sci-mathematics/rstudio: Bump to 1.2.1335, fix compile with >=boost 1.70.0

Bump, thanks to Neil, Ulenrich, François Valenduc, Thomas Bettler, Simon Maurer, Bernd Feige and asturm for helping. Split the rstudio-1.1.463-boost-1.69.0_p?.patch patches into 3 patch files. Closes: https://bugs.gentoo.org/683050 Closes: https://bugs.gentoo.org/686186 Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Mark Wright <gienah@gentoo.org>
author: Mark Wright <gienah@gentoo.org> 2019-08-22 00:03:46 +1000
committer: Mark Wright <gienah@gentoo.org> 2019-08-22 00:03:46 +1000
commit: cdda9adf72b626d020a063419c1f376755d1b456 (patch)
tree: 4ca0ef5398e5d5e8c68d4424da0e399980d17528 /sci-mathematics
parent: net-im/telegram-desktop-bin: drop old (diff)
download: gentoo-cdda9adf72b626d020a063419c1f376755d1b456.tar.gz
gentoo-cdda9adf72b626d020a063419c1f376755d1b456.tar.bz2
gentoo-cdda9adf72b626d020a063419c1f376755d1b456.zip
17 files changed, 1451 insertions, 383 deletions
diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest
index 79c6b60ad010..0b00d0f295ae 100644
--- a/sci-mathematics/rstudio/Manifest
+++ b/sci-mathematics/rstudio/Manifest
@@ -1,13 +1,16 @@
 DIST chromedriver-linux 19303552 BLAKE2B 610396fd74f2adc4c249ca971a53a6dd4ab06145d0b37d59adf66180dfada52192b20203bf3d992c270bd4f787df5c85511ca325aed06cbd9318add3eccfde30 SHA512 18774ede961dec222058dd0e3f128d63732cd444ee310136b44d5bf508a4f2f2c164a2c8d195d80bce8b5fb6303559e167f82f384e4a58e30f48b151a4206ee8
 DIST core-dictionaries.zip 876339 BLAKE2B f29afcbf5a7f8ec635e5a5b248d978af286d18488f54c9a09a2b95fde19b796e4473e5846402a46dd24b71c6e4167512539aaa32ab6d99713d500a80aaf46796 SHA512 9c5830cc9fed575e223f1c61f02e48c5aea6801bb0cd2586f02437c17fdffdb1d36c396d5a8ecbe02ba01196e73458304345b1f6b92c052bc7a7d05961fac2c9
 DIST gin-1.5.zip 1055663 BLAKE2B 11b86245d54967f0c76f22f7460fb752c410db3c59a019bb538a48fd0de7e87552f2f5bb9ce604e6ed508136a6a2b0814f061161579429daae8ca55b1a448114 SHA512 3f6649565f9600daaca6ddf3fb431925b5a1ce1ada38e6389de64cef617abba9d3f49c555d0a20053fb06f17ccbe4e1141b39966fbe4b2975d7b120377504897
+DIST gin-2.1.2.zip 1341053 BLAKE2B 515338ba50ba2183c101b42183e42ebf15613aae8751a0dcedb4b047de4ca8fab85eb240f5f0c92955441dbb87e80b3edbdae8d83f1e74f74c7de067d18cf108 SHA512 03407b6318ffb0dd504ce520649ed90e845f13fbdbd0bfb4d7e3b127842f1735093e39674077c3a04a11d434aefdc3a734652c3f85e8ab00ff37ae760ccb8dbb
 DIST gwt-2.7.0.zip 108818328 BLAKE2B 9af969f3f2577be041fcfb58f228fab4b5479fa0da5ff054ab0a59cad751590a1b4ae8d7fabc8a50e3b0e5d7eb9b2896c485d929421f75e6a2f6513480438a31 SHA512 a1eed5cc25c888cf81d4f22b1f9494d5d8567b911f7aeb1d164a6359120543668280afe1a3ffc9ed87b139c7db67fbcaaabde2066e3279909d7cd6fc22eaf499
+DIST gwt-2.8.1.zip 95650299 BLAKE2B 3853d50d1346e313903b6f0c4b8405ce9e896e51652483e5c7e9d711daa213e1341c71765b4a3fb061b58f90d49420245963a0480db8b71fe7aed6cd43782c14 SHA512 feeb00cb0413c2703dfd6931f57ba669813bd65f814715f2c04dd6dc69e885a8048337272333d7504c48e9fa52cdab699f854ee13211228ab142a1f458ee33ae
 DIST packrat-0.98.1000.tar.gz 97677 BLAKE2B 282fe33dc5ba366ceea05a222ae2d018bc3ad8f35fad73c585a3d4901c3287e6902277a9c7ca087854f3944bd85ff1b1d1f02869ece686b10f946e2f1cb1296c SHA512 2290c768ecf27a037e73c3f8336b9fd71c68ff19d071b4a8fbc469550d29007cacacdb75f854f73b5db2139a5104f129b85a3612e2ee47bd6118ee13f7d103a6
 DIST rmarkdown-0.98.1000.tar.gz 1423820 BLAKE2B eac8c9cf438c9b44ddfe954602dd67a83764b0c988b3ba571877c986b0d5d237059ed6643a86bb404428857ec8c346bfecd12f7cd15cde301cb0ce331f842b7f SHA512 df3540c24c87930fe55bff2ffe67c86c219800cb00ed72ba9451ecd0d0cad411548a78c1a04b9a2e301e853616dcb77e09129c4e48ade6f16d3f14b7ea7e4852
 DIST rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz 197051 BLAKE2B 1f3f9fe71d7b50ab5108dfdbd3cc0b882bcc935ee58e8a9145b07a18bb86c39bc45e321a13add24df99492bc30548df716775c339bcbf4efc2bfe158299ae55a SHA512 208dc349f4aa7613ecf94939aba60d22d3a06972344b526c9b6c951015571f5922927bca08db571a7b8a268e42609a4f558f01278c9685f6da2ffc66a1f95ade
 DIST rstudio-1.1.383.tar.gz 20196702 BLAKE2B 5164230a92618e4252269ad0016b200294d1e7fa502cc49aa694486cda098ee7ffc65e6c74a87d891d0532f5cc15d1552aa86d04047d07b4f275cbc4d2758647 SHA512 3f637f9bce2c1ad1a4ed3e74287da722190a4e12b0cace6ffcca271977d49dcecca9365f2064366aad94e87851593cab83fa9361e9a9222a9f67fe9451f31ed2
 DIST rstudio-1.1.453.tar.gz 20200360 BLAKE2B 560b89e53b04356ecf9a02dd8a7e72ad8d6c30bf406fbe7e22a82cc6d33d40e84bececf5ecda9cf086360b2bd2fa64d6b33c2dd675ef5f605f9e825d7ca2dc84 SHA512 f2be0866f645007a6f80959109928820c89480057c3660d23e790591797d4f4c371733f49290dae9c81bfc2715821528e2a105e7a66d4d9ffbfc7ee2a596976c
 DIST rstudio-1.1.463.tar.gz 20203779 BLAKE2B 97f879539cbb7051af362a8469795a47feb42d18ff46dbbdffe36e0685d1cd5704848b3bf5a5611d482a09567722e35288527302cd521b18e2a48b347c919e17 SHA512 987347563a9726363c28d866e1372eae8eb19a5cbd0e33c7ee0e0c8f90471c4b69de0f559c00410523841b6c090b584652e01496f5db33c015a4554d2f4e179b
+DIST rstudio-1.2.1335.tar.gz 20440199 BLAKE2B cdd54a7df5a234bcc6d440f4ba5b45e58ea469f8dac5a17d9088f9d65035495c86b5a308cde28a224648f96a74038299863291f3c516a1d567762ecc5bfb079c SHA512 90657effc55264bf3efa1a8a5d2bbe94a37727f0450202ade99b9fbb71ea75b6dd9fa798d17cd4d1a1a97a16f186de8004d1888b6ea43f36d5252508520d3cde
 DIST selenium-java-2.37.0.zip 24625928 BLAKE2B b369a805ae96f0d0913c4be42888d9c2a1e213ff982f9daefe73fadb705baa80ab0186ab50ed52609e83697cffaf8d617d06d75405cb8e1c3fe8e7c5b81dba25 SHA512 68624e82dbc751a25c50fad72702a98eb30d77fd4337d2a969f8e06bcc49e5f8c835cd27ec53772f3375014ddde1d5636936e966b75f3594a9f86aa18ba4e779
 DIST selenium-server-standalone-2.37.0.jar 34730734 BLAKE2B 3899b1d4c5f9153c1f9f13bec66f7c1456ea2e0f34db7d8e54a1ce9063c33a05b3cf95216c2ae06bb40504f72f343a4b9ba6c8553fbbc340e7c18a5b612dde5c SHA512 b215446d42d2d1f69664349b6ae6dc53a532d3624c91254f0f4183d0ad764648792e5cc1126a55a1e60d9687d55200fed01d6d2f46cc3d853b1fa6ee38111018
 DIST shinyapps-0.98.1000.tar.gz 910095 BLAKE2B 4f9364692348bb52cbd12cc6ee447841cb0c805327f2518b2a9545920b602b954a98dea68ccb3daf32d2c3bab6464fb15402844d93277193315f1ae7b3ca5190 SHA512 3162317c4c20cfc1497e952a8235867084d629ae88407e6c465b3e208adb1dc97abfe6b9922e0374ddf4c8e38a76e112942bd312c54a66f74e6f2a3fe4c0a07c
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch
index aa3db25f3c01..a7a48572de30 100644
--- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch
+++ b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch
@@ -1,4 +1,4 @@
---- /dev/null	2018-11-10 15:32:26.332997437 +1100
+--- /dev/null	2019-03-19 11:03:33.121000004 +1100
 +++ rstudio-1.1.463/src/cpp/core/include/core/BoostSignals.hpp	2018-11-17 21:24:35.285976284 +1100
 @@ -0,0 +1,40 @@
 +/*
@@ -458,223 +458,3 @@
  };
  
  ProjectContext& projectContext();
---- rstudio-1.1.463-orig/src/cpp/session/modules/SessionPlots.hpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/SessionPlots.hpp	2018-11-17 21:24:35.292976352 +1100
-@@ -16,7 +16,7 @@
- #ifndef SESSION_PLOTS_HPP
- #define SESSION_PLOTS_HPP
- 
--#include <boost/signals.hpp>
-+#include <core/BoostSignals.hpp>
- 
- namespace rstudio {
- namespace core {
-@@ -35,9 +35,9 @@
- 
- struct Events : boost::noncopyable
- {
--   boost::signal<void()> onBeforeNewPlot;
--   boost::signal<void()> onBeforeNewGridPage;
--   boost::signal<void()> onNewPlot;
-+   RSTUDIO_BOOST_SIGNAL<void()> onBeforeNewPlot;
-+   RSTUDIO_BOOST_SIGNAL<void()> onBeforeNewGridPage;
-+   RSTUDIO_BOOST_SIGNAL<void()> onNewPlot;
- };
- 
- Events& events();
---- rstudio-1.1.463-orig/src/cpp/session/modules/build/SessionSourceCpp.cpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/build/SessionSourceCpp.cpp	2018-11-17 21:24:35.293976361 +1100
-@@ -15,11 +15,11 @@
- 
- #include "SessionSourceCpp.hpp"
- 
--#include <boost/signal.hpp>
- #include <boost/algorithm/string/trim.hpp>
- #include <boost/algorithm/string/predicate.hpp>
- #include <boost/algorithm/string/join.hpp>
- 
-+#include <core/BoostSignals.hpp>
- #include <core/Error.hpp>
- #include <core/FilePath.hpp>
- #include <core/StringUtils.hpp>
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp	2018-11-17 21:24:35.294976371 +1100
-@@ -142,7 +142,7 @@
-       LOG_ERROR(error);
-    
-    // capture console output, error
--   boost::signals::scoped_connection consoleHandler =
-+   RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler =
-          module_context::events().onConsoleOutput.connect(
-             boost::bind(chunkConsoleOutputHandler,
-                         _1,
-@@ -219,7 +219,7 @@
-       LOG_ERROR(error);
-    
-    // capture console output, error
--   boost::signals::scoped_connection consoleHandler =
-+   RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler =
