diff options
Diffstat (limited to 'sci-biology/allpathslg')
| -rw-r--r-- | sci-biology/allpathslg/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/allpathslg/Manifest | 26 | ||||
| -rw-r--r-- | sci-biology/allpathslg/allpathslg-42337.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/allpathslg/allpathslg-47093.ebuild | 36 |
4 files changed, 64 insertions, 10 deletions
diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog index 912c1f0d5ab4..1c91bac4386a 100644 --- a/sci-biology/allpathslg/ChangeLog +++ b/sci-biology/allpathslg/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/allpathslg # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.14 2013/03/11 14:36:10 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.15 2013/07/17 08:33:08 jlec Exp $ + +*allpathslg-47093 (17 Jul 2013) + + 17 Jul 2013; Justin Lecher <jlec@gentoo.org> allpathslg-42337.ebuild, + +allpathslg-47093.ebuild: + Version Bump 11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml: Drop Andrey as maintainer so that bugs get assigned to sci-biology directly diff --git a/sci-biology/allpathslg/Manifest b/sci-biology/allpathslg/Manifest index 148c59eadd1c..a6a7b7d22633 100644 --- a/sci-biology/allpathslg/Manifest +++ b/sci-biology/allpathslg/Manifest @@ -1,14 +1,26 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA256 +Hash: SHA512 DIST allpathslg-42337.tar.gz 2739498 SHA256 a2c8f64f6ba1705b2331ca07761d189183c6745f8717ffc67ee98e9e3ca3dba6 SHA512 7595fbe14a5029578b57d16f781cbb2a0f0ad6b1af2dd770e2274f8fe2e11d0013fdff12cc85c1be748e769ffb23b7d5fe30920feef38e0e8b947d05b8bda31c WHIRLPOOL 79bda55d49877641eb55630950472a06d8f25db467dbfecde8b4d04c3ce16c071d32dd312fa9a0f72723bf4caa8f9b1d0346acf438b9671b4bed2c0672c788b9 -EBUILD allpathslg-42337.ebuild 899 SHA256 77921d9efe83fd4fd1405bbc7000364a8ddee96a8cae8e2104b3594e015a5dd5 SHA512 48fa95acea6859929b5cb19e538b96bd92616d8ee12b3dc894a15f02946fbbf0dac30f8d6686a0b070153e69ee1e5ac87868358cc5d748346bdbcf66ba5be720 WHIRLPOOL 2653a09f16ba2d4101bfc464471599876fa8b91047c5fb67b84d2e3e8cd39c0d07e88cc9f0dd605112ae8784d98e7f2eb8bdaea3b5159144c8dbf1273e66bd3b -MISC ChangeLog 2274 SHA256 8820168401b2b28cf15ed77d411ba2e53fbce54f36967e54db65c2a12519c49b SHA512 e2cdd7b184ee9d3426e510d1518d4cba2f00f1fb7b1c03e9dc1eafc2f989227d47785cb688a548b81c3c43fe2c5eca5d3104cfcfa208c5858ecf794e37c49388 WHIRLPOOL df7cb8cbfa33da5534c901a983c57af4d7ff25fda5753f749adf2e915fc0fe73bd4490fd45eebe9c73dc69ec2ae6f8423bfe18c98817d5220da470c76af43517 +DIST allpathslg-47093.tar.gz 3057279 SHA256 493e21ae727250ea632b73b61545c32de2d8fb31e6a92605393ebb4af251f828 SHA512 499d23de52cad666fac663eb4a7d770b2129c4f9622f6c808ce30283429b6f67fb343f8712b07c7cb062c429117a0855da960ffc1d2ffb4e7ec2f544ba5a6314 WHIRLPOOL a3bc58dc140be3cddbd44c7035e628c4425bf86bc38592004df21d4dc91958ced9f08d667b43c15c214e53e3098805f368a856e66e5c2049b0e03d043b098ebc +EBUILD