| Commit message (Collapse) | Author | Age | Files | Lines | |
|---|---|---|---|---|---|
| * | sci-biology/bowtie: version bump |   David Seifert | 2016-06-04 | 2 | -1/+1 |
| | | | | | Package-Manager: portage-2.3.0_rc1 | ||||
| * | sci-biology/foldingathome: use #!/sbin/openrc-run instead of #!/sbin/runscript |   Austin English | 2016-05-18 | 1 | -1/+1 |
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| * | sci-biology/abyss: add missing dev-libs/boost dependency |   Sergei Trofimovich | 2016-05-15 | 1 | -0/+1 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/vienna-rna: Fix QA MissingSlotDep | David Seifert | 2016-05-15 | 1 | -2/+2 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/vienna-rna: Fix QA MissingSlotDep | David Seifert | 2016-05-15 | 1 | -2/+2 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/mrbayes: Fix QA MissingSlotDep | David Seifert | 2016-05-15 | 1 | -2/+2 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/bwa: Version bump | David Seifert | 2016-05-08 | 3 | -0/+66 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/allpathslg: replace isnan macro with proper std::isnan function | David Seifert | 2016-05-05 | 1 | -1/+21 |
| | | | | | | | Gentoo-Bug: 580086 Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/bioperl: Fix dependency on dev-perl/YAML |   Kent Fredric | 2016-04-29 | 1 | -1/+1 |
| | | | | | | Package-Manager: portage-2.2.28 RepoMan-Options: --include-arches="alpha amd64 amd64-fbsd arm arm64 hppa ia64 m68k mips nios2 ppc ppc64 riscv s390 sh sparc sparc-fbsd x86 x86-fbsd" | ||||
| * | sci-biology/emboss: Clean up of files dir |   Justin Lecher | 2016-04-26 | 8 | -838/+7 |
| | | | | | | | | | | Move to readme.gentoo-r1.eclass Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=579728 Package-Manager: portage-2.2.28 Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | sci-biology/hmmer: cheamup of 2.3.2 version |   Ian Stakenvicius | 2016-04-19 | 3 | -68/+15 |
| | | | | | | | | | | * Bumped EAPI * Merged KEYWORDS between 2.3.2-r1 and 2.3.2-r2 * dropped IUSE="pvm" as package was dropped 5 years ago * fixed metadata.xml to match Package-Manager: portage-2.2.26 | ||||
| * | sci-biology/bioperl: Fix dependency on dev-perl/Set-Scalar | Kent Fredric | 2016-04-15 | 2 | -4/+4 |
| | | | | | | Package-Manager: portage-2.2.28 RepoMan-Options: --include-arches="amd64 amd64-fbsd arm arm64 mips nios2 ppc ppc64 riscv s390 sh sparc-fbsd" | ||||
| * | sci-biology/goby: Clean up old. |   Patrice Clement | 2016-04-15 | 2 | -114/+0 |
| | | | | | Package-Manager: portage-2.2.26 | ||||
| * | sci-biology/goby: Bump fastutil dependency SLOT to 0. | Patrice Clement | 2016-04-15 | 2 | -0/+114 |
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| * | sci-biology/bowtie: Version bump to 2.2.8 | David Seifert | 2016-04-10 | 2 | -0/+62 |
| | | | | | | | * EAPI=6 Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Remove lua dep, fix perl shebangs | David Seifert | 2016-04-10 | 1 | -3/+14 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/pysam: Remove old | David Seifert | 2016-04-10 | 2 | -26/+0 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/pysam: Version bump, add py3 support | David Seifert | 2016-04-10 | 3 | -0/+87 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Remove lua dep, fix perl shebangs | David Seifert | 2016-04-09 | 1 | -1/+11 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/seqan: Remove old and broken ebuilds | David Seifert | 2016-04-09 | 5 | -178/+0 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/tophat: Remove old and broken | David Seifert | 2016-04-09 | 10 | -526/+0 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/tophat: Version bump, use samtools:0.1-legacy | David Seifert | 2016-04-09 | 3 | -0/+184 |
| | | | | | | | | | | Gentoo-Bug: 545154, 546816, 566494, 572054 * EAPI=6 * Unbundle samtools and SeqAn * Fix broken shebangs in python scripts Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/bowtie: unbundle SeqAn, import Debian patches | David Seifert | 2016-04-09 | 8 | -0/+700 |
| | | | | | | | * EAPI=6 Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/seqan: SLOT 1.4 and 2.1, allow for parallel installation | David Seifert | 2016-04-09 | 5 | -0/+186 |
| | | | | | | | | Gentoo-Bug: 566502 * EAPI=6 Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/readseq: Remove dead package, see bug #550148 |   James Le Cuirot | 2016-04-03 | 5 | -108/+0 |
