diff options
| author |   David Seifert <soap@gentoo.org> | 2016-04-09 21:58:14 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-04-09 21:58:31 +0200 |
| commit | 0f059b5eb7e03f75705f623dc74e27842540da40 (patch) | |
| tree | bf90363664ee396d7caba342a558f66579e38d9c /sci-biology | |
| parent | sci-electronics/gazebo: bump to 7.1.0 (diff) | |
| download | gentoo-0f059b5eb7e03f75705f623dc74e27842540da40.tar.gz gentoo-0f059b5eb7e03f75705f623dc74e27842540da40.tar.bz2 gentoo-0f059b5eb7e03f75705f623dc74e27842540da40.zip | |
sci-biology/samtools: Remove lua dep, fix perl shebangs
Package-Manager: portage-2.2.28
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/samtools/samtools-0.1.20-r2.ebuild (renamed from sci-biology/samtools/samtools-0.1.20-r1.ebuild) | 12 |
1 files changed, 11 insertions, 1 deletions
diff --git a/sci-biology/samtools/samtools-0.1.20-r1.ebuild b/sci-biology/samtools/samtools-0.1.20-r2.ebuild index 744d15ff5771..e30ed26ca09f 100644 --- a/sci-biology/samtools/samtools-0.1.20-r1.ebuild +++ b/sci-biology/samtools/samtools-0.1.20-r2.ebuild @@ -20,7 +20,6 @@ IUSE="examples" REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND="sys-libs/ncurses:0= - dev-lang/lua:0 dev-lang/perl" DEPEND="${RDEPEND} virtual/pkgconfig" @@ -50,6 +49,17 @@ src_install() { mv "${ED}"/usr/bin/${PN}-${SLOT}/varfilter{,-${SLOT}}.py || die python_replicate_script "${ED}"/usr/bin/${PN}-${SLOT}/varfilter-${SLOT}.py + # fix perl shebangs + pushd "${ED}"usr/bin/"${PN}-${SLOT}"/ >> /dev/null + local i + for i in plot-bamcheck *.pl; do + sed -e '1s:.*:#!/usr/bin/env perl:' -i "${i}" || die + done + + # remove lua scripts + rm -f r2plot.lua vcfutils.lua || die + popd >> /dev/null + dolib.so libbam-${SLOT}$(get_libname 1) dosym libbam-${SLOT}$(get_libname 1) /usr/$(get_libdir)/libbam-${SLOT}$(get_libname) |