-          module_context::events().onConsoleOutput.connect(
-             boost::bind(chunkConsoleOutputHandler,
-                         _1,
-@@ -363,7 +363,7 @@
-       LOG_ERROR(error);
-    
-    // capture console output, error
--   boost::signals::scoped_connection consoleHandler =
-+   RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler =
-          module_context::events().onConsoleOutput.connect(
-             boost::bind(chunkConsoleOutputHandler,
-                         _1,
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp	2018-11-17 21:24:35.294976371 +1100
-@@ -16,6 +16,8 @@
- #include "SessionRmdNotebook.hpp"
- #include "NotebookCapture.hpp"
- 
-+#include <boost/make_shared.hpp>
-+
- namespace rstudio {
- namespace session {
- namespace modules {
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.cpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.cpp	2018-11-17 21:24:35.295976381 +1100
-@@ -441,7 +441,7 @@
-    }
- 
-    // unhook all our event handlers
--   BOOST_FOREACH(const boost::signals::connection connection, connections_) 
-+   BOOST_FOREACH(const RSTUDIO_BOOST_CONNECTION connection, connections_) 
-    {
-       connection.disconnect();
-    }
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.hpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.hpp	2018-11-17 21:24:35.295976381 +1100
-@@ -18,8 +18,7 @@
- 
- #include <session/SessionModuleContext.hpp>
- 
--#include <boost/signal.hpp>
--
-+#include <core/BoostSignals.hpp>
- #include <core/json/Json.hpp>
- 
- #include <r/RSexp.hpp>
-@@ -99,7 +98,7 @@
-    bool hasErrors_;
- 
-    std::vector<boost::shared_ptr<NotebookCapture> > captures_;
--   std::vector<boost::signals::connection> connections_;
-+   std::vector<RSTUDIO_BOOST_CONNECTION> connections_;
- };
- 
- } // namespace notebook
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp	2018-11-17 21:24:35.295976381 +1100
-@@ -20,11 +20,12 @@
- 
- #include <boost/format.hpp>
- #include <boost/foreach.hpp>
--#include <boost/signals/connection.hpp>
- 
--#include <core/system/FileMonitor.hpp>
--#include <core/StringUtils.hpp>
-+#include <core/BoostSignals.hpp>
- #include <core/Exec.hpp>
-+#include <core/StringUtils.hpp>
-+
-+#include <core/system/FileMonitor.hpp>
- 
- #include <session/SessionModuleContext.hpp>
- 
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp	2018-11-17 21:24:35.296976391 +1100
-@@ -18,8 +18,10 @@
- #define SESSION_NOTEBOOK_PLOTS_HPP
- 
- #include <boost/function.hpp>
--#include <boost/signals/connection.hpp>
-+
-+#include <core/BoostSignals.hpp>
- #include <core/FilePath.hpp>
-+
- #include <r/RSexp.hpp>
- 
- #include "NotebookCapture.hpp"
-@@ -80,9 +82,9 @@
- 
-    unsigned lastOrdinal_;
- 
--   boost::signals::connection onBeforeNewPlot_;
--   boost::signals::connection onBeforeNewGridPage_;
--   boost::signals::connection onNewPlot_;
-+   RSTUDIO_BOOST_CONNECTION onBeforeNewPlot_;
-+   RSTUDIO_BOOST_CONNECTION onBeforeNewGridPage_;
-+   RSTUDIO_BOOST_CONNECTION onNewPlot_;
- 
-    double width_;
-    double height_;
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp	2018-11-17 21:24:35.296976391 +1100
-@@ -87,7 +87,7 @@
-       pInput_->enque(kThreadQuitCommand);
- 
-       // unregister handlers
--      BOOST_FOREACH(boost::signals::connection connection, handlers_)
-+      BOOST_FOREACH(RSTUDIO_BOOST_CONNECTION connection, handlers_)
-       {
-          connection.disconnect();
-       }
-@@ -651,7 +651,7 @@
-    boost::shared_ptr<ChunkExecContext> execContext_;
- 
-    // registered signal handlers
--   std::vector<boost::signals::connection> handlers_;
-+   std::vector<RSTUDIO_BOOST_CONNECTION> handlers_;
- 
-    // the thread which submits console input, and the queue which feeds it
-    boost::thread console_;
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp	2018-11-17 21:24:35.296976391 +1100
-@@ -18,7 +18,8 @@
- #define SESSION_RMARKDOWN_NOTEBOOK_HPP
- 
- #include <ctime>
--#include <boost/signals.hpp>
-+
-+#include <core/BoostSignals.hpp>
- #include <core/json/Json.hpp>
- 
- #define kChunkLibDir "lib"
-@@ -76,24 +77,24 @@
- struct Events : boost::noncopyable
- {
-    // Document {0}, chunk {1} from context id {3} execution completed
--   boost::signal<void(const std::string&, const std::string&,
-+   RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&,
-                       const std::string&)> 
-                 onChunkExecCompleted;
- 
-    // Document {0}, chunk {1} had console output of type {2} and text {3}
--   boost::signal<void(const std::string&, const std::string&, int, 
-+   RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&, int, 
-                 const std::string&)>
-                 onChunkConsoleOutput;
- 
--   boost::signal<void(const core::FilePath&, const core::FilePath&, 
-+   RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&, 
-                       const core::json::Value& metadata, unsigned ordinal)> 
-                          onPlotOutput;
--   boost::signal<void(const core::FilePath&, const core::FilePath&,
-+   RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&,
-                       const core::json::Value& metadata)> onHtmlOutput;
--   boost::signal<void(const core::json::Object&)> onErrorOutput;
--   boost::signal<void(const core::FilePath&, const core::FilePath&,
-+   RSTUDIO_BOOST_SIGNAL<void(const core::json::Object&)> onErrorOutput;
-+   RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&,
-                       const core::json::Value& metadata)> onDataOutput;
--   boost::signal<void(Condition condition, const std::string& message)> 
-+   RSTUDIO_BOOST_SIGNAL<void(Condition condition, const std::string& message)> 
-                          onCondition;
- };
- 
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch
index 961723fd224f..d90ce005a1a0 100644
--- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch
+++ b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch
@@ -1,167 +1,220 @@
---- rstudio-1.1.463-orig/src/cpp/CMakeLists.txt	2018-11-17 21:24:35.285976284 +1100
-+++ rstudio-1.1.463/src/cpp/CMakeLists.txt	2018-11-17 21:41:02.712507842 +1100
-@@ -175,6 +175,9 @@
-       set(Boost_USE_STATIC_LIBS ON)
-       set(BOOST_INCLUDEDIR  ${RSTUDIO_TOOLS_BOOST}/include)
-       find_package(Boost ${BOOST_VERSION} REQUIRED)
-+      if(NOT Boost_VERSION VERSION_LESS 1.69.0)
-+         list(REMOVE_ITEM BOOST_LIBS signals)
-+      endif()
- 
-       # define library list manually (find_package doesn't always pick them up)
-       set(BOOST_LIB_DIR ${RSTUDIO_TOOLS_BOOST}/lib)
-@@ -184,11 +187,15 @@
-       message(STATUS "Using RStudio-provided Boost ${BOOST_VERSION}")
-    else()
-       add_definitions(-DRSTUDIO_BOOST_NAMESPACE=boost)
-+      find_package(Boost ${BOOST_VERSION} REQUIRED)
-+      if(NOT Boost_VERSION VERSION_LESS 1.69.0)
-+         list(REMOVE_ITEM BOOST_LIBS signals)
-+      endif()
-       find_package(Boost ${BOOST_VERSION} REQUIRED COMPONENTS ${BOOST_LIBS})
-       message(STATUS "Using system Boost ${BOOST_VERSION}")
-    endif()
- 
--   # WIN32 BOOST
-+# WIN32 BOOST
- else()
-    # hard-code to our own prebuilt boost libs
-    add_definitions(-DRSTUDIO_BOOST_NAMESPACE=rstudio_boost)
-@@ -211,14 +218,14 @@
- # allow opt-in to using Boost.Signals2
- # TODO: remove this in RStudio v1.3 and port to signals2
- if(NOT RSTUDIO_BOOST_SIGNALS_VERSION)
--   if (BOOST_VERSION VERSION_LESS 1.69.0)
-+   if (Boost_VERSION VERSION_LESS 1.69.0)
-       set(RSTUDIO_BOOST_SIGNALS_VERSION 1)
-    else()
-       set(RSTUDIO_BOOST_SIGNALS_VERSION 2)
-    endif()
- endif()
- 
--message(STATUS "Using Booost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}")
-+message(STATUS "Using Boost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}")
- add_definitions(-DRSTUDIO_BOOST_SIGNALS_VERSION=${RSTUDIO_BOOST_SIGNALS_VERSION})
- 
- # add boost as system include directory
---- rstudio-1.1.463-orig/src/cpp/core/include/core/r_util/RFunctionInformation.hpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/core/include/core/r_util/RFunctionInformation.hpp	2018-11-17 21:41:02.713507852 +1100
-@@ -75,9 +75,9 @@
-    const std::string& name() const { return name_; }
-    const boost::optional<std::string>& defaultValue() const { return defaultValue_; }
-    boost::tribool hasDefault() const { return hasDefault_; }
--   bool isUsed() const { return isUsed_; }
-+   bool isUsed() const { return bool(isUsed_); }
-    void setIsUsed(bool value) { isUsed_ = value; }
--   bool isMissingnessHandled() const { return isMissingnessHandled_; }
