diff options
Diffstat (limited to 'sci-biology/cutg')
| -rw-r--r-- | sci-biology/cutg/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/cutg/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/cutg/cutg-147-r1.ebuild | 46 | ||||
| -rw-r--r-- | sci-biology/cutg/files/digest-cutg-147-r1 | 1 |
4 files changed, 56 insertions, 2 deletions
diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog index 1c3ef6873eb6..1a5d5ab40354 100644 --- a/sci-biology/cutg/ChangeLog +++ b/sci-biology/cutg/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/cutg # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.17 2005/06/19 00:38:11 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.18 2005/06/25 21:32:58 ribosome Exp $ + +*cutg-147-r1 (25 Jun 2005) + + 25 Jun 2005; Olivier Fisette <ribosome@gentoo.org> +cutg-147-r1.ebuild: + Trying to fix some ppc-macos bug reported in #96819. *cutg-147 (19 Jun 2005) diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest index 3aaf8f3175f0..de9ef677eb4c 100644 --- a/sci-biology/cutg/Manifest +++ b/sci-biology/cutg/Manifest @@ -1,8 +1,10 @@ MD5 218011b0693086b65af18f803aa313f9 cutg-146.ebuild 1169 +MD5 76196216bdb30f6ca479b1d443879df4 cutg-147-r1.ebuild 1288 MD5 954d02893953b8f9c904299f892979ce cutg-145.ebuild 1169 MD5 1d04a7e8db0c98196fc181a2474ade73 cutg-147.ebuild 1173 -MD5 ffa65a7d25f4d04a1fd57110ea330d34 ChangeLog 2809 +MD5 e2383720e9d2dac2db24c426c4a29eb1 ChangeLog 2967 MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594 +MD5 83fa71b1c66f960bfccd8e17201c09de files/digest-cutg-147-r1 63 MD5 9c6a185b26bf5647beb885860099151f files/digest-cutg-145 63 MD5 5de9ff1df8fe00fdf41b5b7c0db04fba files/digest-cutg-146 63 MD5 83fa71b1c66f960bfccd8e17201c09de files/digest-cutg-147 63 diff --git a/sci-biology/cutg/cutg-147-r1.ebuild b/sci-biology/cutg/cutg-147-r1.ebuild new file mode 100644 index 000000000000..7597288688a0 --- /dev/null +++ b/sci-biology/cutg/cutg-147-r1.ebuild @@ -0,0 +1,46 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-147-r1.ebuild,v 1.1 2005/06/25 21:32:58 ribosome Exp $ + +DESCRIPTION="Codon usage tables calculated from GenBank" +HOMEPAGE="http://www.kazusa.or.jp/codon/" +SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="~ppc ~ppc-macos ~ppc64 ~x86" +IUSE="emboss minimal" +# Minimal build keeps only the indexed files (if applicable) and the documentation. +# The non-indexed database is not installed. + +DEPEND="emboss? ( sci-biology/emboss )" + +S=${WORKDIR} + +src_compile() { + if use emboss; then + mkdir CODONS + echo + einfo "Indexing CUTG for usage with EMBOSS." + EMBOSS_DATA="." cutgextract -auto -directory ${S} || die \ + "Indexing CUTG failed." + echo + fi +} + +src_install() { + if ! use minimal; then + mkdir -p ${D}/usr/share/${PN} + mv *.codon *.spsum ${D}usr/share/${PN} || die \ + "Installing raw CUTG database failed." + fi + dodoc README + if use emboss; then + mkdir -p ${D}usr/share/EMBOSS/data/CODONS + cd CODONS + for file in *; do + mv ${file} ${D}usr/share/EMBOSS/data/CODONS || die \ + "Installing the EMBOSS-indexed database failed." + done + fi +} diff --git a/sci-biology/cutg/files/digest-cutg-147-r1 b/sci-biology/cutg/files/digest-cutg-147-r1 new file mode 100644 index 000000000000..666d83858811 --- /dev/null +++ b/sci-biology/cutg/files/digest-cutg-147-r1 @@ -0,0 +1 @@ +MD5 b2a7fd01f46cb72ad31b0129ed2dd54d CUTG.147.tar.gz 142239582 |