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authorRepository mirror & CI <repomirrorci@gentoo.org>2024-01-14 19:34:01 +0000
committerRepository mirror & CI <repomirrorci@gentoo.org>2024-01-14 19:34:01 +0000
commit0edf919dc3b2dd958587e6d4a529436194aa9841 (patch)
tree7fe5f5650c7abf9a559fd95736314921ce66debc /metadata/md5-cache/sci-biology
parentMerge updates from master (diff)
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2024-01-14 19:33:58 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/bamtools-2.5.24
-rw-r--r--metadata/md5-cache/sci-biology/bamtools-99994
-rw-r--r--metadata/md5-cache/sci-biology/fasttree-2.1.114
-rw-r--r--metadata/md5-cache/sci-biology/kallisto-0.46.24
-rw-r--r--metadata/md5-cache/sci-biology/seqan-3.1.04
-rw-r--r--metadata/md5-cache/sci-biology/uchime-4.2.40-r14
6 files changed, 12 insertions, 12 deletions
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.2 b/metadata/md5-cache/sci-biology/bamtools-2.5.2
index 33821d5b0ce5..2c82cb95cc23 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.2
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.2
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig app-alternatives/ninja >=dev-util/cmake-3.20.5
+BDEPEND=virtual/pkgconfig app-alternatives/ninja >=dev-build/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
DESCRIPTION=A programmer's API and an end-user's toolkit for handling BAM files
@@ -10,5 +10,5 @@ LICENSE=MIT
RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
SLOT=0/2.5.2
SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz -> bamtools-2.5.2.tar.gz
-_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake b7ccad6f1800c4ea58dbbdafb0b1b5e0
+_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake c7c9a62d6232cac66d4ea32d575c3e7c
_md5_=efdfbdbf4181a018ee9965d5c16be71f
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index 0bc4c77f1a07..720c9d0b4682 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig app-alternatives/ninja >=dev-util/cmake-3.20.5 >=dev-vcs/git-1.8.2.1[curl]
+BDEPEND=virtual/pkgconfig app-alternatives/ninja >=dev-build/cmake-3.20.5 >=dev-vcs/git-1.8.2.1[curl]
DEFINED_PHASES=compile configure install prepare test unpack
DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
DESCRIPTION=A programmer's API and an end-user's toolkit for handling BAM files
@@ -9,5 +9,5 @@ LICENSE=MIT
PROPERTIES=live
RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
SLOT=0/9999
-_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake b7ccad6f1800c4ea58dbbdafb0b1b5e0 git-r3 86fa1f157b70b9d2ff340c4633b1cf4b
+_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake c7c9a62d6232cac66d4ea32d575c3e7c git-r3 86fa1f157b70b9d2ff340c4633b1cf4b
_md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.11 b/metadata/md5-cache/sci-biology/fasttree-2.1.11
index 4ced6bb59973..a4d206565f1b 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.11
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.11
@@ -1,4 +1,4 @@
-BDEPEND=app-alternatives/ninja >=dev-util/cmake-3.20.5
+BDEPEND=app-alternatives/ninja >=dev-build/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test unpack
DESCRIPTION=Fast inference of approximately-maximum-likelihood phylogenetic trees
EAPI=7
@@ -10,5 +10,5 @@ LICENSE=GPL-2
REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
SLOT=0
SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.11.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.11.tar.gz
-_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake b7ccad6f1800c4ea58dbbdafb0b1b5e0
+_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake c7c9a62d6232cac66d4ea32d575c3e7c
_md5_=4a94b8db43f0aadb5ece67757ccbe635
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.46.2 b/metadata/md5-cache/sci-biology/kallisto-0.46.2
index dbc72b1df1f7..a5c7665402a3 100644
--- a/metadata/md5-cache/sci-biology/kallisto-0.46.2
+++ b/metadata/md5-cache/sci-biology/kallisto-0.46.2
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig app-alternatives/ninja >=dev-util/cmake-3.20.5
+BDEPEND=virtual/pkgconfig app-alternatives/ninja >=dev-build/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= ) test? ( dev-cpp/catch:0 sci-libs/hdf5 )
DESCRIPTION=Near-optimal RNA-Seq quantification
@@ -12,5 +12,5 @@ RDEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz -> kallisto-0.46.2.tar.gz
-_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake b7ccad6f1800c4ea58dbbdafb0b1b5e0
+_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake c7c9a62d6232cac66d4ea32d575c3e7c
_md5_=1b739cad0275e6dc5a320723611b78e9
diff --git a/metadata/md5-cache/sci-biology/seqan-3.1.0 b/metadata/md5-cache/sci-biology/seqan-3.1.0
index 7ada494614ab..dc81cac73235 100644
--- a/metadata/md5-cache/sci-biology/seqan-3.1.0
+++ b/metadata/md5-cache/sci-biology/seqan-3.1.0
@@ -1,4 +1,4 @@
-BDEPEND=app-alternatives/ninja >=dev-util/cmake-3.20.5
+BDEPEND=app-alternatives/ninja >=dev-build/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=app-arch/bzip2:= dev-cpp/range-v3 dev-libs/cereal sci-libs/lemon sys-libs/zlib:=
DESCRIPTION=C++ Sequence Analysis Library
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= dev-cpp/range-v3 dev-libs/cereal sci-libs/lemon sys-lib
REQUIRED_USE=cpu_flags_x86_sse4_2
SLOT=0
SRC_URI=https://github.com/seqan/seqan3/releases/download/3.1.0/seqan3-3.1.0-Source.tar.xz
-_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake b7ccad6f1800c4ea58dbbdafb0b1b5e0
+_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake c7c9a62d6232cac66d4ea32d575c3e7c
_md5_=327a33751512d78b13d5acd641ba3385
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1
index 59126a12d46c..8f06214b7ed1 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1
@@ -1,4 +1,4 @@
-BDEPEND=app-alternatives/ninja >=dev-util/cmake-3.20.5
+BDEPEND=app-alternatives/ninja >=dev-build/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DESCRIPTION=Fast, accurate chimera detection
EAPI=8
@@ -8,5 +8,5 @@ KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=public-domain
SLOT=0
SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz
-_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake b7ccad6f1800c4ea58dbbdafb0b1b5e0
+_eclasses_=toolchain-funcs e56c7649b804f051623c8bc1a1c44084 multilib c19072c3cd7ac5cb21de013f7e9832e0 flag-o-matic 78cf3cc2d5572fddf5e5e10c70f7c81a multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 xdg-utils baea6080dd821f5562d715887954c9d3 cmake c7c9a62d6232cac66d4ea32d575c3e7c
_md5_=d6d5b7ba215fd8eaf51d3847f4051df6