-+   bool isMissingnessHandled() const { return bool(isMissingnessHandled_); }
-    void setMissingnessHandled(bool value) { isMissingnessHandled_ = value; }
+--- rstudio-1.1.463-orig/src/cpp/session/modules/SessionPlots.hpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/SessionPlots.hpp	2018-11-17 21:24:35.292976352 +1100
+@@ -16,7 +16,7 @@
+ #ifndef SESSION_PLOTS_HPP
+ #define SESSION_PLOTS_HPP
+ 
+-#include <boost/signals.hpp>
++#include <core/BoostSignals.hpp>
+ 
+ namespace rstudio {
+ namespace core {
+@@ -35,9 +35,9 @@
+ 
+ struct Events : boost::noncopyable
+ {
+-   boost::signal<void()> onBeforeNewPlot;
+-   boost::signal<void()> onBeforeNewGridPage;
+-   boost::signal<void()> onNewPlot;
++   RSTUDIO_BOOST_SIGNAL<void()> onBeforeNewPlot;
++   RSTUDIO_BOOST_SIGNAL<void()> onBeforeNewGridPage;
++   RSTUDIO_BOOST_SIGNAL<void()> onNewPlot;
+ };
+ 
+ Events& events();
+--- rstudio-1.1.463-orig/src/cpp/session/modules/build/SessionSourceCpp.cpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/build/SessionSourceCpp.cpp	2018-11-17 21:24:35.293976361 +1100
+@@ -15,11 +15,11 @@
+ 
+ #include "SessionSourceCpp.hpp"
+ 
+-#include <boost/signal.hpp>
+ #include <boost/algorithm/string/trim.hpp>
+ #include <boost/algorithm/string/predicate.hpp>
+ #include <boost/algorithm/string/join.hpp>
+ 
++#include <core/BoostSignals.hpp>
+ #include <core/Error.hpp>
+ #include <core/FilePath.hpp>
+ #include <core/StringUtils.hpp>
+--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp	2018-11-17 21:24:35.294976371 +1100
+@@ -142,7 +142,7 @@
+       LOG_ERROR(error);
     
- private:
-@@ -130,7 +130,7 @@
+    // capture console output, error
+-   boost::signals::scoped_connection consoleHandler =
++   RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler =
+          module_context::events().onConsoleOutput.connect(
+             boost::bind(chunkConsoleOutputHandler,
+                         _1,
+@@ -219,7 +219,7 @@
+       LOG_ERROR(error);
     
-    bool isPrimitive()
-    {
--      return isPrimitive_ == true;
-+      return bool(isPrimitive_);
-    }
+    // capture console output, error
+-   boost::signals::scoped_connection consoleHandler =
++   RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler =
+          module_context::events().onConsoleOutput.connect(
+             boost::bind(chunkConsoleOutputHandler,
+                         _1,
+@@ -363,7 +363,7 @@
+       LOG_ERROR(error);
     
-    void setIsPrimitive(bool isPrimitive)
---- rstudio-1.1.463-orig/src/cpp/session/modules/SessionRParser.cpp	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/SessionRParser.cpp	2018-11-17 21:41:02.714507862 +1100
-@@ -390,7 +390,7 @@
-    if (!failed)
+    // capture console output, error
+-   boost::signals::scoped_connection consoleHandler =
++   RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler =
+          module_context::events().onConsoleOutput.connect(
+             boost::bind(chunkConsoleOutputHandler,
+                         _1,
+--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp	2018-11-17 21:24:35.294976371 +1100
+@@ -16,6 +16,8 @@
+ #include "SessionRmdNotebook.hpp"
+ #include "NotebookCapture.hpp"
+ 
++#include <boost/make_shared.hpp>
++
+ namespace rstudio {
+ namespace session {
+ namespace modules {
+--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.cpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.cpp	2018-11-17 21:24:35.295976381 +1100
+@@ -441,7 +441,7 @@
+    }
+ 
+    // unhook all our event handlers
+-   BOOST_FOREACH(const boost::signals::connection connection, connections_) 
++   BOOST_FOREACH(const RSTUDIO_BOOST_CONNECTION connection, connections_) 
     {
-       DEBUG("--- Found function in pkgInfo index: " << *fnInfo.binding());
--      return fnInfo.performsNse();
-+      return bool(fnInfo.performsNse());
+       connection.disconnect();
     }
-    
-    // Handle some special cases first.
---- rstudio-1.1.463-orig/src/tools/clang-ubsan-build	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/tools/clang-ubsan-build	2018-11-17 21:41:02.714507862 +1100
-@@ -10,19 +10,19 @@
- 
- : ${RSTUDIO_USE_LIBCXX="Yes"}
- : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"}
--: ${RSTUDIO_BOOST_VERSION="1.56.0"}
-+: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.56.0"}
- 
- mkdir -p "${BUILD_DIR}"
- cd "${BUILD_DIR}"
--cmake ../cpp                                                 \
--    -DLIBR_HOME="${R_HOME}"                                  \
--    -DCMAKE_C_COMPILER="${CC}"                               \
--    -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}"                \
--    -DCMAKE_CXX_COMPILER="${CXX}"                            \
--    -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}"              \
--    -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}"             \
--    -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \
--    -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}"       \
-+cmake ../cpp                                                               \
-+    -DLIBR_HOME="${R_HOME}"                                                \
-+    -DCMAKE_C_COMPILER="${CC}"                                             \
-+    -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}"                              \
-+    -DCMAKE_CXX_COMPILER="${CXX}"                                          \
-+    -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}"                            \
-+    -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}"                           \
-+    -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}"               \
-+    -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \
-     "$@"
- cd ..
- 
---- rstudio-1.1.463-orig/src/tools/gcc-ubsan-build	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/tools/gcc-ubsan-build	2018-11-17 21:41:02.715507871 +1100
-@@ -19,19 +19,19 @@
- # NOTE: Boost 1.50.0 not compatible with gcc-6
- : ${RSTUDIO_USE_LIBCXX="No"}
- : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"}
--: ${RSTUDIO_BOOST_VERSION="1.54.0"}
-+: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.54.0"}
- 
- mkdir -p "${BUILD_DIR}"
- cd "${BUILD_DIR}"
--cmake ../cpp                                                 \
--    -DLIBR_HOME="${R_HOME}"                                  \
--    -DCMAKE_C_COMPILER="${CC}"                               \
--    -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}"                \
--    -DCMAKE_CXX_COMPILER="${CXX}"                            \
--    -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}"              \
--    -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}"             \
--    -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \
--    -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}"       \
-+cmake ../cpp                                                               \
-+    -DLIBR_HOME="${R_HOME}"                                                \
-+    -DCMAKE_C_COMPILER="${CC}"                                             \
-+    -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}"                              \
-+    -DCMAKE_CXX_COMPILER="${CXX}"                                          \
-+    -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}"                            \
-+    -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}"                           \
-+    -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}"               \
-+    -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \
-     "$@"
- cd ..
- 
---- rstudio-1.1.463-orig/src/tools/xcode-ubsan-build	2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/tools/xcode-ubsan-build	2018-11-17 21:41:02.715507871 +1100
-@@ -15,13 +15,13 @@
- # sanitizers released with newer versions of clang)
- mkdir -p "${BUILD_DIR}"
- cd "${BUILD_DIR}"
--cmake ../cpp -GXcode                 \
--    -DLIBR_HOME="${R_HOME}"          \
--    -DLIBR_INCLUDE_DIRS="${R_INCL}"  \
--    -DLIBR_DOC_DIR="${R_DOCS}"       \
--    -DRSTUDIO_USE_LIBCXX="Yes"       \
--    -DRSTUDIO_USE_SYSTEM_BOOST="Yes" \
--    -DRSTUDIO_BOOST_VERSION="1.56.0" \
-+cmake ../cpp -GXcode                           \
-+    -DLIBR_HOME="${R_HOME}"                    \
-+    -DLIBR_INCLUDE_DIRS="${R_INCL}"            \
-+    -DLIBR_DOC_DIR="${R_DOCS}"                 \
-+    -DRSTUDIO_USE_LIBCXX="Yes"                 \
-+    -DRSTUDIO_USE_SYSTEM_BOOST="Yes"           \
-+    -DRSTUDIO_BOOST_REQUESTED_VERSION="1.56.0" \
-     "$@"
- cmake ../cpp -DLIBR_LIBRARIES="${R_LIBS}/libR.dylib"
- cd ..
