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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
BIOPERL_RELEASE=1.6.9
DIST_NAME=BioPerl-DB
DIST_AUTHOR=CJFIELDS
DIST_VERSION=1.006900
inherit perl-module
DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema"
HOMEPAGE="http://www.bioperl.org/"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="test"
DIST_TEST="do" # Parallelism probably bad
RDEPEND="
>=sci-biology/bioperl-${PV}
dev-perl/DBD-mysql
dev-perl/DBI
sci-biology/biosql"
DEPEND="${RDEPEND}
dev-perl/Module-Build
test? (
dev-perl/Data-Stag
dev-perl/Sub-Uplevel
dev-perl/Test-Warn
dev-perl/Test-Exception
virtual/perl-Test-Simple
)
"
src_prepare() {
if use test; then
eapply "${FILESDIR}/${PN}-1.6.9-db.patch"
einfo "Using the following configuration details for test database:"
einfo " GENTOO_DB_TEST_HOST : ${GENTOO_DB_TEST_HOST:=localhost}"
einfo " GENTOO_DB_TEST_USER : ${GENTOO_DB_TEST_USER:=portage}"
einfo " GENTOO_DB_TEST_PORT : ${GENTOO_DB_TEST_PORT:=3306}"
einfo " GENTOO_DB_TEST_PASSWOWRD: ${GENTOO_DB_TEST_PASSWORD:=sekrit}"
einfo " GENTOO_DB_TEST_DATABASE : ${GENTOO_DB_TEST_DB:=biosql_test}"
einfo "Please ensure the relevant mysql database is configured and/or tweak"
einfo "environment variables to suit"
export GENTOO_DB_TEST_HOST GENTOO_DB_TEST_USER GENTOO_DB_TEST_PORT GENTOO_DB_TEST_PASSWORD GENTOO_DB_TEST_DB
fi
perl-module_src_prepare
}
src_install() {
mydoc="AUTHORS BUGS FAQ"
perl-module_src_install
}
src_test() {
einfo "Removing bundled test libraries t/lib"
rm -r "${S}/t/lib" || die "Cannot remove t/lib"
perl-module_src_test
}
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