blob: c2bc7ce89cf60d3211bdd82b1d6b5011e8e15561 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
|
# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python2_7 )
inherit autotools python-r1 toolchain-funcs
DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
HOMEPAGE="http://www.htslib.org/"
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="examples"
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
RDEPEND="
dev-lang/perl
=sci-libs/htslib-${PV}*
sys-libs/ncurses:0=
sys-libs/zlib
${PYTHON_DEPS}"
DEPEND="${RDEPEND}
virtual/pkgconfig"
PATCHES=( "${FILESDIR}/${PN}-1.5-buildsystem.patch" )
src_prepare() {
default
python_setup
python_fix_shebang misc/varfilter.py
# remove bundled htslib
rm -r htslib-* || die
eautoreconf
}
src_test() {
local -x LD_LIBRARY_PATH="${S}"
default
}
src_install() {
default
# install libbam and headers
dolib.so libbam.so*
insinto /usr/include/bam
doins *.h
if use examples; then
dodoc -r examples
docompress -x /usr/share/doc/${PF}/examples
fi
}
|
GitWeb