+--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.hpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.hpp	2018-11-17 21:24:35.295976381 +1100
+@@ -18,8 +18,7 @@
+ 
+ #include <session/SessionModuleContext.hpp>
+ 
+-#include <boost/signal.hpp>
+-
++#include <core/BoostSignals.hpp>
+ #include <core/json/Json.hpp>
+ 
+ #include <r/RSexp.hpp>
+@@ -99,7 +98,7 @@
+    bool hasErrors_;
+ 
+    std::vector<boost::shared_ptr<NotebookCapture> > captures_;
+-   std::vector<boost::signals::connection> connections_;
++   std::vector<RSTUDIO_BOOST_CONNECTION> connections_;
+ };
+ 
+ } // namespace notebook
+--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp	2018-11-17 21:24:35.295976381 +1100
+@@ -20,11 +20,12 @@
+ 
+ #include <boost/format.hpp>
+ #include <boost/foreach.hpp>
+-#include <boost/signals/connection.hpp>
+ 
+-#include <core/system/FileMonitor.hpp>
+-#include <core/StringUtils.hpp>
++#include <core/BoostSignals.hpp>
+ #include <core/Exec.hpp>
++#include <core/StringUtils.hpp>
++
++#include <core/system/FileMonitor.hpp>
+ 
+ #include <session/SessionModuleContext.hpp>
+ 
+--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp	2018-11-17 21:24:35.296976391 +1100
+@@ -18,8 +18,10 @@
+ #define SESSION_NOTEBOOK_PLOTS_HPP
+ 
+ #include <boost/function.hpp>
+-#include <boost/signals/connection.hpp>
++
++#include <core/BoostSignals.hpp>
+ #include <core/FilePath.hpp>
++
+ #include <r/RSexp.hpp>
+ 
+ #include "NotebookCapture.hpp"
+@@ -80,9 +82,9 @@
+ 
+    unsigned lastOrdinal_;
+ 
+-   boost::signals::connection onBeforeNewPlot_;
+-   boost::signals::connection onBeforeNewGridPage_;
+-   boost::signals::connection onNewPlot_;
++   RSTUDIO_BOOST_CONNECTION onBeforeNewPlot_;
++   RSTUDIO_BOOST_CONNECTION onBeforeNewGridPage_;
++   RSTUDIO_BOOST_CONNECTION onNewPlot_;
+ 
+    double width_;
+    double height_;
+--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp	2018-11-17 21:24:35.296976391 +1100
+@@ -87,7 +87,7 @@
+       pInput_->enque(kThreadQuitCommand);
+ 
+       // unregister handlers
+-      BOOST_FOREACH(boost::signals::connection connection, handlers_)
++      BOOST_FOREACH(RSTUDIO_BOOST_CONNECTION connection, handlers_)
+       {
+          connection.disconnect();
+       }
+@@ -651,7 +651,7 @@
+    boost::shared_ptr<ChunkExecContext> execContext_;
+ 
+    // registered signal handlers
+-   std::vector<boost::signals::connection> handlers_;
++   std::vector<RSTUDIO_BOOST_CONNECTION> handlers_;
+ 
+    // the thread which submits console input, and the queue which feeds it
+    boost::thread console_;
+--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp	2018-11-17 21:24:35.296976391 +1100
+@@ -18,7 +18,8 @@
+ #define SESSION_RMARKDOWN_NOTEBOOK_HPP
+ 
+ #include <ctime>
+-#include <boost/signals.hpp>
++
++#include <core/BoostSignals.hpp>
+ #include <core/json/Json.hpp>
+ 
+ #define kChunkLibDir "lib"
+@@ -76,24 +77,24 @@
+ struct Events : boost::noncopyable
+ {
+    // Document {0}, chunk {1} from context id {3} execution completed
+-   boost::signal<void(const std::string&, const std::string&,
++   RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&,
+                       const std::string&)> 
+                 onChunkExecCompleted;
+ 
+    // Document {0}, chunk {1} had console output of type {2} and text {3}
+-   boost::signal<void(const std::string&, const std::string&, int, 
++   RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&, int, 
+                 const std::string&)>
+                 onChunkConsoleOutput;
+ 
+-   boost::signal<void(const core::FilePath&, const core::FilePath&, 
++   RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&, 
+                       const core::json::Value& metadata, unsigned ordinal)> 
+                          onPlotOutput;
+-   boost::signal<void(const core::FilePath&, const core::FilePath&,
++   RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&,
+                       const core::json::Value& metadata)> onHtmlOutput;
+-   boost::signal<void(const core::json::Object&)> onErrorOutput;
+-   boost::signal<void(const core::FilePath&, const core::FilePath&,
++   RSTUDIO_BOOST_SIGNAL<void(const core::json::Object&)> onErrorOutput;
++   RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&,
+                       const core::json::Value& metadata)> onDataOutput;
+-   boost::signal<void(Condition condition, const std::string& message)> 
++   RSTUDIO_BOOST_SIGNAL<void(Condition condition, const std::string& message)> 
+                          onCondition;
+ };
+ 
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch
new file mode 100644
index 000000000000..961723fd224f
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch
@@ -0,0 +1,167 @@
+--- rstudio-1.1.463-orig/src/cpp/CMakeLists.txt	2018-11-17 21:24:35.285976284 +1100
++++ rstudio-1.1.463/src/cpp/CMakeLists.txt	2018-11-17 21:41:02.712507842 +1100
+@@ -175,6 +175,9 @@
+       set(Boost_USE_STATIC_LIBS ON)
+       set(BOOST_INCLUDEDIR  ${RSTUDIO_TOOLS_BOOST}/include)
+       find_package(Boost ${BOOST_VERSION} REQUIRED)
++      if(NOT Boost_VERSION VERSION_LESS 1.69.0)
++         list(REMOVE_ITEM BOOST_LIBS signals)
++      endif()
+ 
+       # define library list manually (find_package doesn't always pick them up)
+       set(BOOST_LIB_DIR ${RSTUDIO_TOOLS_BOOST}/lib)
+@@ -184,11 +187,15 @@
+       message(STATUS "Using RStudio-provided Boost ${BOOST_VERSION}")
+    else()
+       add_definitions(-DRSTUDIO_BOOST_NAMESPACE=boost)
++      find_package(Boost ${BOOST_VERSION} REQUIRED)
++      if(NOT Boost_VERSION VERSION_LESS 1.69.0)
++         list(REMOVE_ITEM BOOST_LIBS signals)
++      endif()
+       find_package(Boost ${BOOST_VERSION} REQUIRED COMPONENTS ${BOOST_LIBS})
+       message(STATUS "Using system Boost ${BOOST_VERSION}")
+    endif()
+ 
+-   # WIN32 BOOST
++# WIN32 BOOST
+ else()
+    # hard-code to our own prebuilt boost libs
+    add_definitions(-DRSTUDIO_BOOST_NAMESPACE=rstudio_boost)
+@@ -211,14 +218,14 @@
+ # allow opt-in to using Boost.Signals2
+ # TODO: remove this in RStudio v1.3 and port to signals2
+ if(NOT RSTUDIO_BOOST_SIGNALS_VERSION)
+-   if (BOOST_VERSION VERSION_LESS 1.69.0)
++   if (Boost_VERSION VERSION_LESS 1.69.0)
+       set(RSTUDIO_BOOST_SIGNALS_VERSION 1)
+    else()
+       set(RSTUDIO_BOOST_SIGNALS_VERSION 2)
+    endif()
+ endif()
+ 
+-message(STATUS "Using Booost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}")
++message(STATUS "Using Boost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}")
+ add_definitions(-DRSTUDIO_BOOST_SIGNALS_VERSION=${RSTUDIO_BOOST_SIGNALS_VERSION})
+ 
+ # add boost as system include directory
+--- rstudio-1.1.463-orig/src/cpp/core/include/core/r_util/RFunctionInformation.hpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/core/include/core/r_util/RFunctionInformation.hpp	2018-11-17 21:41:02.713507852 +1100
+@@ -75,9 +75,9 @@
+    const std::string& name() const { return name_; }
+    const boost::optional<std::string>& defaultValue() const { return defaultValue_; }
+    boost::tribool hasDefault() const { return hasDefault_; }
+-   bool isUsed() const { return isUsed_; }
++   bool isUsed() const { return bool(isUsed_); }
+    void setIsUsed(bool value) { isUsed_ = value; }
+-   bool isMissingnessHandled() const { return isMissingnessHandled_; }
++   bool isMissingnessHandled() const { return bool(isMissingnessHandled_); }
+    void setMissingnessHandled(bool value) { isMissingnessHandled_ = value; }
+    
+ private:
+@@ -130,7 +130,7 @@
+    
+    bool isPrimitive()
+    {
+-      return isPrimitive_ == true;
++      return bool(isPrimitive_);
+    }
+    
+    void setIsPrimitive(bool isPrimitive)
+--- rstudio-1.1.463-orig/src/cpp/session/modules/SessionRParser.cpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/session/modules/SessionRParser.cpp	2018-11-17 21:41:02.714507862 +1100
+@@ -390,7 +390,7 @@
+    if (!failed)
+    {
+       DEBUG("--- Found function in pkgInfo index: " << *fnInfo.binding());
+-      return fnInfo.performsNse();
++      return bool(fnInfo.performsNse());
+    }
+    
+    // Handle some special cases first.
+--- rstudio-1.1.463-orig/src/tools/clang-ubsan-build	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/tools/clang-ubsan-build	2018-11-17 21:41:02.714507862 +1100
+@@ -10,19 +10,19 @@
+ 
+ : ${RSTUDIO_USE_LIBCXX="Yes"}
+ : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"}
+-: ${RSTUDIO_BOOST_VERSION="1.56.0"}
++: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.56.0"}
+ 
+ mkdir -p "${BUILD_DIR}"
+ cd "${BUILD_DIR}"
+-cmake ../cpp                                                 \
+-    -DLIBR_HOME="${R_HOME}"                                  \
+-    -DCMAKE_C_COMPILER="${CC}"                               \
+-    -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}"                \
+-    -DCMAKE_CXX_COMPILER="${CXX}"                            \
+-    -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}"              \
+-    -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}"             \
+-    -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \
+-    -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}"       \
++cmake ../cpp                                                               \
++    -DLIBR_HOME="${R_HOME}"                                                \
++    -DCMAKE_C_COMPILER="${CC}"                                             \
++    -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}"                              \
++    -DCMAKE_CXX_COMPILER="${CXX}"                                          \
++    -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}"                            \
++    -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}"                           \
++    -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}"               \
++    -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \
+     "$@"
+ cd ..
+ 
+--- rstudio-1.1.463-orig/src/tools/gcc-ubsan-build	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/tools/gcc-ubsan-build	2018-11-17 21:41:02.715507871 +1100
+@@ -19,19 +19,19 @@
+ # NOTE: Boost 1.50.0 not compatible with gcc-6
+ : ${RSTUDIO_USE_LIBCXX="No"}
+ : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"}
+-: ${RSTUDIO_BOOST_VERSION="1.54.0"}
++: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.54.0"}
+ 
+ mkdir -p "${BUILD_DIR}"
+ cd "${BUILD_DIR}"
+-cmake ../cpp                                                 \
+-    -DLIBR_HOME="${R_HOME}"                                  \
+-    -DCMAKE_C_COMPILER="${CC}"                               \
+-    -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}"                \
+-    -DCMAKE_CXX_COMPILER="${CXX}"                            \
+-    -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}"              \
+-    -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}"             \
+-    -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \
+-    -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}"       \
++cmake ../cpp                                                               \
++    -DLIBR_HOME="${R_HOME}"                                                \
++    -DCMAKE_C_COMPILER="${CC}"                                             \
++    -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}"                              \
++    -DCMAKE_CXX_COMPILER="${CXX}"                                          \
++    -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}"                            \
++    -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}"                           \
++    -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}"               \
++    -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \
+     "$@"
+ cd ..
+ 
+--- rstudio-1.1.463-orig/src/tools/xcode-ubsan-build	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/tools/xcode-ubsan-build	2018-11-17 21:41:02.715507871 +1100
+@@ -15,13 +15,13 @@
+ # sanitizers released with newer versions of clang)
+ mkdir -p "${BUILD_DIR}"
+ cd "${BUILD_DIR}"
+-cmake ../cpp -GXcode                 \
+-    -DLIBR_HOME="${R_HOME}"          \
+-    -DLIBR_INCLUDE_DIRS="${R_INCL}"  \
+-    -DLIBR_DOC_DIR="${R_DOCS}"       \
+-    -DRSTUDIO_USE_LIBCXX="Yes"       \
+-    -DRSTUDIO_USE_SYSTEM_BOOST="Yes" \
+-    -DRSTUDIO_BOOST_VERSION="1.56.0" \
++cmake ../cpp -GXcode                           \
++    -DLIBR_HOME="${R_HOME}"                    \
++    -DLIBR_INCLUDE_DIRS="${R_INCL}"            \
++    -DLIBR_DOC_DIR="${R_DOCS}"                 \
++    -DRSTUDIO_USE_LIBCXX="Yes"                 \
++    -DRSTUDIO_USE_SYSTEM_BOOST="Yes"           \
++    -DRSTUDIO_BOOST_REQUESTED_VERSION="1.56.0" \
+     "$@"
+ cmake ../cpp -DLIBR_LIBRARIES="${R_LIBS}/libR.dylib"
+ cd ..
