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authorRepository mirror & CI <repomirrorci@gentoo.org>2019-12-10 23:48:40 +0000
committerRepository mirror & CI <repomirrorci@gentoo.org>2019-12-10 23:48:40 +0000
commitbedf9ecf9e04dfad5936f0050cc242a9aeaef613 (patch)
treed15b080837431c20aba3773c39cfd29356e9591d /metadata/md5-cache/sci-biology
parentMerge updates from master (diff)
downloadgentoo-bedf9ecf9e04dfad5936f0050cc242a9aeaef613.tar.gz
gentoo-bedf9ecf9e04dfad5936f0050cc242a9aeaef613.tar.bz2
gentoo-bedf9ecf9e04dfad5936f0050cc242a9aeaef613.zip
2019-12-10 23:48:37 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/bedtools-2.26.03
-rw-r--r--metadata/md5-cache/sci-biology/bfast-0.7.0a3
-rw-r--r--metadata/md5-cache/sci-biology/biopandas-0.2.13
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-network-1.6.93
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-network-9999-r13
-rw-r--r--metadata/md5-cache/sci-biology/exonerate-2.2.0-r23
-rw-r--r--metadata/md5-cache/sci-biology/fasta-36.3.5e3
-rw-r--r--metadata/md5-cache/sci-biology/hmmer-2.3.2-r43
-rw-r--r--metadata/md5-cache/sci-biology/hmmer-3.1_beta23
-rw-r--r--metadata/md5-cache/sci-biology/psipred-3.43
-rw-r--r--metadata/md5-cache/sci-biology/psipred-3.53
-rw-r--r--metadata/md5-cache/sci-biology/seqan-1.4.2-r13
-rw-r--r--metadata/md5-cache/sci-biology/seqan-2.2.0-r13
13 files changed, 26 insertions, 13 deletions
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0
index ab9a934b865c..cc0e9c5d8db3 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.26.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0
@@ -7,7 +7,8 @@ IUSE=test
KEYWORDS=~amd64 ~x86
LICENSE=GPL-2
RDEPEND=sys-libs/zlib
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz https://dev.gentoo.org/~mgorny/dist/bedtools-2.26.0-fix-buildsystem.patch.bz2
_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 flag-o-matic 8a43b9830f1e64a7a5fc0a276afa0275 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 2a3000b370786b5c90a651e7dd7c4797 python-utils-r1 f7aef159261e9835066ddf8d3a0e3487 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=93c7c9cb11de4ad32cab7183dc2e6512
+_md5_=e1bd4df60aef5e7f61ab664bcd14cf44
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index 83d539bd0c44..c6653c750ce9 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -7,7 +7,8 @@ IUSE=test
KEYWORDS=~amd64 ~x86
LICENSE=GPL-2
RDEPEND=dev-perl/XML-Simple
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz
_eclasses_=autotools ea7865c8fba1ea8d3639f355fffe1a3c autotools-utils 95db0904ad0f62535e18e5ccb67cce5e desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 flag-o-matic 8a43b9830f1e64a7a5fc0a276afa0275 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=abc362f15c5107d96bedfb879ea0375f
+_md5_=f752137cf374be5cbb2754f3aa98ad0d
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.1 b/metadata/md5-cache/sci-biology/biopandas-0.2.1
index 3c3d56feffdf..cf9869f8cf75 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.1
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.1
@@ -8,7 +8,8 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=BSD
RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)]
REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 )
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.1.tar.gz
_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 cf4de3b8bc5cae734e3faa4b36e64cf7 epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 c037bf23d7eff50e222b067cd54e5f27 python-utils-r1 f7aef159261e9835066ddf8d3a0e3487 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils ff2ff954e6b17929574eee4efc5152ba
-_md5_=5a0449fad95f6d2e6b0930487808e8ef
+_md5_=bba68e6e899747c9c8fc7c9b532b6577
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
index 3640b8f81a3c..7bd5e3163500 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
@@ -7,7 +7,8 @@ IUSE=test
KEYWORDS=amd64 x86
LICENSE=|| ( Artistic GPL-1+ )
RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)]
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=cb366a6a0c6cf3c12320c2d6d3551abe
+_md5_=8f7c4053ffbec76cfad29cca2d99847b
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1
index 41e4ff4b325a..6ec62fbcb2fe 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1
@@ -7,6 +7,7 @@ IUSE=test
LICENSE=Artistic GPL-2
PROPERTIES=live
RDEPEND=>=sci-biology/bioperl-9999 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)]
+RESTRICT=!test? ( test )
SLOT=0
_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 git-2 3aabf18eba60687bbe6855eba271f688 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=025cd5fa89be402f3296160dbf755c8b
+_md5_=0ed6b7039879ff5542d0cf0e44ea6bba
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
index edbf4e0abc78..99442bd02b61 100644
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
@@ -8,7 +8,8 @@ KEYWORDS=~amd64 ~x86 ~ppc-macos ~x64-macos
LICENSE=GPL-3
RDEPEND=dev-libs/glib:2
REQUIRED_USE=test? ( utils )
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
