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authorRepository mirror & CI <repomirrorci@gentoo.org>2024-10-18 06:20:40 +0000
committerRepository mirror & CI <repomirrorci@gentoo.org>2024-10-18 06:20:40 +0000
commit64a45c1dff932597cd8e6b74ccf49000da055be1 (patch)
treeb6467cfdfd65d88db357fdef1f7f9e1acd82d932
parentMerge updates from master (diff)
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2024-10-18 06:20:40 UTC
-rw-r--r--metadata/md5-cache/dev-ml/ppx_blob-0.9.016
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2023.5 (renamed from metadata/md5-cache/sci-chemistry/gromacs-2023.4)4
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2024.216
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2024.3 (renamed from metadata/md5-cache/sci-chemistry/gromacs-2024.1)4
-rw-r--r--metadata/pkg_desc_index4
-rw-r--r--metadata/timestamp.chk2
6 files changed, 23 insertions, 23 deletions
diff --git a/metadata/md5-cache/dev-ml/ppx_blob-0.9.0 b/metadata/md5-cache/dev-ml/ppx_blob-0.9.0
new file mode 100644
index 000000000000..3f2168ba941a
--- /dev/null
+++ b/metadata/md5-cache/dev-ml/ppx_blob-0.9.0
@@ -0,0 +1,16 @@
+BDEPEND=test? ( dev-ml/alcotest ) dev-lang/ocaml dev-ml/dune
+DEFINED_PHASES=compile install test
+DEPEND=dev-ml/ppxlib:=[ocamlopt?] >=dev-lang/ocaml-4:=[ocamlopt?] dev-ml/dune:=
+DESCRIPTION=Include a file as a string at compile time
+EAPI=8
+HOMEPAGE=https://github.com/johnwhitington/ppx_blob
+INHERIT=dune
+IUSE=+ocamlopt test
+KEYWORDS=~amd64 ~x86
+LICENSE=Unlicense
+RDEPEND=dev-ml/ppxlib:=[ocamlopt?] >=dev-lang/ocaml-4:=[ocamlopt?] dev-ml/dune:=
+RESTRICT=!test? ( test )
+SLOT=0
+SRC_URI=https://github.com/johnwhitington/ppx_blob/releases/download/0.9.0/ppx_blob-0.9.0.tbz
+_eclasses_=edo 367e103a74bf77e6a8da7894d999fa3c multiprocessing 1e32df7deee68372153dca65f4a7c21f dune 21c2970666b517829dc7b963ca1f4a4a
+_md5_=79f9f841e6570ad3bdab3b7fe84a5d97
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2023.4 b/metadata/md5-cache/sci-chemistry/gromacs-2023.5
index f58f06cc3a34..93518507c8ad 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2023.4
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2023.5
@@ -10,7 +10,7 @@ LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD )
RDEPEND=blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-11:=[profiler] ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0= ) hwloc? ( sys-apps/hwloc:= ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi[cxx] ) sci-libs/lmfit:= >=dev-cpp/muParser-2.3:= python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 )
REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cuda? ( single-precision ) opencl? ( single-precision ) cuda? ( !opencl ) clang-cuda? ( clang cuda ) mkl? ( !blas !fftw !lapack ) ^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 )
RESTRICT=!test? ( test )
-SLOT=0/2023.4
-SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2023.4.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2023.4.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2023.4.tar.gz )
+SLOT=0/2023.5
+SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2023.5.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2023.5.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2023.5.tar.gz )
_eclasses_=toolchain-funcs d3d42b22a610ce81c267b644bcec9b87 multilib b2a329026f2e404e9e371097dda47f96 bash-completion-r1 767861f3744f589ee5291c1698b1c082 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 cuda 283d0f298f6c196c755a0f8d50daca85 out-of-source-utils dbf9e34ee8964084651e25907fa8f52c multibuild 4650a65187015567b4e041bb9bfdb364 python-utils-r1 2fee95c11e5f883024588d4837db6802 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 distutils-r1 bcc61b7696f06db333c2f2db1606ed76 readme.gentoo-r1 b045f3acf546393ab6b3170781875358
_md5_=2913fa98274b71a930f88d0aaee5c3fd
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2024.2 b/metadata/md5-cache/sci-chemistry/gromacs-2024.2
deleted file mode 100644
index 55cc65211fd6..000000000000
