diff options
Diffstat (limited to 'sci-libs/ccp4-libs/ccp4-libs-6.1.3-r2.ebuild')
-rw-r--r-- | sci-libs/ccp4-libs/ccp4-libs-6.1.3-r2.ebuild | 220 |
1 files changed, 0 insertions, 220 deletions
diff --git a/sci-libs/ccp4-libs/ccp4-libs-6.1.3-r2.ebuild b/sci-libs/ccp4-libs/ccp4-libs-6.1.3-r2.ebuild deleted file mode 100644 index 642627419517..000000000000 --- a/sci-libs/ccp4-libs/ccp4-libs-6.1.3-r2.ebuild +++ /dev/null @@ -1,220 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-libs/ccp4-libs/ccp4-libs-6.1.3-r2.ebuild,v 1.1 2010/05/22 10:04:27 jlec Exp $ - -EAPI="3" - -inherit fortran eutils gnuconfig toolchain-funcs - -FORTRAN="g77 gfortran ifc" - -SRC="ftp://ftp.ccp4.ac.uk/ccp4" - -#UPDATE="04_03_09" -#PATCHDATE="090511" - -MY_P="${P/-libs}" - -PATCH_TOT="0" -# Here's a little scriptlet to generate this list from the provided -# index.patches file -# -# i=1; while read -a line; do [[ ${line//#} != ${line} ]] && continue; -# echo "PATCH${i}=( ${line[1]}"; echo "${line[0]} )"; (( i++ )); done < -# index.patches -#PATCH1=( src/topp_ -#topp.f-r1.16.2.5-r1.16.2.6.diff ) -#PATCH2=( . -#configure-r1.372.2.18-r1.372.2.19.diff ) - -DESCRIPTION="Protein X-ray crystallography toolkit" -HOMEPAGE="http://www.ccp4.ac.uk/" -SRC_URI="${SRC}/${PV}/${MY_P}-core-src.tar.gz" -# patch tarball from upstream - [[ -n ${UPDATE} ]] && SRC_URI="${SRC_URI} ${SRC}/${PV}/updates/${P}-src-patch-${UPDATE}.tar.gz" -# patches created by us - [[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} http://dev.gentooexperimental.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2" - -for i in $(seq $PATCH_TOT); do - NAME="PATCH${i}[1]" - SRC_URI="${SRC_URI} - ${SRC}/${PV}/patches/${!NAME}" -done - -LICENSE="ccp4" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND=" - media-libs/jpeg:0 - app-shells/tcsh - !<sci-chemistry/ccp4-6.1.3 - sci-libs/cbflib - =sci-libs/fftw-2* - sci-libs/mmdb - sci-libs/monomer-db - virtual/lapack - virtual/blas" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - einfo "Applying upstream patches ..." - for patch in $(seq $PATCH_TOT); do - base="PATCH${patch}" - dir=$(eval echo \${${base}[0]}) - p=$(eval echo \${${base}[1]}) - pushd "${dir}" >& /dev/null - ccp_patch "${DISTDIR}/${p}" - popd >& /dev/null - done - einfo "Done." - echo - - [[ -n ${PATCHDATE} ]] && epatch "${WORKDIR}"/${PV}-${PATCHDATE}-updates.patch - - einfo "Applying Gentoo patches ..." - # it tries to create libdir, bindir etc on live system in configure - ccp_patch "${FILESDIR}"/${PV}-dont-make-dirs-in-configure.patch - - # gerror_ gets defined twice on ppc if you're using gfortran/g95 - ccp_patch "${FILESDIR}"/6.0.2-ppc-double-define-gerror.patch - - # make creation of libccif.so smooth - ccp_patch "${FILESDIR}"/${PV}-ccif-shared.patch - - # lets try to build libmmdb seperatly - ccp_patch "${FILESDIR}"/${PV}-dont-build-mmdb.patch - - # unbundle libjpeg and cbflib - ccp_patch "${FILESDIR}"/${PV}-unbundle-libs.patch - - einfo "Done." # done applying Gentoo patches - echo - - sed "s:/usr:${EPREFIX}/usr:g" -i configure || die - - gnuconfig_update -} - -src_configure() { - - rm -rf lib/DiffractionImage/{jpg,CBFlib} || die - - # Build system is broken if we set LDFLAGS - userldflags="${LDFLAGS}" - export SHARED_LIB_FLAGS="${LDFLAGS}" - unset LDFLAGS - - # GENTOO_OSNAME can be one of: - # irix irix64 sunos sunos64 aix hpux osf1 linux freebsd - # linux_compaq_compilers linux_intel_compilers generic Darwin - # ia64_linux_intel Darwin_ibm_compilers linux_ibm_compilers - if [[ "${FORTRANC}" = "ifc" ]]; then - if use ia64; then - GENTOO_OSNAME="ia64_linux_intel" - else - # Should be valid for x86, maybe amd64 - GENTOO_OSNAME="linux_intel_compilers" - fi - else - # Should be valid for x86 and amd64, at least - GENTOO_OSNAME="linux" - fi - - # Sets up env - ln -s \ - ccp4.setup-bash \ - "${S}"/include/ccp4.setup - - # We agree to the license by emerging this, set in LICENSE - sed -i \ - -e "s~^\(^agreed=\).*~\1yes~g" \ - "${S}"/configure - - # Fix up variables -- need to reset CCP4_MASTER at install-time - sed -i \ - -e "s~^\(setenv CCP4_MASTER.*\)/.*~\1"${WORKDIR}"~g" \ - -e "s~^\(setenv CCP4I_TCLTK.*\)/usr/local/bin~\1${EPREFIX}/usr/bin~g" \ - "${S}"/include/ccp4.setup* - - # Set up variables for build - source "${S}"/include/ccp4.setup - - export CC=$(tc-getCC) - export CXX=$(tc-getCXX) - export COPTIM=${CFLAGS} - export CXXOPTIM=${CXXFLAGS} - # Default to -O2 if FFLAGS is unset - export FC=${FORTRANC} - export FOPTIM=${FFLAGS:- -O2} -# export CCP4_SCR="${T}" - - # Fix linking -# $(tc-getCC) ${userldflags} -shared -Wl,-soname,libmmdb.so -o libmmdb.so \${MMDBOBJS} $(gcc-config -L | awk -F: '{for(i=1; i<=NF; i++) printf " -L%s", $i}') -lm -lstdc++ && \ - export SHARE_LIB="\ - $(tc-getCC) ${userldflags} -shared -Wl,-soname,libccp4c.so -o libccp4c.so \${CORELIBOBJS} \${CGENERALOBJS} \${CUCOBJS} \${CMTZOBJS} \${CMAPOBJS} \${CSYMOBJS} -L.. -lccif $(gcc-config -L | awk -F: '{for(i=1; i<=NF; i++) printf " -L%s", $i}') -lm && \ - ${FORTRANC} ${userldflags} -shared -Wl,-soname,libccp4f.so -o libccp4f.so \${FORTRANLOBJS} \${FINTERFACEOBJS} -L.. -lccif -L. -lccp4c -lmmdb $(gcc-config -L | awk -F: '{for(i=1; i<=NF; i++) printf " -L%s", $i}') -lstdc++ -lgfortran -lm" - - # Can't use econf, configure rejects unknown options like --prefix - ./configure \ - --onlylibs \ - --with-shared-libs \ - --with-fftw="${EPREFIX}"/usr \ - --with-warnings \ - --disable-cctbx \ - --disable-clipper \ - --tmpdir="${TMPDIR}" \ - ${GENTOO_OSNAME} || die "econf failed" -} - -src_compile() { - emake -j1 onlylib || die "emake failed" -} - -src_install() { - # Set up variables for build - source "${S}"/include/ccp4.setup - - einstall || die "install failed" - - # Libs - for file in "${S}"/lib/*; do - if [[ -d ${file} ]]; then - continue - elif [[ -x ${file} ]]; then - dolib.so ${file} || die - else - insinto /usr/$(get_libdir) - doins ${file} || die - fi - done - - # Bins - exeinto /usr/libexec/ccp4/bin/ - doexe bin/{automask,diff2jpeg,diffdump,printpeaks,superpose} || die - - # Fix libdir in all *.la files - sed -i \ - -e "s:^\(libdir=\).*:\1\'${EPREFIX}/usr/$(get_libdir)\':g" \ - "${ED}"/usr/$(get_libdir)/*.la || die - - # Data - insinto /usr/share/ccp4/data/ - doins -r "${S}"/lib/data/{*.PARM,*.prt,*.lib,*.dic,*.idl,*.cif,*.resource,*.york,*.hist,fraglib,reference_structures} || die - dodoc "${S}"/lib/data/*.doc - newdoc "${S}"/lib/data/README DATA-README - - # Include files - insinto /usr/include - for i in ccp4; do - doins -r "${S}"/include/${i} || die - done -} - -# Epatch wrapper for bulk patching -ccp_patch() { - EPATCH_SINGLE_MSG=" ${1##*/} ..." epatch ${1} -} |