sci-biology/vaal/vaal-46233.ebuild


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42

# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$

EAPI=5

AUTOTOOLS_AUTORECONF=yes

inherit autotools-utils

DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms"
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/"
SRC_URI="
	ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz
	ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc"

LICENSE="Whitehead-MIT"
SLOT="0"
KEYWORDS="amd64"
IUSE="openmp"

DEPEND=">=dev-libs/boost-1.41.0-r3"
RDEPEND="${DEPEND}"

DOCS=( "${DISTDIR}/VAAL_manual.doc" )

src_prepare() {
	sed \
		-e '/COPYING/d' \
		-i src/Makefile.am || die

	sed \
		-e 's:-ggdb::g' \
		-e '/AC_OPENMP_CEHCK/d' \
		-i configure.ac || die
	autotools-utils_src_prepare
}

src_configure(){
	local myeconfargs=( $(use_enable openmp) )
	autotools-utils_src_configure
}