blob: 7c5e1267e4e9911cc75f3455b8882585492f1da7 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
|
--- a/src/paths/long/VariantCallTools.cc
+++ b/src/paths/long/VariantCallTools.cc
@@ -1870,8 +1870,8 @@
bool i_is_indel = (change[i].first.size() != change[i].second.size());
if (i_is_indel) inserted_base += change[i].second.size()-1;
size_t j = i + 1;
- while (j < edits.size() && abs(edits[j].second - edits[j-1].second
- - change[j-1].first.size()) < MinClumpSep) {
+ while (j < edits.size() && std::abs(edits[j].second - edits[j-1].second
+ - static_cast<int>(change[j-1].first.size())) < MinClumpSep) {
nmatch += edits[j].second - edits[j-1].second - change[j-1].first.size();
bool j_is_indel = (change[j].first.size() != change[j].second.size());
if (j_is_indel)
|
GitWeb
