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# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python2_7 )
inherit cmake-utils python-any-r1 versionator
DESCRIPTION="C++ Sequence Analysis Library"
HOMEPAGE="http://www.seqan.de/"
SRC_URI="http://packages.${PN}.de/${PN}-src/${PN}-src-${PV}.tar.gz"
SLOT="0"
LICENSE="BSD GPL-3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="cpu_flags_x86_sse4_1 doc test"
REQUIRED_USE="cpu_flags_x86_sse4_1"
RDEPEND="
app-arch/bzip2
sys-libs/zlib
!!sci-biology/seqan:2.0
!!sci-biology/seqan:2.1
!!sci-biology/seqan:2.2"
DEPEND="
${RDEPEND}
doc? (
$(python_gen_any_dep 'dev-python/sphinx[${PYTHON_USEDEP}]')
${PYTHON_DEPS}
)
test? (
$(python_gen_any_dep 'dev-python/nose[${PYTHON_USEDEP}]')
${PYTHON_DEPS}
)"
S="${WORKDIR}"/${PN}-${PN}-v${PV}
pkg_setup() {
if use test || use doc; then
python-any-r1_pkg_setup
fi
}
src_prepare() {
seqan_major_ver=$(get_version_component_range 1)
seqan_majorminor_ver=$(get_version_component_range 1-2)
# install docs in proper Gentoo structure
sed -e "s#share/doc/seqan#share/doc/${PF}#" \
-e "s#\"share/doc/\${APP_NAME}\"#\"share/doc/${PF}/\${APP_NAME}\"#" \
-i util/cmake/SeqAnBuildSystem.cmake dox/CMakeLists.txt || die
# cmake module
sed -e "s#find_path(_SEQAN_BASEDIR \"seqan\"#find_path(_SEQAN_BASEDIR \"seqan-${seqan_majorminor_ver}\"#" \
-e 's#NO_DEFAULT_PATH)#PATHS /usr)#' \
-e "s#set(SEQAN_INCLUDE_DIRS_MAIN \${SEQAN_INCLUDE_DIRS_MAIN} \${_SEQAN_BASEDIR})#set(SEQAN_INCLUDE_DIRS_MAIN \${SEQAN_INCLUDE_DIRS_MAIN} \${_SEQAN_BASEDIR}/seqan-${seqan_majorminor_ver})#" \
-i util/cmake/FindSeqAn.cmake || die
# pkg-config file
sed -e "s#includedir=\${prefix}/include#includedir=\${prefix}/include/${PN}-${seqan_majorminor_ver}#" \
-i util/pkgconfig/${PN}.pc.in || die
rm -f util/cmake/FindZLIB.cmake || die
cmake-utils_src_prepare
}
src_configure() {
local mycmakeargs=(
-DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY
-DSEQAN_NO_DOX=$(usex !doc)
)
cmake-utils_src_configure
}
src_compile() {
cmake-utils_src_compile
use doc && cmake-utils_src_compile -C "${BUILD_DIR}" dox
}
src_install() {
cmake-utils_src_install
# multi-version header such that different seqan versions can be installed in parallel
mkdir "${ED%/}"/usr/include/${PN}-${seqan_majorminor_ver} || die
mv "${ED%/}"/usr/include/${PN}{,-${seqan_majorminor_ver}/} || die
# pkg-config file
mv "${ED%/}"/usr/share/pkgconfig/${PN}-{${seqan_major_ver},${seqan_majorminor_ver}}.pc || die
# create pkg-config symlink to restore default behaviour
dosym ${PN}-${seqan_majorminor_ver}.pc /usr/share/pkgconfig/${PN}-${seqan_major_ver}.pc
}
|
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