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| author |   David Seifert <soap@gentoo.org> | 2020-11-01 19:36:24 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2020-11-01 19:36:24 +0100 |
| commit | c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b (patch) | |
| tree | 286b98a7462614aedaf9131643130db4d5818006 /sci-biology/clustalw-mpi/files | |
| parent | sci-biology/lagan: Port to EAPI 7 (diff) | |
| download | gentoo-c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b.tar.gz gentoo-c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b.tar.bz2 gentoo-c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b.zip | |
sci-biology/clustalw-mpi: Port to EAPI 7
* Rename USE flags to avoid underscore
* Fix building against GCC 10 / -fno-common
Closes: https://bugs.gentoo.org/695122
Closes: https://bugs.gentoo.org/706960
Package-Manager: Portage-3.0.8, Repoman-3.0.2
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/clustalw-mpi/files')
| -rw-r--r-- | sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-fno-common.patch | 13 | ||||
| -rw-r--r-- | sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-makefile.patch (renamed from sci-biology/clustalw-mpi/files/0.13-gentoo.patch) | 0 |
2 files changed, 13 insertions, 0 deletions
diff --git a/sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-fno-common.patch b/sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-fno-common.patch new file mode 100644 index 000000000000..da74f0ba172d --- /dev/null +++ b/sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-fno-common.patch @@ -0,0 +1,13 @@ +--- a/parallel_compare.c ++++ b/parallel_compare.c +@@ -74,8 +74,8 @@ + static sint **accum; + static sint *diag_index; + static char *slopes; +-sint ktup,window,wind_gap,signif; +-sint *zza, *zzb, *zzc, *zzd; ++extern sint ktup,window,wind_gap,signif; ++extern sint *zza, *zzb, *zzc, *zzd; + extern Boolean percent; + static void make_p_ptrs(sint *tptr, sint *pl, sint naseq, sint l); + static void make_n_ptrs(sint *tptr, sint *pl, sint naseq, sint len); diff --git a/sci-biology/clustalw-mpi/files/0.13-gentoo.patch b/sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-makefile.patch index 6e36061cbb39..6e36061cbb39 100644 --- a/sci-biology/clustalw-mpi/files/0.13-gentoo.patch +++ b/sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-makefile.patch |