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch
new file mode 100644
index 000000000000..320b823355a3
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch
@@ -0,0 +1,46 @@
+--- rstudio-1.1.463-orig/src/cpp/ext/websocketpp/transport/asio/connection.hpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/ext/websocketpp/transport/asio/connection.hpp	2019-03-30 20:14:40.634057634 +1100
+@@ -296,7 +296,11 @@
+      */
+     timer_ptr set_timer(long duration, timer_handler callback) {
+         timer_ptr new_timer = lib::make_shared<boost::asio::deadline_timer>(
++#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000
++            *m_io_service,
++#else
+             lib::ref(*m_io_service),
++#endif
+             boost::posix_time::milliseconds(duration)
+         );
+ 
+--- rstudio-1.1.463-orig/src/cpp/ext/websocketpp/transport/asio/endpoint.hpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/ext/websocketpp/transport/asio/endpoint.hpp	2019-03-30 20:14:36.319021594 +1100
+@@ -184,7 +184,12 @@
+         m_io_service = ptr;
+         m_external_io_service = true;
+         m_acceptor = lib::make_shared<boost::asio::ip::tcp::acceptor>(
+-            lib::ref(*m_io_service));
++#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000
++            *m_io_service
++#else
++            lib::ref(*m_io_service)
++#endif
++        );
+ 
+         m_state = READY;
+         ec = lib::error_code();
+--- rstudio-1.1.463-orig/src/cpp/ext/websocketpp/transport/asio/security/none.hpp	2018-10-25 09:42:55.000000000 +1100
++++ rstudio-1.1.463/src/cpp/ext/websocketpp/transport/asio/security/none.hpp	2019-03-30 20:15:22.353406097 +1100
+@@ -167,7 +167,12 @@
+         }
+ 
+         m_socket = lib::make_shared<boost::asio::ip::tcp::socket>(
+-            lib::ref(*service));
++#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000
++            *service
++#else
++            lib::ref(*service)
++#endif
++        );
+ 
+         m_state = READY;
+ 
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.70.0_p1.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.70.0_p1.patch
new file mode 100644
index 000000000000..1ec458bb8698
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.70.0_p1.patch
@@ -0,0 +1,46 @@
+--- rstudio-1.2.1335-orig/src/cpp/ext/websocketpp/transport/asio/connection.hpp	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/ext/websocketpp/transport/asio/connection.hpp	2019-08-20 22:38:53.808923305 +1000
+@@ -296,7 +296,11 @@
+      */
+     timer_ptr set_timer(long duration, timer_handler callback) {
+         timer_ptr new_timer = lib::make_shared<boost::asio::deadline_timer>(
++#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000
++            *m_io_service,
++#else
+             lib::ref(*m_io_service),
++#endif
+             boost::posix_time::milliseconds(duration)
+         );
+ 
+--- rstudio-1.2.1335-orig/src/cpp/ext/websocketpp/transport/asio/endpoint.hpp	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/ext/websocketpp/transport/asio/endpoint.hpp	2019-08-20 22:38:53.822923358 +1000
+@@ -184,7 +184,12 @@
+         m_io_service = ptr;
+         m_external_io_service = true;
+         m_acceptor = lib::make_shared<boost::asio::ip::tcp::acceptor>(
+-            lib::ref(*m_io_service));
++#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000
++            *m_io_service
++#else
++            lib::ref(*m_io_service)
++#endif
++        );
+ 
+         m_state = READY;
+         ec = lib::error_code();
+--- rstudio-1.2.1335-orig/src/cpp/ext/websocketpp/transport/asio/security/none.hpp	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/ext/websocketpp/transport/asio/security/none.hpp	2019-08-20 22:38:53.823923362 +1000
+@@ -167,7 +167,12 @@
+         }
+ 
+         m_socket = lib::make_shared<boost::asio::ip::tcp::socket>(
+-            lib::ref(*service));
++#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000
++            *service
++#else
++            lib::ref(*service)
++#endif
++        );
+ 
+         m_state = READY;
+ 
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.70.0_p2.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.70.0_p2.patch
new file mode 100644
index 000000000000..eed2c5c955cb
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.70.0_p2.patch
@@ -0,0 +1,17 @@
+--- rstudio-1.2.1335-orig/src/cpp/core/include/core/http/TcpIpAsyncConnector.hpp	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/core/include/core/http/TcpIpAsyncConnector.hpp	2019-04-09 22:08:45.331273559 +1000
+@@ -77,7 +77,13 @@
+       {
+          // start a timer that will cancel any outstanding asynchronous operations
+          // when it elapses if the connection operation has not succeeded
+-         pConnectionTimer_.reset(new boost::asio::deadline_timer(resolver_.get_io_service(), timeout));
++         pConnectionTimer_.reset(new boost::asio::deadline_timer(
++#if BOOST_VERSION >= 107000
++                                   resolver_.get_executor(),
++#else
++                                   resolver_.get_io_service(),
++#endif
++                                   timeout));
+          pConnectionTimer_->async_wait(boost::bind(&TcpIpAsyncConnector::onConnectionTimeout,
+                                                    TcpIpAsyncConnector::shared_from_this(),
+                                                    boost::asio::placeholders::error));
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-core.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-core.patch
new file mode 100644
index 000000000000..2c4374bb8045
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-core.patch
@@ -0,0 +1,160 @@
+--- rstudio-1.2.1335-orig/src/cpp/session/SessionClientInit.cpp	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/session/SessionClientInit.cpp	2019-04-09 18:15:37.746363789 +1000
+@@ -87,13 +87,13 @@
+       boost::shared_ptr<http::Cookie>* pCookie)
+ {
+    // extract the base URL
+-   json::JsonRpcRequest request;
++   core::json::JsonRpcRequest request;
+    Error error = parseJsonRpcRequest(ptrConnection->request().body(), &request);
+    if (error)
+       return error;
+    std::string baseURL;
+ 
+-   error = json::readParams(request.params, &baseURL);
++   error = core::json::readParams(request.params, &baseURL);
+    if (error)
+       return error;
+ 
+@@ -161,7 +161,7 @@
+    }
+ 
+    // prepare session info 
+-   json::Object sessionInfo ;
++   core::json::Object sessionInfo ;
+    sessionInfo["clientId"] = clientId;
+    sessionInfo["mode"] = options.programMode();
+    
+@@ -175,8 +175,8 @@
+    }
+ 
+    // temp dir
+-   FilePath tempDir = rstudio::r::session::utils::tempDir();
+-   Error error = tempDir.ensureDirectory();
++   core::FilePath tempDir = rstudio::r::session::utils::tempDir();
++   core::Error error = tempDir.ensureDirectory();
+    if (error)
+       LOG_ERROR(error);
+    sessionInfo["temp_dir"] = tempDir.absolutePath();
+@@ -194,12 +194,12 @@
+    sessionInfo["prompt"] = rstudio::r::options::getOption<std::string>("prompt");
+ 
+    // client state
+-   json::Object clientStateObject;
++   core::json::Object clientStateObject;
+    rstudio::r::session::clientState().currentState(&clientStateObject);
+    sessionInfo["client_state"] = clientStateObject;
+    
+    // source documents
+-   json::Array jsonDocs;
++   core::json::Array jsonDocs;
+    error = modules::source::clientInitDocuments(&jsonDocs);
+    if (error)
+       LOG_ERROR(error);
+@@ -224,7 +224,7 @@
+    if (resumed)
+    {
+       // console actions
+-      json::Object actionsObject;
++     core::json::Object actionsObject;
+       consoleActions.asJson(&actionsObject);
+       sessionInfo["console_actions"] = actionsObject;
+    }
+@@ -290,12 +290,12 @@
+    }
+    else
+    {
+-      sessionInfo["active_project_file"] = json::Value();
+-      sessionInfo["project_ui_prefs"] = json::Value();
+-      sessionInfo["project_open_docs"] = json::Value();
++      sessionInfo["active_project_file"] = core::json::Value();
++      sessionInfo["project_ui_prefs"] = core::json::Value();
++      sessionInfo["project_open_docs"] = core::json::Value();
+       sessionInfo["project_supports_sharing"] = false;
+       sessionInfo["project_owned_by_user"] = false;
+-      sessionInfo["project_user_data_directory"] = json::Value();
++      sessionInfo["project_user_data_directory"] = core::json::Value();
+    }
+ 
+    sessionInfo["system_encoding"] = std::string(::locale2charset(NULL));
+@@ -332,20 +332,20 @@
+       sessionInfo["build_tools_bookdown_website"] =
+                               module_context::isBookdownWebsite();
+ 
+-      FilePath buildTargetDir = projects::projectContext().buildTargetPath();
++      core::FilePath buildTargetDir = projects::projectContext().buildTargetPath();
+       if (!buildTargetDir.empty())
+       {
+          sessionInfo["build_target_dir"] = module_context::createAliasedPath(
+                                                                 buildTargetDir);
+-         sessionInfo["has_pkg_src"] = (type == r_util::kBuildTypePackage) &&
++         sessionInfo["has_pkg_src"] = (type == core::r_util::kBuildTypePackage) &&
+                                       buildTargetDir.childPath("src").exists();
+          sessionInfo["has_pkg_vig"] =
+-               (type == r_util::kBuildTypePackage) &&
++               (type == core::r_util::kBuildTypePackage) &&
+                buildTargetDir.childPath("vignettes").exists();
+       }
+       else
+       {
+-         sessionInfo["build_target_dir"] = json::Value();
++         sessionInfo["build_target_dir"] = core::json::Value();
+          sessionInfo["has_pkg_src"] = false;
+          sessionInfo["has_pkg_vig"] = false;
+       }
+@@ -353,9 +353,9 @@
+    }
+    else
+    {
+-      sessionInfo["build_tools_type"] = r_util::kBuildTypeNone;
++      sessionInfo["build_tools_type"] = core::r_util::kBuildTypeNone;
+       sessionInfo["build_tools_bookdown_website"] = false;
+-      sessionInfo["build_target_dir"] = json::Value();
++      sessionInfo["build_target_dir"] = core::json::Value();
+       sessionInfo["has_pkg_src"] = false;
+       sessionInfo["has_pkg_vig"] = false;
+    }
+@@ -364,7 +364,7 @@
+    sessionInfo["presentation_commands"] = options.allowPresentationCommands();
+ 
+    sessionInfo["tutorial_api_available"] = false;
+-   sessionInfo["tutorial_api_client_origin"] = json::Value();
++   sessionInfo["tutorial_api_client_origin"] = core::json::Value();
+ 
+    sessionInfo["build_state"] = modules::build::buildStateAsJson();
+    sessionInfo["devtools_installed"] = module_context::isMinimumDevtoolsInstalled();
+@@ -375,7 +375,7 @@
+ 
+    // console history -- we do this at the end because
+    // restoreBuildRestartContext may have reset it
+-   json::Array historyArray;
++   core::json::Array historyArray;
+    rstudio::r::session::consoleHistory().asJson(&historyArray);
+    sessionInfo["console_history"] = historyArray;
+    sessionInfo["console_history_capacity"] =
+@@ -447,14 +447,14 @@
+ 
