sci-chemistry/procheck: QA fixes and EAPI bump

* Bump to EAPI 6
* Generate missing checksums

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=614234
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>

1 files changed, 86 insertions, 0 deletions

diff --git a/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild b/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild
new file mode 100644
index 000000000000..585c9b591d9c
--- /dev/null
+++ b/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild
@@ -0,0 +1,86 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit fortran-2 multilib toolchain-funcs versionator
+
+DESCRIPTION="Checks the stereochemical quality of a protein structure"
+HOMEPAGE="http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html"
+SRC_URI="
+	${P}.tar.gz ${P}-README
+	doc? ( ${P}-manual.tar.gz )"
+
+LICENSE="procheck"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc"
+
+RDEPEND="app-shells/tcsh"
+DEPEND="${RDEPEND}"
+
+RESTRICT="fetch"
+
+S="${WORKDIR}/${PN}"
+
+pkg_nofetch() {
+	elog "Please visit http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/download.html"
+	elog "And follow the instruction for downloading."
+	elog "Files should be stored in following way"
+	elog "${PN}.tar.gz  ->  ${DISTDIR}/${P}.tar.gz"
+	elog "README  ->  ${DISTDIR}/${P}-README"
+	use doc && elog "manual.tar.gz  ->  ${DISTDIR}/${P}-manual.tar.gz"
+}
+
+PATCHES=(
+		"${FILESDIR}"/${P}-ldflags.patch
+		"${FILESDIR}"/${P}-close.patch
+)
+
+src_compile() {
+	emake \
+		F77=$(tc-getFC) \
+		CC=$(tc-getCC) \
+		COPTS="${CFLAGS}" \
+		FOPTS="${FFLAGS} -std=legacy"
+}
+
+src_install() {
+	for i in *.scr; do
+		newbin ${i} ${i%.scr}
+	done
+
+	exeinto /usr/libexec/${PN}/
+	doexe \
+		anglen \
+		clean \
+		rmsdev \
+		secstr \
+		gfac2pdb \
+		pplot \
+		bplot \
+		tplot \
+		mplot \
+		vplot \
+		viol2pdb \
+		wirplot \
+		nb
+	dodoc "${DISTDIR}"/${P}-README
+
+	insinto /usr/libexec/${PN}/
+	doins *.dat *.prm
+	newins resdefs.dat resdefs.data
+
+	cat >> "${T}"/30${PN} <<- EOF
+	prodir="${EPREFIX}/usr/libexec/${PN}/"
+	EOF
+
+	doenvd "${T}"/30${PN}
+
+	if use doc; then
+		pushd "${WORKDIR}" > /dev/null
+			docinto html
+			dodoc -r manual
+		popd > /dev/null
+	fi
+}