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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit flag-o-matic toolchain-funcs
DESCRIPTION="A rapid whole genome aligner"
HOMEPAGE="http://mummer.sourceforge.net/"
SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="doc"
DEPEND=""
RDEPEND="
app-shells/tcsh
dev-lang/perl"
S=${WORKDIR}/MUMmer${PV}
PATCHES=(
"${FILESDIR}"/${PN}-3.23-fix-build-system.patch
"${FILESDIR}"/${PN}-3.23-fix-c++-qa.patch
"${FILESDIR}"/${PN}-3.23-fix-shebangs.patch
)
src_configure() {
use amd64 && append-cppflags -DSIXTYFOURBITS
tc-export AR CC CXX
}
src_install() {
dobin src/kurtz/mm3src/mummer
dobin src/tigr/{combineMUMs,delta-filter,gaps,mgaps,postnuc,postpro,prenuc,prepro,repeat-match,show-aligns,show-coords,show-tiling,show-snps,show-diff}
dobin scripts/{exact-tandems,mapview,mummerplot,dnadiff,nucmer,promer,run-mummer1,run-mummer3,nucmer2xfig}
newbin src/tigr/annotate mummer-annotate
insinto /usr/share/${PN}/lib
doins scripts/Foundation.pm
einstalldocs
use doc && dodoc -r docs/.
}
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