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| * | sci-biology/abyss: Remove old | David Seifert | 2016-04-03 | 4 | -120/+0 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/abyss: Latest ebuild from science-overlay | David Seifert | 2016-04-03 | 2 | -0/+94 |
| | | | | | | | * EAPI=6 Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/cufflinks: Remove old | David Seifert | 2016-04-03 | 8 | -1527/+0 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/cufflinks: Depend only on sci-biology/samtools:0.1-legacy | David Seifert | 2016-04-03 | 2 | -0/+83 |
| | | | | | | | | | | | Gentoo-Bug: 535716 * EAPI=6 * Updated boost in tree has fixed serialization for boost::shared_ptr * Build system is now orthogonal to sci-biology/samtools:0 and does not block updating to latest samtools Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/rebase: amd64/ppc/x86 stable, (ALLARCHES policy) wrt bug #578804 |   Agostino Sarubbo | 2016-04-02 | 1 | -1/+1 |
| | | | | | | Package-Manager: portage-2.2.26 Signed-off-by: Agostino Sarubbo <ago@gentoo.org> | ||||
| * | sci-biology/rebase: Version Bump | Justin Lecher | 2016-04-02 | 2 | -0/+47 |
| | | | | | | Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | sci-biology/samtools: version bump to 1.3, to match htslib | David Seifert | 2016-03-28 | 4 | -0/+998 |
| | | | | | | | | | * EAPI=6 * Added modern AX_WITH_CURSES that works with pkg-config * Fixed incorrect symlinks for libbam.so Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Move to SLOT="0.1-legacy" for future legacy versions | David Seifert | 2016-03-28 | 2 | -11/+11 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Add elog message discouraging direct use | David Seifert | 2016-03-28 | 1 | -0/+6 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Version bump to 0.1.20 | David Seifert | 2016-03-28 | 3 | -0/+271 |
| | | | | | | | | | | * EAPI=6 * samtools will be slotted with SLOT="legacy", in order to be able to install applications that rely on the old monolithic library. Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Trim DESCRIPTION | David Seifert | 2016-03-28 | 1 | -3/+3 |
| | | | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Trim DESCRIPTION | David Seifert | 2016-03-28 | 1 | -3/+3 |
| | | | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Trim DESCRIPTION | David Seifert | 2016-03-28 | 1 | -3/+3 |
| | | | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Trim DESCRIPTION | David Seifert | 2016-03-28 | 1 | -3/+3 |
| | | | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Trim DESCRIPTION | David Seifert | 2016-03-28 | 1 | -3/+3 |
| | | | | | | | * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/samtools: Trim DESCRIPTION | David Seifert | 2016-03-28 | 1 | -2/+2 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/biopython: Add python3_5 support | David Seifert | 2016-03-27 | 1 | -2/+2 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/bioruby: Remove ruby19 |   Manuel Rüger | 2016-03-20 | 2 | -4/+4 |
| | | | | | Package-Manager: portage-2.2.28 | ||||
| * | sci-biology/seaview: ppc stable wrt bug #575914 | Agostino Sarubbo | 2016-03-16 | 1 | -1/+1 |
| | | | | | | | Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> | ||||
| * | sci-biology/primer3: ppc stable wrt bug #575016 | Agostino Sarubbo | 2016-03-16 | 1 | -1/+1 |
| | | | | | | | Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> | ||||
| * | sci-biology/seaview: x86 stable wrt bug #575914 | Agostino Sarubbo | 2016-03-15 | 1 | -1/+1 |
| | | | | | | | Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> | ||||
| * | sci-biology/primer3: x86 stable wrt bug #575016 | Agostino Sarubbo | 2016-03-15 | 1 | -1/+1 |
| | | | | | | | Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> | ||||
| * | sci-biology/phrap: Fix dependency on dev-perl/Tk | Kent Fredric | 2016-03-15 | 1 | -2/+2 |
| | | | | | Package-Manager: portage-2.2.27 | ||||
| * | sci-biology/biojava: Remove outdated unmaintained package | James Le Cuirot | 2016-03-06 | 4 | -160/+0 |
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| * | sci-biology/mauvealigner: Remove outdated unmaintained package | James Le Cuirot | 2016-03-06 | 2 | -43/+0 |
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