--- a/metadata/md5-cache/sci-chemistry/gromacs-2024.2
+++ /dev/null
@@ -1,16 +0,0 @@
-BDEPEND=blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-11:=[profiler] ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0= ) hwloc? ( sys-apps/hwloc:= ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi[cxx] ) sci-libs/lmfit:= >=dev-cpp/muParser-2.3:= python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 ) virtual/pkgconfig clang? ( >=sys-devel/clang-6:* ) build-manual? ( app-text/doxygen python_single_target_python3_10? ( dev-python/sphinx[python_targets_python3_10(-)] dev-python/sphinx-copybutton[python_targets_python3_10(-)] dev-python/sphinx-inline-tabs[python_targets_python3_10(-)] dev-python/sphinx-argparse[python_targets_python3_10(-)] dev-python/sphinxcontrib-autoprogram[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/sphinx[python_targets_python3_11(-)] dev-python/sphinx-copybutton[python_targets_python3_11(-)] dev-python/sphinx-inline-tabs[python_targets_python3_11(-)] dev-python/sphinx-argparse[python_targets_python3_11(-)] dev-python/sphinxcontrib-autoprogram[python_targets_python3_11(-)] ) python_single_target_python3_12? ( dev-python/sphinx[python_targets_python3_12(-)] dev-python/sphinx-copybutton[python_targets_python3_12(-)] dev-python/sphinx-inline-tabs[python_targets_python3_12(-)] dev-python/sphinx-argparse[python_targets_python3_12(-)] dev-python/sphinxcontrib-autoprogram[python_targets_python3_12(-)] ) media-gfx/mscgen media-gfx/graphviz dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) app-alternatives/ninja >=dev-build/cmake-3.20.5
-DEFINED_PHASES=compile configure install postinst prepare pretend setup test unpack
-DESCRIPTION=The ultimate molecular dynamics simulation package
-EAPI=8
-HOMEPAGE=https://www.gromacs.org/
-INHERIT=bash-completion-r1 cmake cuda distutils-r1 flag-o-matic readme.gentoo-r1 toolchain-funcs xdg-utils
-IUSE=blas clang clang-cuda cuda +custom-cflags +doc build-manual double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_avx512f cpu_flags_arm_neon python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12
-KEYWORDS=~amd64 -arm ~arm64 ~riscv ~x86 ~amd64-linux ~x86-linux ~x64-macos
-LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
-RDEPEND=blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-11:=[profiler] ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0= ) hwloc? ( sys-apps/hwloc:= ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi[cxx] ) sci-libs/lmfit:= >=dev-cpp/muParser-2.3:= python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 )
-REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cuda? ( single-precision ) opencl? ( single-precision ) cuda? ( !opencl ) clang-cuda? ( clang cuda ) mkl? ( !blas !fftw !lapack ) ^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 )
-RESTRICT=!test? ( test )
-SLOT=0/2024.2
-SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2024.2.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2024.2.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2024.2.tar.gz )
-_eclasses_=toolchain-funcs d3d42b22a610ce81c267b644bcec9b87 multilib b2a329026f2e404e9e371097dda47f96 bash-completion-r1 767861f3744f589ee5291c1698b1c082 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 cuda 283d0f298f6c196c755a0f8d50daca85 out-of-source-utils dbf9e34ee8964084651e25907fa8f52c multibuild 4650a65187015567b4e041bb9bfdb364 python-utils-r1 2fee95c11e5f883024588d4837db6802 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 distutils-r1 bcc61b7696f06db333c2f2db1606ed76 readme.gentoo-r1 b045f3acf546393ab6b3170781875358
-_md5_=bc9440ee2c526e412faba6dd25dd9650
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2024.1 b/metadata/md5-cache/sci-chemistry/gromacs-2024.3
index b1c86f6e1de1..f312781a6c71 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2024.1
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2024.3
@@ -10,7 +10,7 @@ LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD )
