
- elog "to your prefered image viewer if you don't like the default one. Ex:"
- elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}
diff --git a/sci-libs/scipy/scipy-0.7.0.ebuild b/sci-libs/scipy/scipy-0.7.0.ebuild
deleted file mode 100644
index f72a762010b5..000000000000
--- a/sci-libs/scipy/scipy-0.7.0.ebuild
+++ /dev/null
@@ -1,126 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.7.0.ebuild,v 1.2 2009/02/20 10:29:30 bicatali Exp $
-
-EAPI=2
-NEED_PYTHON=2.4
-
-inherit eutils distutils fortran flag-o-matic
-
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="http://www.scipy.org/"
-LICENSE="BSD"
-
-SLOT="0"
-
-IUSE="test umfpack"
-
-KEYWORDS="~amd64 ~ppc ~ppc64 ~x86"
-
-CDEPEND=">=dev-python/numpy-1.2
- virtual/cblas
- virtual/lapack
- umfpack? ( sci-libs/umfpack )"
-
-DEPEND="${CDEPEND}
- dev-util/pkgconfig
- test? ( dev-python/nose )
- umfpack? ( || ( >=dev-lang/swig-1.3.38 <=dev-lang/swig-1.3.36[python] ) )"
-
-RDEPEND="${CDEPEND}
- dev-python/imaging"
-
-DOCS="THANKS.txt LATEST.txt TOCHANGE.txt"
-
-scipy_fortran_setup() {
- append-ldflags -shared
- FORTRAN="gfortran g77 ifc"
- fortran_pkg_setup
- local fc=
- case ${FORTRANC} in
- gfortran) fc=gnu95 ;;
- g77) fc=gnu ;;
- ifc|ifort)
- if use ia64; then
- fc=intele
- elif use amd64; then
- fc=intelem
- else
- fc=intel
- fi
- ;;
- *) eerror "Unknown fortran compiler: ${FORTRANC}"
- die "scipy_fortran_setup failed" ;;
- esac
- export SCIPY_FCONFIG="config_fc --fcompiler=${fc} --noopt --noarch"
-}
-
-pkg_setup() {
- # scipy automatically detects libraries by default
- export {FFTW,FFTW3,UMFPACK}=None
- use umfpack && unset UMFPACK
- scipy_fortran_setup
-}
-
-src_prepare() {
- epatch "${FILESDIR}"/${PN}-0.7.0_beta1-implicit.patch
- epatch "${FILESDIR}"/${PN}-0.6.0-stsci.patch
- cat > site.cfg <<-EOF
- [DEFAULT]
- library_dirs = /usr/$(get_libdir)
- include_dirs = /usr/include
- [atlas]
- include_dirs = $(pkg-config --cflags-only-I \
- cblas | sed -e 's/^-I//' -e 's/ -I/:/g')
- library_dirs = $(pkg-config --libs-only-L \
- cblas blas lapack| sed -e \
- 's/^-L//' -e 's/ -L/:/g' -e 's/ //g'):/usr/$(get_libdir)
- atlas_libs = $(pkg-config --libs-only-l \
- cblas blas | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
- lapack_libs = $(pkg-config --libs-only-l \
- lapack | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
- [blas_opt]
- include_dirs = $(pkg-config --cflags-only-I \
- cblas | sed -e 's/^-I//' -e 's/ -I/:/g')
- library_dirs = $(pkg-config --libs-only-L \
- cblas blas | sed -e 's/^-L//' -e 's/ -L/:/g' \
- -e 's/ //g'):/usr/$(get_libdir)
- libraries = $(pkg-config --libs-only-l \
- cblas blas | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
- [lapack_opt]
- library_dirs = $(pkg-config --libs-only-L \
- lapack | sed -e 's/^-L//' -e 's/ -L/:/g' \
- -e 's/ //g'):/usr/$(get_libdir)
- libraries = $(pkg-config --libs-only-l \
- lapack | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g')
- EOF
-}
-
-src_compile() {
- # when fortran flags are set, pic is removed.
- [[ -n ${FFLAGS} ]] && FFLAGS="${FFLAGS} -fPIC"
- distutils_src_compile ${SCIPY_FCONFIG}
-}
-
-src_test() {
- "${python}" setup.py install \
- --home="${S}"/test \
- --no-compile \
- ${SCIPY_FCONFIG} || die "install test failed"
- pushd "${S}"/test/lib*/python
- PYTHONPATH=. "${python}" -c "import scipy; scipy.test('full')" 2>&1 | tee test.log
- grep -q ^ERROR test.log && die "test failed"
- popd
- rm -rf test
-}
-
-src_install() {
- distutils_src_install ${SCIPY_FCONFIG}
-}
-
-pkg_postinst() {
- elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
- elog "to your prefered image viewer if you don't like the default one. Ex:"
- elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}
diff --git a/sci-libs/scipy/scipy-0.7.1.ebuild b/sci-libs/scipy/scipy-0.7.1.ebuild
index 5b9bd85ae771..f7a0327551f8 100644
--- a/sci-libs/scipy/scipy-0.7.1.ebuild
+++ b/sci-libs/scipy/scipy-0.7.1.ebuild
@@ -1,20 +1,27 @@
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.7.1.ebuild,v 1.3 2009/09/04 21:31:22 arfrever Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.7.1.ebuild,v 1.4 2009/11/20 21:00:08 bicatali Exp $
EAPI="2"
NEED_PYTHON="2.4"
SUPPORT_PYTHON_ABIS="1"
-inherit eutils distutils flag-o-matic toolchain-funcs
+inherit eutils distutils flag-o-matic toolchain-funcs versionator
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+SP="${PN}-$(get_version_component_range 1-2)"
+
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
+ doc? (
+ http://docs.scipy.org/doc/${SP}.x/${PN}-html.zip -> ${SP}-html.zip
+ http://docs.scipy.org/doc/${SP}.x/${PN}-ref.pdf -> ${SP}-ref.pdf
+ )"
DESCRIPTION="Scientific algorithms library for Python"
HOMEPAGE="http://www.scipy.org/"
+
LICENSE="BSD"
SLOT="0"
-IUSE="umfpack"
+IUSE="doc umfpack"
#IUSE="test umfpack"
KEYWORDS="~amd64 ~ppc ~ppc64 ~x86"
@@ -25,7 +32,8 @@ CDEPEND=">=dev-python/numpy-1.2
DEPEND="${CDEPEND}
dev-util/pkgconfig
- umfpack? ( dev-lang/swig )"
+ umfpack? ( dev-lang/swig )
+ doc? ( app-arch/unzip )"
# test? ( dev-python/nose )
RDEPEND="${CDEPEND}
@@ -49,6 +57,13 @@ pkg_setup() {
export SCIPY_FCONFIG="config_fc --noopt --noarch"
}
+src_unpack() {
+ unpack ${P}.tar.gz
+ if use doc; then
+ unzip -qo "${DISTDIR}"/${SP}-html.zip -d html || die
+ fi
+}
+
src_prepare() {
epatch "${FILESDIR}"/${PN}-0.7.0_beta1-implicit.patch
epatch "${FILESDIR}"/${PN}-0.6.0-stsci.patch
@@ -103,6 +118,11 @@ src_test() {
src_install() {
distutils_src_install ${SCIPY_FCONFIG}
+ if use doc; then
+ insinto /usr/share/doc/${PF}
+ doins -r "${WORKDIR}"/html || die
+ doins "${DISTDIR}"/${SP}*pdf || die
+ fi
}
pkg_postinst() {