+    sessionInfo["multi_session"] = options.multiSession();
+ 
+-   json::Object rVersionsJson;
++   core::json::Object rVersionsJson;
+    rVersionsJson["r_version"] = module_context::rVersion();
+    rVersionsJson["r_version_label"] = module_context::rVersionLabel();
+    rVersionsJson["r_home_dir"] = module_context::rHomeDir();
+    sessionInfo["r_versions_info"] = rVersionsJson;
+ 
+    sessionInfo["show_user_home_page"] = options.showUserHomePage();
+-   sessionInfo["user_home_page_url"] = json::Value();
++   sessionInfo["user_home_page_url"] = core::json::Value();
+    
+    sessionInfo["r_addins"] = modules::r_addins::addinRegistryAsJson();
+    sessionInfo["package_provided_extensions"] = modules::ppe::indexer().getPayload();
+@@ -491,7 +491,7 @@
+ 
+    // create response  (we always set kEventsPending to false so that the client
+    // won't poll for events until it is ready)
+-   json::JsonRpcResponse jsonRpcResponse;
++   core::json::JsonRpcResponse jsonRpcResponse;
+    jsonRpcResponse.setField(kEventsPending, "false");
+    jsonRpcResponse.setResult(sessionInfo);
+ 
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch
new file mode 100644
index 000000000000..e38f5e0c4448
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch
@@ -0,0 +1,13 @@
+--- rstudio-1.2.1335-orig/src/cpp/server_core/SecureKeyFile.cpp	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/server_core/SecureKeyFile.cpp	2019-04-09 20:47:57.943317208 +1000
+@@ -68,8 +68,8 @@
+          return error;
+ 
+       // change mode it so it is only readable and writeable by this user
+-      if (changeFileMode(secureKeyPath,
+-                         core::system::UserReadWriteMode) < 0)
++      if (!!changeFileMode(secureKeyPath,
++                           core::system::UserReadWriteMode))
+       {
+          return systemError(errno, ERROR_LOCATION);
+       }
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-linker_flags.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-linker_flags.patch
new file mode 100644
index 000000000000..e07ead68969e
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-linker_flags.patch
@@ -0,0 +1,11 @@
+--- rstudio-1.2.1335-orig/src/cpp/CMakeLists.txt	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/CMakeLists.txt	2019-04-09 17:58:59.926559001 +1000
+@@ -117,7 +117,7 @@
+          add_definitions(-O0)
+          add_definitions(-D_GLIBCXX_ASSERTIONS)
+       endif()
+-      set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -pie -Wl,-z,relro,-z,now")
++      set(CMAKE_EXE_LINKER_FLAGS "-pie -Wl,-z,relro,-z,now ${CMAKE_EXE_LINKER_FLAGS}")
+    endif()
+ 
+    # other useful gcc diagnostics
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch
new file mode 100644
index 000000000000..e2fe83867bcd
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch
@@ -0,0 +1,32 @@
+--- rstudio-1.2.1335-orig/src/cpp/session/CMakeLists.txt	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/session/CMakeLists.txt	2019-04-09 17:22:59.210201624 +1000
+@@ -25,9 +25,6 @@
+ if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-26")
+   message(FATAL_ERROR "Mathjax 2.6 not found (re-run install-dependencies script to install)")
+ endif()
+-if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc")
+-  message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)")
+-endif()
+ 
+ # we often install embedded versions of these packages but don't do so currently
+ 
+@@ -479,19 +476,6 @@
+ install(DIRECTORY "resources/connections"
+         DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources)
+ 
+-# install pandoc
+-if(WIN32)
+-   set(PANDOC_VERSION "2.6" CACHE INTERNAL "Pandoc version")
+-else()
+-   set(PANDOC_VERSION "2.3.1" CACHE INTERNAL "Pandoc version")
+-endif()
+-
+-set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/${PANDOC_VERSION}")
+-file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*")
+-install(FILES ${PANDOC_FILES}
+-        PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+-        DESTINATION  ${RSTUDIO_INSTALL_BIN}/pandoc)
+-
+ # install rmarkdown package
+ # file(GLOB RMARKDOWN_PACKAGE "${RSTUDIO_DEPENDENCIES_DIR}/common/rmarkdown*.tar.gz")
+ # install(FILES ${RMARKDOWN_PACKAGE}
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-paths.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-paths.patch
new file mode 100644
index 000000000000..ba66ef9f0ea1
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-paths.patch
@@ -0,0 +1,118 @@
+--- rstudio-1.2.1335-orig/CMakeGlobals.txt	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/CMakeGlobals.txt	2019-04-09 17:10:07.680657631 +1000
+@@ -161,7 +161,7 @@
+    set(RSTUDIO_INSTALL_SUPPORTING RStudio.app/Contents/Resources)
+ else()
+    set(RSTUDIO_INSTALL_BIN bin)
+-   set(RSTUDIO_INSTALL_SUPPORTING .)
++   set(RSTUDIO_INSTALL_SUPPORTING ${DISTRO_SHARE})
+ endif()
+ 
+ # if the install prefix is /usr/local then tweak as appropriate
+--- rstudio-1.2.1335-orig/src/cpp/server/CMakeLists.txt	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/server/CMakeLists.txt	2019-04-09 16:54:34.740739744 +1000
+@@ -194,7 +194,7 @@
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT})
+    install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}
+-           DESTINATION ${RSERVER_INITD_DEBIAN_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_DEBIAN_DIR})
+ 
+    # install configured redhat init.d script
+    set(RSERVER_INITD_REDHAT_DIR "extras/init.d/redhat")
+@@ -202,7 +202,7 @@
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT})
+    install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}
+-           DESTINATION ${RSERVER_INITD_REDHAT_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_REDHAT_DIR})
+ 
+    # install configured suse init.d script
+    set(RSERVER_INITD_SUSE_DIR "extras/init.d/suse")
+@@ -210,13 +210,13 @@
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_SUSE_SCRIPT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT})
+    install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT}
+-           DESTINATION ${RSERVER_INITD_SUSE_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_SUSE_DIR})
+ 
+    # install pam profile
+    set(RSERVER_PAM_DIR "extras/pam")
+    set(RSERVER_PAM_PROFILE "${RSERVER_PAM_DIR}/rstudio")
+    install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_PAM_PROFILE}
+-           DESTINATION ${RSERVER_PAM_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_PAM_DIR})
+ 
+    # install configured upstart profile
+    set(RSERVER_UPSTART_DIR "extras/upstart")
+@@ -224,12 +224,12 @@
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE})
+    install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE}
+-           DESTINATION ${RSERVER_UPSTART_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+    set(RSERVER_UPSTART_PROFILE_REDHAT "${RSERVER_UPSTART_DIR}/rstudio-server.redhat.conf")
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT})
+    install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}
+-           DESTINATION ${RSERVER_UPSTART_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+ 
+     # install configured systemd profile
+    set(RSERVER_SYSTEMD_DIR "extras/systemd")
+--- rstudio-1.2.1335-orig/src/cpp/server/ServerOptions.cpp	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/server/ServerOptions.cpp	2019-04-09 16:54:34.740739744 +1000
+@@ -389,8 +389,8 @@
+ 
+    // convert relative paths by completing from the system installation
+    // path (this allows us to be relocatable)
+-   resolvePath(resourcePath, &wwwLocalPath_);
+-   resolvePath(resourcePath, &wwwSymbolMapsPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
+    resolvePath(binaryPath, &authPamHelperPath_);
+    resolvePath(binaryPath, &rsessionPath_);
+    resolvePath(binaryPath, &rldpathPath_);
+--- rstudio-1.2.1335-orig/src/cpp/session/SessionOptions.cpp	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/session/SessionOptions.cpp	2019-04-09 17:17:06.035206050 +1000
+@@ -53,7 +53,7 @@
+ namespace session {  
+ 
+ namespace {
+-const char* const kDefaultPandocPath = "bin/pandoc";
++const char* const kDefaultPandocPath = "bin";
+ const char* const kDefaultPostbackPath = "bin/postback/rpostback";
+ const char* const kDefaultRsclangPath = "bin/rsclang";
+ 
+@@ -569,14 +569,14 @@
+    }
+    
+    // convert relative paths by completing from the app resource path
+-   resolvePath(resourcePath_, &rResourcesPath_);
+-   resolvePath(resourcePath_, &agreementFilePath_);
+-   resolvePath(resourcePath_, &wwwLocalPath_);
+-   resolvePath(resourcePath_, &wwwSymbolMapsPath_);
+-   resolvePath(resourcePath_, &coreRSourcePath_);
+-   resolvePath(resourcePath_, &modulesRSourcePath_);
+-   resolvePath(resourcePath_, &sessionLibraryPath_);
+-   resolvePath(resourcePath_, &sessionPackageArchivesPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &rResourcesPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &agreementFilePath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwLocalPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &coreRSourcePath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &modulesRSourcePath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionLibraryPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionPackageArchivesPath_);
+    resolvePostbackPath(resourcePath_, &rpostbackPath_);
+ #ifdef _WIN32
+    resolvePath(resourcePath_, &consoleIoPath_);
+@@ -601,7 +601,7 @@
+    }
+    winptyPath_ = pty.complete(completion).absolutePath();
+ #endif // _WIN32
+-   resolvePath(resourcePath_, &hunspellDictionariesPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &hunspellDictionariesPath_);
+    resolvePath(resourcePath_, &mathjaxPath_);
+    resolvePath(resourcePath_, &libclangHeadersPath_);
+    resolvePandocPath(resourcePath_, &pandocPath_);
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch
new file mode 100644
index 000000000000..e72df553eeb6
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch
@@ -0,0 +1,53 @@
+--- rstudio-1.2.1335-orig/src/gwt/build.xml	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/gwt/build.xml	2019-04-09 16:44:15.089471934 +1000
+@@ -34,6 +34,7 @@
+    <property name="gwt.extra.args" value=""/>
+    <property name="gwt.main.module" value="org.rstudio.studio.RStudio"/>
+    <property name="ace.bin" value="${src.dir}/org/rstudio/studio/client/workbench/views/source/editors/text/ace"/>
++   <property environment="env"/>
+ 
+    <path id="project.class.path">
+      <pathelement location="${build.dir}"/>
+@@ -112,8 +113,10 @@
+             <pathelement location="${src.dir}"/>
+             <path refid="project.class.path"/>
+          </classpath>
++         <jvmarg value="-Duser.home=${env.T}"/>
+          <!-- add jvmarg -Xss16M or similar if you see a StackOverflowError -->
+          <jvmarg value="-Xmx1536M"/>
++         <jvmarg value="-Djava.util.prefs.userRoot=${env.T}"/>
+          <arg value="-war"/>
+          <arg value="${www.dir}"/>
+          <arg value="-localWorkers"/>
+@@ -154,6 +157,7 @@
+             <pathelement location="${src.dir}"/>