RDEPEND=blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-11:=[profiler] ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0= ) hwloc? ( sys-apps/hwloc:= ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi[cxx] ) sci-libs/lmfit:= >=dev-cpp/muParser-2.3:= python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 )
REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cuda? ( single-precision ) opencl? ( single-precision ) cuda? ( !opencl ) clang-cuda? ( clang cuda ) mkl? ( !blas !fftw !lapack ) ^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 )
RESTRICT=!test? ( test )
-SLOT=0/2024.1
-SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2024.1.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2024.1.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2024.1.tar.gz )
+SLOT=0/2024.3
+SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2024.3.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2024.3.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2024.3.tar.gz )
_eclasses_=toolchain-funcs d3d42b22a610ce81c267b644bcec9b87 multilib b2a329026f2e404e9e371097dda47f96 bash-completion-r1 767861f3744f589ee5291c1698b1c082 flag-o-matic f14aba975c94ccaa9f357a27e3b17ffe multiprocessing 1e32df7deee68372153dca65f4a7c21f ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils 42869b3c8d86a70ef3cf75165a395e09 cmake 10a50dfaf728b802fcfd37f8d0da9056 cuda 283d0f298f6c196c755a0f8d50daca85 out-of-source-utils dbf9e34ee8964084651e25907fa8f52c multibuild 4650a65187015567b4e041bb9bfdb364 python-utils-r1 2fee95c11e5f883024588d4837db6802 python-single-r1 47d8ac9be330c9366112b78fd4f8ce57 distutils-r1 bcc61b7696f06db333c2f2db1606ed76 readme.gentoo-r1 b045f3acf546393ab6b3170781875358
_md5_=bc9440ee2c526e412faba6dd25dd9650
diff --git a/metadata/pkg_desc_index b/metadata/pkg_desc_index
index 7ee06c0cf267..49d8ff4e0457 100644
--- a/metadata/pkg_desc_index
+++ b/metadata/pkg_desc_index
@@ -6068,7 +6068,7 @@ dev-ml/ppx_assert 0.14.0-r1 0.15.0-r1 0.16.0 0.17.0: Assert-like extension nodes
dev-ml/ppx_base 0.14.0 0.15.0 0.16.0-r1 0.17.0: Base set of ppx rewriters
dev-ml/ppx_bench 0.14.1 0.15.0-r1 0.16.0 0.17.0: Syntax extension for writing in-line benchmarks in ocaml code
dev-ml/ppx_bin_prot 0.14.0 0.15.0-r1 0.16.0 0.17.0: Generation of bin_prot readers and writers from types
-dev-ml/ppx_blob 0.7.2 0.8.0: Include a file as a string at compile time
+dev-ml/ppx_blob 0.7.2 0.8.0 0.9.0: Include a file as a string at compile time
dev-ml/ppx_cold 0.14.0-r1 0.15.0 0.16.0 0.17.0: Expands [@cold] into [@inline never][@specialise never][@local never]
dev-ml/ppx_compare 0.14.0 0.15.0 0.16.0 0.17.0: Generation of comparison functions from types
dev-ml/ppx_custom_printf 0.14.0 0.14.1 0.15.0-r1 0.16.0 0.17.0: Printf-style format-strings for user-defined string conversion
@@ -15817,7 +15817,7 @@ sci-chemistry/elem 1.0.3-r3: periodic table of the elements
sci-chemistry/gelemental 2.0.0-r1 2.0.2: Periodic table viewer with detailed information on the chemical elements
sci-chemistry/gnome-chemistry-utils 0.14.17_p6-r2: Programs and library containing GTK widgets and C++ classes related to chemistry
sci-chemistry/gperiodic 3.0.3: Periodic table application for Linux
-sci-chemistry/gromacs 2020.7-r1 2021.7-r1 2022.6 2023.4 2023.9999 2024 2024.1 2024.2 2024.9999 9999: The ultimate molecular dynamics simulation package
+sci-chemistry/gromacs 2020.7-r1 2021.7-r1 2022.6 2023.5 2023.9999 2024 2024.3 2024.9999 9999: The ultimate molecular dynamics simulation package
sci-chemistry/ksdssp 040728-r1: An open source implementation of sci-chemistry/dssp
sci-chemistry/modeller 10.5: Homology or comparative modeling of protein three-dimensional structures
sci-chemistry/molden 6.9-r1: Display molecular density from GAMESS-UK, GAMESS-US, GAUSSIAN and Mopac/Ampac
diff --git a/metadata/timestamp.chk b/metadata/timestamp.chk
index 912a2a085d36..b04717f6e113 100644
--- a/metadata/timestamp.chk
+++ b/metadata/timestamp.chk
@@ -1 +1 @@
-Fri, 18 Oct 2024 04:35:45 +0000
+Fri, 18 Oct 2024 06:20:40 +0000