blob: fc25192f54b6237c0dad24d122ab94d5b7aacfac (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
|
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2-r1.ebuild,v 1.1 2011/10/07 19:23:04 jlec Exp $
EAPI=3
PYTHON_DEPEND="2"
PYTHON_USE_WITH="tk"
inherit base eutils python versionator
MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
DESCRIPTION="Automated NOE assignment and NMR structure calculation"
HOMEPAGE="http://aria.pasteur.fr/"
SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2.tar.gz"
SLOT="0"
LICENSE="cns"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
RDEPEND="
sci-chemistry/clashlist
sci-chemistry/procheck
sci-libs/clashscore-db
dev-python/numpy
dev-python/matplotlib[tk]
>=sci-chemistry/cns-1.2.1-r7[aria,openmp]
>=dev-lang/tk-8.3
>=sci-chemistry/ccpn-2.0.5
>=dev-tcltk/tix-8.1.4"
DEPEND="${RDEPEND}"
RESTRICT="fetch"
S="${WORKDIR}/${MY_P}"
pkg_nofetch(){
einfo "Go to ${HOMEPAGE}, download ${A}"
einfo "and place it in ${DISTDIR}"
}
src_prepare() {
epatch "${FILESDIR}"/${P}-through-space.patch
}
src_test(){
export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
$(PYTHON) check.py || die
}
src_install(){
insinto "$(python_get_sitedir)/${PN}"
doins -r src aria2.py || die "failed to install ${PN}"
insinto "$(python_get_sitedir)/${PN}"/cns
doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
if use examples; then
insinto /usr/share/${P}/
doins -r examples || die
fi
# ENV
cat >> "${T}"/20aria <<- EOF
ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
EOF
doenvd "${T}"/20aria
# Launch Wrapper
cat >> "${T}"/aria <<- EOF
#!/bin/sh
export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
EOF
dobin "${T}"/aria || die "failed to install wrapper"
dosym aria /usr/bin/aria2
dodoc README || die
}
pkg_postinst() {
python_mod_optimize ${PN}
}
pkg_postrm() {
python_mod_cleanup ${PN}
}
|
GitWeb