allpathslg-42337.ebuild 905 SHA256 0c509764bf385af7d187d88dd9707cb78a7c2ea98aed220ee1f8f1ae2f50e199 SHA512 42588a75f4f4ec15bb1a1b30d6c20c501f5f3c956f33588fcc46e9b9c1de010be600aedd06da651875c4a0690b7d23c666d132cffebb8cf27b0ec6a172884d51 WHIRLPOOL b02e3b74e0982d70949361a6685a2e71929a1e81fa8375892f570f6988bc110804dbf21aef7babfae3c7ce108f5c6d91258569c8bd95a2ffe8d3ad9c55b4117e +EBUILD allpathslg-47093.ebuild 915 SHA256 0ab6dd738d0842a2f18c27f96801623981a56afb1f0abb732ac5a4c3d2364be9 SHA512 9ad4c4d38e67e2dd4b1f3d561a836269c0dfe882915cd12129f73443d03c4dcec1ada2116f407b6baebda063c4e0d03b8c406940b4eeadc129ac3277014aec33 WHIRLPOOL 96b5624f835cd4a59965ee2157d98b634e57d7273506869014039f55e887575494df242aaef0790b2fceabf40e9f218c1341cf1dbb3b9dcec1a1e5722d7bf41c +MISC ChangeLog 2423 SHA256 d7ba55a608cc0ef0a2d1e6e52f7d42da563bc6b2d3efe17ca48b4ae9d0215226 SHA512 639f1ffe3f419164885e595193fc6048f84d167368817320835c936049587fd4308a1504bb421aa7b992ce259dda0e0c1a73d827747728c32a3c7666f5d8376f WHIRLPOOL 79b6462f5c5f9166d86bccf2e5fcd8c6e29323f3b7692627c009081c7fa42ebbc429e6af1c7ddd237f7daae84067d931f1d30a1531198cc2f6388d210eab1fa8 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.19 (GNU/Linux) +Version: GnuPG v2.0.20 (GNU/Linux) -iEYEAREIAAYFAlE969sACgkQgAnW8HDreRYedACbBVvr7XSVP8QbWK+bYwQEE88L -764AnjGdh2UJgKlG3wo0J3o8QBX6ZMoB -=pLiA +iQIcBAEBCgAGBQJR5lbFAAoJELnU8jG9FVirz+sP/j6e8WAzS88wBpgtRLbo/nQV +RgOoNMFnv5ipNE463GPyt7jzCn9/9kAFB8niin0+4GUpumcDLE3nnt51QpFnJF+F +nVzZl8MPerXVUJDPInh9SW3Fq5x6glB8prJhmICIbD+HN2F104TPVudl/UXcz0Nx +cVL4DO1oc4TZWnXx3CjPDByV/hzhM3nV1BZ6gsP+0VOQK/cdFUzDZB7bvqlWO5Cc +VRVngxjGuZNVUExquwwIyeILlCxMu9Psq01Oa+Nr2uxSC2kqKe0ntrlRKMeKz80e +JOzvEKedHypuyJPqah+9MYgNsw/le6X786eDsMGiLNnKw/Z09GZEPwIWFhoilkPe +05H3uaG+GqFRqJSn7UQBkoNrj/rx/gMvqlm4Vbi1DoNK/863xrKqR+dpHp+nuiDz 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SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_ LICENSE="MIT" SLOT="0" IUSE="" -KEYWORDS="amd64" +KEYWORDS="amd64 ~x86" DEPEND=" dev-libs/boost diff --git a/sci-biology/allpathslg/allpathslg-47093.ebuild b/sci-biology/allpathslg/allpathslg-47093.ebuild new file mode 100644 index 000000000000..5686eb41e407 --- /dev/null +++ b/sci-biology/allpathslg/allpathslg-47093.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-47093.ebuild,v 1.1 2013/07/17 08:33:08 jlec Exp $ + +EAPI=5 + +inherit autotools flag-o-matic + +DESCRIPTION="De novo assembly of whole-genome shotgun microreads" +HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" +SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND=" + dev-libs/boost + !sci-biology/allpaths + sci-biology/vaal" +RDEPEND="" + +src_prepare() { + sed -i 's/-ggdb//' configure.ac || die + eautoreconf +} + +src_install() { + default +# einstall || die + # Provided by sci-biology/vaal + for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do + rm "${D}/usr/bin/$i" || die + done +} |