sci-biology/eugene/eugene-4.1d-r1.ebuild


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# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit autotools

DESCRIPTION="Prokaryotic and Eukaryotic gene predictor"
HOMEPAGE="http://eugene.toulouse.inra.fr/"
SRC_URI="https://mulcyber.toulouse.inra.fr/frs/download.php/1359/${P}.tar.gz"

LICENSE="Artistic"
SLOT="0"
KEYWORDS="amd64 x86"
RESTRICT="test"

DEPEND="
	media-libs/gd[png]
	media-libs/libpng:="
RDEPEND="${DEPEND}"

PATCHES=(
	# https://mulcyber.toulouse.inra.fr/tracker/index.php?func=detail&aid=1170
	"${FILESDIR}"/${PN}-3.6-overflow.patch
	"${FILESDIR}"/${PN}-3.6-plugins.patch
	"${FILESDIR}"/${PN}-4.1-format-security.patch
	"${FILESDIR}"/${PN}-4.1d-fix-c++14.patch
	"${FILESDIR}"/${PN}-4.1d-Wformat.patch
	"${FILESDIR}"/${PN}-4.1d-portable-getopt.patch
	"${FILESDIR}"/${PN}-4.1d-clang16.patch
)

src_prepare() {
	default
	sed \
		-e '/SUBDIRS/ s/doc//' \
		-e '/INSTALL.*doc/ s/\(.*\)//' \
		-i Makefile.am || die
	rm src/getopt.h || die
	eautoreconf
}