diff options
| -rw-r--r-- | sci-biology/prosite/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/prosite/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/prosite/files/digest-prosite-19.13 | 1 | ||||
| -rw-r--r-- | sci-biology/prosite/prosite-19.13.ebuild | 40 | ||||
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/rebase/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/rebase/files/digest-rebase-511 | 1 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-511.ebuild | 41 |
8 files changed, 99 insertions, 2 deletions
diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog index 4528735c4bcb..76f016d0886e 100644 --- a/sci-biology/prosite/ChangeLog +++ b/sci-biology/prosite/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/prosite # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.51 2005/10/18 13:47:17 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.52 2005/11/07 19:51:16 ribosome Exp $ + +*prosite-19.13 (07 Nov 2005) + + 07 Nov 2005; Olivier Fisette <ribosome@gentoo.org> +prosite-19.13.ebuild: + New version. *prosite-19.12 (18 Oct 2005) diff --git a/sci-biology/prosite/Manifest b/sci-biology/prosite/Manifest index dad9d5efd45e..bfaf3e28047e 100644 --- a/sci-biology/prosite/Manifest +++ b/sci-biology/prosite/Manifest @@ -1,4 +1,5 @@ MD5 324f25c7e64f0b16c397bc5b21a5991a prosite-19.11.ebuild 1091 +MD5 851c32a05d28c8253c27bd0ccc80dabc prosite-19.13.ebuild 1246 MD5 9431707b2855909119752ded034ad2db prosite-19.10.ebuild 1087 MD5 8fa2b3fde216b5b0abdc36962cf355fe ChangeLog 8857 MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810 @@ -6,3 +7,4 @@ MD5 851c32a05d28c8253c27bd0ccc80dabc prosite-19.12.ebuild 1246 MD5 10437130b20baaac5ed4b4f6d3b4c8b6 files/digest-prosite-19.10 67 MD5 76de17f75bb2711010384038f2f0a2bc files/digest-prosite-19.11 67 MD5 f910141ce9f0c61b5b84c488164a8751 files/digest-prosite-19.12 67 +MD5 0d50ead2db740fdbfad278fa81bfbca4 files/digest-prosite-19.13 67 diff --git a/sci-biology/prosite/files/digest-prosite-19.13 b/sci-biology/prosite/files/digest-prosite-19.13 new file mode 100644 index 000000000000..1007908aef07 --- /dev/null +++ b/sci-biology/prosite/files/digest-prosite-19.13 @@ -0,0 +1 @@ +MD5 64b14fe3405a51138080be3423a5b4ac prosite-19.13.tar.bz2 2659264 diff --git a/sci-biology/prosite/prosite-19.13.ebuild b/sci-biology/prosite/prosite-19.13.ebuild new file mode 100644 index 000000000000..84fba3775008 --- /dev/null +++ b/sci-biology/prosite/prosite-19.13.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-19.13.ebuild,v 1.1 2005/11/07 19:51:16 ribosome Exp $ + +DESCRIPTION="A protein families and domains database" +LICENSE="swiss-prot" +HOMEPAGE="http://ca.expasy.org/prosite" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )" + +src_compile() { + if use emboss; then + mkdir PROSITE + echo + einfo "Indexing PROSITE for usage with EMBOSS." + EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \ + "Indexing PROSITE failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins ${PN}.{doc,dat,lis} || die "Installing raw database failed." + fi + dodoc *.txt || die "Documentation installation failed." + dohtml *.htm || die "HTML documentation installation failed." + if use emboss; then + insinto /usr/share/EMBOSS/data/PROSITE + doins PROSITE/* || die "Installing EMBOSS data files failed." + fi +} diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index 31c52fe589d6..eb77c3af423b 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.39 2005/10/18 01:13:07 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.40 2005/11/07 19:53:36 ribosome Exp $ + +*rebase-511 (07 Nov 2005) + + 07 Nov 2005; Olivier Fisette <ribosome@gentoo.org> +rebase-511.ebuild: + New version. 18 Oct 2005; Olivier Fisette <ribosome@gentoo.org> rebase-510.ebuild: Ebuild clean-up. diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest index 0ecc77d8e62c..a73db1f03ae0 100644 --- a/sci-biology/rebase/Manifest +++ b/sci-biology/rebase/Manifest @@ -1,6 +1,8 @@ MD5 8e3a296c79e6b9747f0bc4ebed679afc rebase-510.ebuild 1202 +MD5 8e3a296c79e6b9747f0bc4ebed679afc rebase-511.ebuild 1202 MD5 69b1a343f30e72fad61432c2246b4c28 rebase-509.ebuild 1099 MD5 b1f1c9744036cdd7d756a74a110791df ChangeLog 5954 MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900 MD5 8b72021e3a53e0c9ab7acaf2d016637e files/digest-rebase-509 63 MD5 c9253e81b3d46b0f4226ff56b61f4313 files/digest-rebase-510 63 +MD5 de0923d154ca7a32f45ee6bb9d3a40c4 files/digest-rebase-511 63 diff --git a/sci-biology/rebase/files/digest-rebase-511 b/sci-biology/rebase/files/digest-rebase-511 new file mode 100644 index 000000000000..d8851851fd15 --- /dev/null +++ b/sci-biology/rebase/files/digest-rebase-511 @@ -0,0 +1 @@ +MD5 6b53178dba38317b0173943213e745b2 rebase-511.tar.bz2 181327 diff --git a/sci-biology/rebase/rebase-511.ebuild b/sci-biology/rebase/rebase-511.ebuild new file mode 100644 index 000000000000..b9f47140eb25 --- /dev/null +++ b/sci-biology/rebase/rebase-511.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-511.ebuild,v 1.1 2005/11/07 19:53:36 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64" + +DEPEND="emboss? ( sci-biology/emboss )" + +src_compile() { + if use emboss; then + echo + einfo "Indexing ${PN} for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} || die "Indexing ${PN} failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/{embossre.enz,embossre.ref,embossre.sup} || die \ + "Failed to install EMBOSS data files." + fi +} |