blob: 3dd596d3185b4aff1a9cf2989206e5c67b5820f2 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
|
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-7.54.ebuild,v 1.1 2009/03/01 17:15:20 patrick Exp $
inherit toolchain-funcs flag-o-matic
DESCRIPTION="A multiple sequence alignment package"
LICENSE="GPL-2"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~ppc ~x86"
DEPEND="sci-biology/clustalw"
RDEPEND="${DEPEND}"
TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
S="${TCDIR}/t_coffee_source"
die_compile() {
echo
eerror "If you experience an internal compiler error (consult the above"
eerror "messages), try compiling t-coffee using very modest compiler flags."
eerror "See bug #114745 on the Gentoo Bugzilla for more details."
die "Compilation failed"
}
src_compile() {
[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile
}
src_install() {
dobin t_coffee || die "Failed to install program."
insinto /usr/share/${PN}/lib/html
doins "${TCDIR}"/html/* \
|| die "Failed to install Web interface files."
cd "${TCDIR}"/doc
dodoc aln_compare.doc.txt seq_reformat.doc.txt \
t_coffee_technical.txt t_coffee_tutorial.txt \
|| die "Failed to install text documentation."
dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
|| die "Failed to install HTML documentation."
insinto /usr/share/doc/${PF}
doins t_coffee_technical.doc t_coffee_tutorial.doc \
|| die "Failed to install DOC documentation."
insinto /usr/share/${PN}/example
doins "${TCDIR}"/example/* \
|| die "Failed to install example files."
}
|
GitWeb