_eclasses_=autotools ea7865c8fba1ea8d3639f355fffe1a3c libtool f143db5a74ccd9ca28c1234deffede96 multilib 1d91b03d42ab6308b5f4f6b598ed110e toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c
-_md5_=2efd53d13e6f08e4144477038f41e4af
+_md5_=05c99b447503c7a3fae4594cd126939a
diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.5e b/metadata/md5-cache/sci-biology/fasta-36.3.5e
index 76683927ab04..1c6b211f5ebe 100644
--- a/metadata/md5-cache/sci-biology/fasta-36.3.5e
+++ b/metadata/md5-cache/sci-biology/fasta-36.3.5e
@@ -6,7 +6,8 @@ HOMEPAGE=https://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml
IUSE=debug cpu_flags_x86_sse2 test
KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
LICENSE=fasta
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.5e.tar.gz
_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 flag-o-matic 8a43b9830f1e64a7a5fc0a276afa0275 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=4eed9011a4fc400bdf3adf77be6c8fe2
+_md5_=84b82aa26369497a27156f525e36590a
diff --git a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4 b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4
index 58b40abe2b1b..9bc345ffd85e 100644
--- a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4
+++ b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4
@@ -6,6 +6,7 @@ HOMEPAGE=http://hmmer.org/
IUSE=altivec test threads
KEYWORDS=~amd64 ~x86
LICENSE=GPL-2
+RESTRICT=!test? ( test )
SLOT=2
SRC_URI=http://eddylab.org/software/hmmer/2.3.2/hmmer-2.3.2.tar.gz
-_md5_=2f631b79914f25875fd00c05fd144807
+_md5_=e7199c0c0fe31d6c32ec1e285d23d2c8
diff --git a/metadata/md5-cache/sci-biology/hmmer-3.1_beta2 b/metadata/md5-cache/sci-biology/hmmer-3.1_beta2
index c098b0527d7b..0dfc8524d7bb 100644
--- a/metadata/md5-cache/sci-biology/hmmer-3.1_beta2
+++ b/metadata/md5-cache/sci-biology/hmmer-3.1_beta2
@@ -7,6 +7,7 @@ IUSE=altivec cpu_flags_x86_sse gsl mpi test +threads
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos
LICENSE=GPL-3
RDEPEND=mpi? ( virtual/mpi ) gsl? ( sci-libs/gsl:= )
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2.tar.gz
-_md5_=e1fda24a135e4e71cdf6ae399f38faea
+_md5_=96e45fe8b653c57b833ec948674bbe69
diff --git a/metadata/md5-cache/sci-biology/psipred-3.4 b/metadata/md5-cache/sci-biology/psipred-3.4
index 1d93b6b6c9d2..c1c044c6a714 100644
--- a/metadata/md5-cache/sci-biology/psipred-3.4
+++ b/metadata/md5-cache/sci-biology/psipred-3.4
@@ -6,7 +6,8 @@ IUSE=test
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=psipred
RDEPEND=app-shells/tcsh sci-biology/ncbi-tools sci-biology/update-blastdb
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.4.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )
_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e prefix c2993e4c430c1ee24f278983d6189501 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748
-_md5_=aa07fe12602b4a284c9d8734857542e5
+_md5_=44623bcd0b50824824056739420b4873
diff --git a/metadata/md5-cache/sci-biology/psipred-3.5 b/metadata/md5-cache/sci-biology/psipred-3.5
index 00a62a4e2f93..b4ec14863bfb 100644
--- a/metadata/md5-cache/sci-biology/psipred-3.5
+++ b/metadata/md5-cache/sci-biology/psipred-3.5
@@ -6,7 +6,8 @@ IUSE=test
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=psipred
RDEPEND=app-shells/tcsh sci-biology/ncbi-tools sci-biology/update-blastdb
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.5.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )
_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e prefix c2993e4c430c1ee24f278983d6189501 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748
-_md5_=aa07fe12602b4a284c9d8734857542e5
+_md5_=44623bcd0b50824824056739420b4873
diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
index ee0f6c106152..629cb48d8a21 100644
--- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
+++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
@@ -8,7 +8,8 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
LICENSE=BSD GPL-3
RDEPEND=app-arch/bzip2 sys-libs/zlib
REQUIRED_USE=cpu_flags_x86_sse4_1
+RESTRICT=!test? ( test )
SLOT=1.4
SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz
_eclasses_=cmake-utils be72eac95bd029ad1d81d5d656c3c83b desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 flag-o-matic 8a43b9830f1e64a7a5fc0a276afa0275 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 1d91b03d42ab6308b5f4f6b598ed110e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 2a3000b370786b5c90a651e7dd7c4797 python-utils-r1 f7aef159261e9835066ddf8d3a0e3487 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils ff2ff954e6b17929574eee4efc5152ba
-_md5_=1b7be060ecec73f1e66596a71b90a92a
+_md5_=1f1cf11ee07a7961e6fa23345e516b65
diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
index d0f8f8d0adeb..ade77db64650 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
@@ -8,7 +8,8 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=BSD GPL-3
RDEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2
REQUIRED_USE=cpu_flags_x86_sse4_1
+RESTRICT=!test? ( test )
SLOT=0
SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz
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