+             <path refid="project.class.path"/>
+          </classpath>
++         <jvmarg value="-Duser.home=${env.T}"/>
+          <jvmarg value="-Xmx2048M"/>
+          <arg value="-style"/>
+          <arg value="PRETTY"/>
+@@ -176,6 +180,7 @@
+             <pathelement location="src"/>
+             <path refid="project.class.path"/>
+          </classpath>
++         <jvmarg value="-Duser.home=${env.T}"/>
+          <jvmarg value="-Xmx2048M"/>
+          <arg value="-style"/>
+          <arg value="PRETTY"/>
+@@ -202,6 +207,7 @@
+             <pathelement location="src"/>
+             <path refid="project.class.path"/>
+          </classpath>
++         <jvmarg value="-Duser.home=${env.T}"/>
+          <jvmarg value="-Xmx2048M"/>
+       	<arg value="-src"/>
+       	<arg value = "src"/>
+@@ -237,6 +243,7 @@
+             <pathelement location="${test.dir}"/>
+             <pathelement location="${src.dir}"/>
+         </classpath>
++        <jvmarg value="-Duser.home=${env.T}"/>
+         <classpath refid="project.class.path"/>
+         <classpath refid="unittest.class.path"/>
+         <arg value="org.rstudio.studio.client.RStudioUnitTestSuite"/>
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-qtsingleapplication.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-qtsingleapplication.patch
new file mode 100644
index 000000000000..a59fa02f1d2c
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-qtsingleapplication.patch
@@ -0,0 +1,60 @@
+--- rstudio-1.2.1335-orig/src/cpp/desktop/CMakeLists.txt	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/desktop/CMakeLists.txt	2019-04-09 18:04:57.783616412 +1000
+@@ -140,6 +140,13 @@
+ get_filename_component(QT_LIBRARY_PATH "${QT_BIN_DIR}/../lib"     ABSOLUTE CACHE)
+ get_filename_component(QT_INSTALL_PATH "${QT_BIN_DIR}/.."         ABSOLUTE CACHE)
+ 
++find_path(QTSINGLEAPPLIB_INCLUDE_DIR NAMES QtSingleApplication
++  PATH_SUFFIXES QtSolutions
++  PATHS
++  /usr/include/qt5)
++find_library(QTSINGLEAPPLIB Qt5Solutions_SingleApplication-2.6
++  libQt5Solutions_SingleApplication-2.6)
++
+ # disable clang warnings for qt sources
+ if(APPLE)
+    add_definitions(-Wno-unused-private-field
+@@ -158,7 +165,6 @@
+ 
+ set(MOC_DESKTOP_HEADER_FILES ${DESKTOP_HEADER_FILES})
+ list(REMOVE_ITEM MOC_DESKTOP_HEADER_FILES
+-  ${CMAKE_CURRENT_SOURCE_DIR}/3rdparty/qtsingleapplication/qtlockedfile.h
+   ${CMAKE_CURRENT_SOURCE_DIR}/DesktopDetectRHome.hpp
+   ${CMAKE_CURRENT_SOURCE_DIR}/DesktopOptions.hpp
+   ${CMAKE_CURRENT_SOURCE_DIR}/DesktopRVersion.hpp
+@@ -224,8 +230,6 @@
+   DesktopSlotBinders.cpp
+   DesktopSubMenu.cpp
+   DesktopSynctex.cpp
+-  3rdparty/qtsingleapplication/qtsingleapplication.cpp
+-  3rdparty/qtsingleapplication/qtlocalpeer.cpp
+ )
+ 
+ if(WIN32)
+@@ -280,6 +284,7 @@
+   ${CORE_SOURCE_DIR}/include
+   ${CMAKE_CURRENT_SOURCE_DIR}
+   ${CMAKE_CURRENT_BINARY_DIR}
++  ${QTSINGLEAPPLIB_INCLUDE_DIR}
+   ${TESTS_INCLUDE_DIR}
+ )
+ 
+@@ -384,6 +389,7 @@
+    # set link dependencies
+    target_link_libraries(rstudio
+       ${RSTUDIO_QTMODULES}
++      ${QTSINGLEAPPLIB}
+       ${QT_LIBRARIES}
+       ${Boost_LIBRARIES}
+       rstudio-core
+--- rstudio-1.2.1335-orig/src/cpp/desktop/DesktopPosixApplication.hpp	2019-03-28 16:08:20.000000000 +1100
++++ rstudio-1.2.1335/src/cpp/desktop/DesktopPosixApplication.hpp	2019-04-09 18:01:39.333920927 +1000
+@@ -16,7 +16,7 @@
+ #ifndef DESKTOP_POSIX_APPLICATION_HPP
+ #define DESKTOP_POSIX_APPLICATION_HPP
+ 
+-#include "3rdparty/qtsingleapplication/QtSingleApplication"
++#include <QtSingleApplication>
+ 
+ #include "DesktopApplicationLaunch.hpp"
+ 
diff --git a/sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild b/sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild
new file mode 100644
index 000000000000..86b6db8da4ba
--- /dev/null
+++ b/sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild
@@ -0,0 +1,255 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils
+
+# TODO
+# * package gin and gwt
+# * use dict from tree, linguas
+# * do src_test (use junit from tree?)
+
+# update from scripts in dependencies/common
+# egrep '(GWT_SDK_VER=|GIN_VER=|SELENIUM_VER=|CHROMEDRIVER_VER=)' dependencies/common/install-gwt
+GWT_VER=2.7.0
+GIN_VER=1.5
+SELENIUM_VER=2.37.0
+CHROMEDRIVER_VER=2.7
+# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc
+PANDOC_VER=1.19.2.1
+# ls dependencies/common/*.tar.gz
+PACKRAT_VER=0.98.1000
+RMARKDOWN_VER=0.98.1000
+SHINYAPPS_VER=0.98.1000
+RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0
+
+DESCRIPTION="IDE for the R language"
+HOMEPAGE="
+	http://www.rstudio.org
+	https://github.com/rstudio/rstudio/"
+SRC_URI="
+	https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
+	https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip
+	https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip
+	https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip
+	https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar
+	https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux
+	https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
+	https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz
+	https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz
+	https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz
+	https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz
+"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="dedicated libressl server"
+
+QT_VER=5.4
+QT_SLOT=5
+RDEPEND="
+	>=app-text/pandoc-${PANDOC_VER}
+	dev-haskell/pandoc-citeproc
+	>=dev-lang/R-2.11.1
+	>=dev-libs/boost-1.63:=
+	>=dev-libs/mathjax-2.7.4
+	sys-apps/util-linux
+	>=sys-devel/clang-3.5.0:*
+	sys-libs/zlib
+	>=virtual/jre-1.8:=
+	x11-libs/pango
+	!dedicated? (
+		>=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtopengl-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)]
+		>=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtsql-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtsvg-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtwebkit-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtxml-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
+		server? ( virtual/pam )
+	)
+	dedicated? ( virtual/pam )
+	!libressl? ( dev-libs/openssl:0= )
+	libressl? ( dev-libs/libressl:0= )"
+DEPEND="${RDEPEND}
+	app-arch/unzip
+	dev-java/ant-core
+	>=virtual/jdk-1.8:=
+	virtual/pkgconfig"
+#	test? ( dev-java/junit:4 )
+
+PATCHES=(
+		"${FILESDIR}/${PN}-0.99.879-prefs.patch"
+		"${FILESDIR}/${PN}-1.0.44-paths.patch"
+		"${FILESDIR}/${PN}-1.1.357-clang-pandoc.patch"
+		"${FILESDIR}/${PN}-0.98.490-linker_flags.patch"
+		"${FILESDIR}/${PN}-0.99.473-qtsingleapplication.patch"
+		"${FILESDIR}/${PN}-1.0.44-systemd.patch"
+		"${FILESDIR}/${PN}-1.1.453-boost-1.67.0.patch"
+		"${FILESDIR}/${PN}-1.1.453-core.patch"
+		"${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p1.patch"
+		"${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p2.patch"
+		"${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p3.patch"
+		"${FILESDIR}/${PN}-1.1.463-fix-ptr-int-compare.patch"
+		"${FILESDIR}/${PN}-1.1.463-boost-1.70.0.patch"
+)
+
+src_unpack() {
+	unpack ${P}.tar.gz gwt-${GWT_VER}.zip
+	cd "${S}" || die
+	mkdir -p src/gwt/lib/{gin,gwt} \
+		dependencies/common/dictionaries \
+		src/gwt/lib/selenium/${SELENIUM_VER} \
+		src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die
+	mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die
+	unzip -qd src/gwt/lib/gin/${GIN_VER} \
+		"${DISTDIR}"/gin-${GIN_VER}.zip || die
+	unzip -qd dependencies/common/dictionaries \
+		"${DISTDIR}"/core-dictionaries.zip || die
+	unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \
+		"${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die
+	cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \
+		src/gwt/lib/selenium/${SELENIUM_VER}/ || die
+	cp "${DISTDIR}"/chromedriver-linux \
+		src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die
+	cd dependencies/common || die
+	unpack packrat-${PACKRAT_VER}.tar.gz
+	unpack rmarkdown-${RMARKDOWN_VER}.tar.gz
+	unpack shinyapps-${SHINYAPPS_VER}.tar.gz
+	unpack rsconnect_${RSCONNECT_VER}.tar.gz
+	cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \
+		. || die
+	cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \
+		. || die
+	cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \
+		. || die
+	cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \
+		. || die
+}
+
+src_prepare() {
+	cmake-utils_src_prepare
+	java-pkg-2_src_prepare
+	egit_clean
+
+	# Enable CMake to install our .service file for systemd usage
+	mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die
+	cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die
+
+	# Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
+	# this sed hack for now. ~RMH
+	sed -i \
+		-e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
+		src/cpp/server/ServerOptions.cpp \
+		src/cpp/session/SessionOptions.cpp || die
+
+	# use mathjax from system
+	ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die
+
+	# make sure icons and mime stuff are with prefix
+	sed -i \
+		-e "s:/usr:${EPREFIX}/usr:g" \
+		CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
+
+	# On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
+	sed -e "s@/etc/rstudio/rserver.conf@${EROOT}etc/conf.d/rstudio-server.conf@" \
+		-i src/cpp/server/ServerOptions.cpp \
+		|| die
+
+	# Set the rsession.conf file location for Gentoo prefix
+	sed -e "s@/etc/rstudio/rsession.conf@${EROOT}etc/rstudio/rsession.conf@" \
+		-i src/cpp/session/SessionOptions.cpp \
+		|| die
+
+	# dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module.
+	# It provides a library that has its version number appended to the end,
+	# which is difficult to handle in cmake, as find_library does not support
+	# searching for wildcard library names. So I find the library name from the
+	# qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt.
+	rm -rf "${S}"/src/cpp/desktop/3rdparty || die
+	local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \
+				   $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \
+					 | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \
+						   -e 's@LIBS \*= -l@@')
+	sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \
+		-i "${S}"/src/cpp/desktop/CMakeLists.txt \
+		|| die
+
+	# The git commit for tag: git rev-list -n 1 v${PV}
+	sed -e 's@git ARGS rev-parse HEAD@echo ARGS 6871a99b32add885fe6fa3d50fe15f62346142e7@'\
+		-i "${S}"/CMakeLists.txt \
+		"${S}"/CMakeGlobals.txt \
+		|| die
+}
+
+src_configure() {
+	export RSTUDIO_VERSION_MAJOR=$(ver_cut 1)
+	export RSTUDIO_VERSION_MINOR=$(ver_cut 2)
+	export RSTUDIO_VERSION_PATCH=$(ver_cut 3)
+
+	local mycmakeargs=(
+		-DDISTRO_SHARE=share/${PN}
+		-DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")"
+		-DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
+		-DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake
+		-DRSTUDIO_VERIFY_R_VERSION=FALSE
+		)
+
+	cmake-utils_src_configure
+}
+
+src_compile() {
+	# Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny
+	# P: /root/.oracle_jre_usage.
+	export ANT_OPTS="-Duser.home=${T}"
+	cmake-utils_src_compile
+}
+
+src_install() {
+	export ANT_OPTS="-Duser.home=${T}"
+	cmake-utils_src_install
+	pax-mark m "${ED}/usr/bin/rstudio"
+	doconfd "${FILESDIR}"/rstudio-server.conf
+	dodir /etc/rstudio
+	insinto /etc/rstudio
+	doins "${FILESDIR}"/rsession.conf
+	dosym "${ROOT}etc/conf.d/rstudio-server.conf" "${ROOT}etc/rstudio/rserver.conf"
+	if use dedicated || use server; then
+		dopamd src/cpp/server/extras/pam/rstudio
+		newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
+	fi
+}
+
+pkg_preinst() {
+	use dedicated || gnome2_icon_savelist
+	java-pkg-2_pkg_preinst
+}
+
+pkg_postinst() {
+	use dedicated || { xdg_desktop_database_update
+		xdg_mimeinfo_database_update
+		gnome2_icon_cache_update ;}
+
+	if use dedicated || use server; then
+		enewgroup rstudio-server
+		enewuser rstudio-server -1 -1 -1 rstudio-server
+	fi
+}
+
+pkg_postrm() {
+	use dedicated || { xdg_desktop_database_update
+		xdg_mimeinfo_database_update
+		gnome2_icon_cache_update ;}
+}
diff --git a/sci-mathematics/rstudio/rstudio-1.1.463.ebuild b/sci-mathematics/rstudio/rstudio-1.1.463.ebuild
index 271588e60b84..5c0511bb9a52 100644
--- a/sci-mathematics/rstudio/rstudio-1.1.463.ebuild
+++ b/sci-mathematics/rstudio/rstudio-1.1.463.ebuild
@@ -101,6 +101,7 @@ PATCHES=(
 		"${FILESDIR}/${PN}-1.1.453-core.patch"
 		"${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p1.patch"
 		"${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p2.patch"
+		"${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p3.patch"
 		"${FILESDIR}/${PN}-1.1.463-fix-ptr-int-compare.patch"
 )
 
diff --git a/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild b/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
new file mode 100644
index 000000000000..4ff5da665091
--- /dev/null
+++ b/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
@@ -0,0 +1,253 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils
+
+# TODO
+# * package gin and gwt
+# * use dict from tree, linguas
+# * do src_test (use junit from tree?)
+
+# update from scripts in dependencies/common
+# egrep '(GWT_SDK_VER=|GIN_VER=|SELENIUM_VER=|CHROMEDRIVER_VER=)' dependencies/common/install-gwt
+GWT_VER=2.8.1
+GIN_VER=2.1.2
+SELENIUM_VER=2.37.0
+CHROMEDRIVER_VER=2.7
+# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc
+# It should be PANDOC_VER=2.3.1 however >=app-text/pandoc-2.3.1 is not yet in portage
+PANDOC_VER=1.19.2.1
+# ls dependencies/common/*.tar.gz
+PACKRAT_VER=0.98.1000
+RMARKDOWN_VER=0.98.1000
+SHINYAPPS_VER=0.98.1000
+RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0
+
+DESCRIPTION="IDE for the R language"
+HOMEPAGE="
+	http://www.rstudio.org
+	https://github.com/rstudio/rstudio/"
+SRC_URI="
+	https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
+	https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip
+	https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip
+	https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip
+	https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar
+	https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux
+	https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
+	https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz
+	https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz
+	https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz
+	https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz
+"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="dedicated libressl server"
+
+QT_VER=5.4
+QT_SLOT=5
+RDEPEND="
+	>=app-text/pandoc-${PANDOC_VER}
+	dev-haskell/pandoc-citeproc
+	>=dev-lang/R-2.11.1
+	>=dev-libs/boost-1.63:=
+	>=dev-libs/mathjax-2.7.4
+	sys-apps/util-linux
+	>=sys-devel/clang-3.5.0:*
+	sys-libs/zlib
+	>=virtual/jre-1.8:=
+	x11-libs/pango
+	!dedicated? (
+		>=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtopengl-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)]
+		>=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtsql-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtsvg-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtwebkit-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtxml-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
+		server? ( virtual/pam )
+	)
+	dedicated? ( virtual/pam )
+	!libressl? ( dev-libs/openssl:0= )
+	libressl? ( dev-libs/libressl:0= )"
+DEPEND="${RDEPEND}
+	app-arch/unzip
+	dev-java/ant-core
+	>=virtual/jdk-1.8:=
+	virtual/pkgconfig"
+#	test? ( dev-java/junit:4 )
+
+PATCHES=(
+		"${FILESDIR}/${PN}-1.2.1335-prefs.patch"
+		"${FILESDIR}/${PN}-1.2.1335-paths.patch"
+		"${FILESDIR}/${PN}-1.2.1335-pandoc.patch"
+		"${FILESDIR}/${PN}-1.2.1335-linker_flags.patch"
+		"${FILESDIR}/${PN}-1.2.1335-qtsingleapplication.patch"
+		"${FILESDIR}/${PN}-1.0.44-systemd.patch"
+		"${FILESDIR}/${PN}-1.2.1335-core.patch"
+		"${FILESDIR}/${PN}-1.2.1335-fix-ptr-int-compare.patch"
+		"${FILESDIR}/${PN}-1.2.1335-boost-1.70.0_p1.patch"
+		"${FILESDIR}/${PN}-1.2.1335-boost-1.70.0_p2.patch"
+)
+
+src_unpack() {
+	unpack ${P}.tar.gz gwt-${GWT_VER}.zip
+	cd "${S}" || die
+	mkdir -p src/gwt/lib/{gin,gwt} \
+		dependencies/common/dictionaries \
+		src/gwt/lib/selenium/${SELENIUM_VER} \
+		src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die
+	mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die
+	unzip -qd src/gwt/lib/gin/${GIN_VER} \
+		"${DISTDIR}"/gin-${GIN_VER}.zip || die
+	unzip -qd dependencies/common/dictionaries \
+		"${DISTDIR}"/core-dictionaries.zip || die
+	unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \
+		"${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die
+	cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \
+		src/gwt/lib/selenium/${SELENIUM_VER}/ || die
+	cp "${DISTDIR}"/chromedriver-linux \
+		src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die
+	cd dependencies/common || die
+	unpack packrat-${PACKRAT_VER}.tar.gz
+	unpack rmarkdown-${RMARKDOWN_VER}.tar.gz
+	unpack shinyapps-${SHINYAPPS_VER}.tar.gz
+	unpack rsconnect_${RSCONNECT_VER}.tar.gz
+	cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \
+		. || die
+	cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \
+		. || die
+	cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \
+		. || die
+	cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \
+		. || die
+}
+
+src_prepare() {
+	cmake-utils_src_prepare
+	java-pkg-2_src_prepare
+	egit_clean
+
+	# Enable CMake to install our .service file for systemd usage
+	mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die
+	cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die
+
+	# Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
+	# this sed hack for now. ~RMH
+	sed -i \
+		-e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
+		src/cpp/server/ServerOptions.cpp \
+		src/cpp/session/SessionOptions.cpp || die
+
+	# use mathjax from system
+	ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die
+
+	# make sure icons and mime stuff are with prefix
+	sed -i \
+		-e "s:/usr:${EPREFIX}/usr:g" \
+		CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
+
+	# On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
+	sed -e "s@/etc/rstudio/rserver.conf@${EROOT}etc/conf.d/rstudio-server.conf@" \
+		-i src/cpp/server/ServerOptions.cpp \
+		|| die
+
+	# Set the rsession.conf file location for Gentoo prefix
+	sed -e "s@/etc/rstudio/rsession.conf@${EROOT}etc/rstudio/rsession.conf@" \
+		-i src/cpp/session/SessionOptions.cpp \
+		|| die
+
+	# dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module.
+	# It provides a library that has its version number appended to the end,
+	# which is difficult to handle in cmake, as find_library does not support
+	# searching for wildcard library names. So I find the library name from the
+	# qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt.
+	rm -rf "${S}"/src/cpp/desktop/3rdparty || die
+	local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \
+				   $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \
+					 | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \
+						   -e 's@LIBS \*= -l@@')
+	sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \
+		-i "${S}"/src/cpp/desktop/CMakeLists.txt \
+		|| die
+
+	# The git commit for tag: git rev-list -n 1 v${PV}
+	sed -e 's@git ARGS rev-parse HEAD@echo ARGS 6871a99b32add885fe6fa3d50fe15f62346142e7@'\
+		-i "${S}"/CMakeLists.txt \
+		"${S}"/CMakeGlobals.txt \
+		|| die
+}
+
+src_configure() {
+	export RSTUDIO_VERSION_MAJOR=$(ver_cut 1)
+	export RSTUDIO_VERSION_MINOR=$(ver_cut 2)
+	export RSTUDIO_VERSION_PATCH=$(ver_cut 3)
+
+	local mycmakeargs=(
+		-DDISTRO_SHARE=share/${PN}
+		-DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")"
+		-DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
+		-DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake
+		-DRSTUDIO_VERIFY_R_VERSION=FALSE
+		)
+
+	cmake-utils_src_configure
+}
+
+src_compile() {
+	# Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny
+	# P: /root/.oracle_jre_usage.
+	export ANT_OPTS="-Duser.home=${T}"
+	cmake-utils_src_compile
+}
+
+src_install() {
+	export ANT_OPTS="-Duser.home=${T}"
+	cmake-utils_src_install
+	pax-mark m "${ED}/usr/bin/rstudio"
+	doconfd "${FILESDIR}"/rstudio-server.conf
+	dodir /etc/rstudio
+	insinto /etc/rstudio
+	doins "${FILESDIR}"/rsession.conf
+	dosym "${ROOT}etc/conf.d/rstudio-server.conf" "${ROOT}etc/rstudio/rserver.conf"
+	if use dedicated || use server; then
+		dopamd src/cpp/server/extras/pam/rstudio
+		newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
+	fi
+}
+
+pkg_preinst() {
+	use dedicated || gnome2_icon_savelist
+	java-pkg-2_pkg_preinst
+}
+
+pkg_postinst() {
+	use dedicated || { xdg_desktop_database_update
+		xdg_mimeinfo_database_update
+		gnome2_icon_cache_update ;}
+
+	if use dedicated || use server; then
+		enewgroup rstudio-server
+		enewuser rstudio-server -1 -1 -1 rstudio-server
+	fi
+}
+
+pkg_postrm() {
+	use dedicated || { xdg_desktop_database_update
+		xdg_mimeinfo_database_update
+		gnome2_icon_cache_update ;}
+}
author	Mark Wright <gienah@gentoo.org>	2019-08-22 00:03:46 +1000
committer	Mark Wright <gienah@gentoo.org>	2019-08-22 00:03:46 +1000
commit	cdda9adf72b626d020a063419c1f376755d1b456 (patch)
tree	4ca0ef5398e5d5e8c68d4424da0e399980d17528 /sci-mathematics
parent	net-im/telegram-desktop-bin: drop old (diff)
download	gentoo-cdda9adf72b626d020a063419c1f376755d1b456.tar.gz gentoo-cdda9adf72b626d020a063419c1f376755d1b456.tar.bz2 gentoo-cdda9adf72b626d020a063419c1f376755d1b456.zip