blob: f2af6fcda84ab562e2dbc9fcf93a78679f3ea951 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=3
inherit eutils toolchain-funcs
MY_P="${PN}.${PV}.src"
DESCRIPTION="Adds hydrogens to a Protein Data Bank (PDB) molecule structure file"
HOMEPAGE="http://kinemage.biochem.duke.edu/software/reduce.php"
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/reduce31/${MY_P}.tgz"
LICENSE="richardson"
SLOT="0"
KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
IUSE=""
RDEPEND=""
DEPEND="${RDEPEND}
app-arch/unzip"
S="${WORKDIR}/${MY_P}"
src_prepare() {
epatch \
"${FILESDIR}"/${PV}-LDFLAGS.patch \
"${FILESDIR}"/${PV}-CFLAGS.patch
}
src_compile() {
DICT_DIR="/usr/share/reduce"
DICT_FILE="reduce_het_dict.txt"
emake \
CC="$(tc-getCC)" \
CXX="$(tc-getCXX)" \
OPT="${CXXFLAGS}" \
DICT_HOME="${EPREFIX}/${DICT_DIR}/${DICT_FILE}" \
|| die "make failed"
}
src_install() {
dobin "${S}"/reduce_src/reduce || die
insinto ${DICT_DIR}
doins "${S}"/${DICT_FILE} "${S}"/reduce_wwPDB_het_dict.txt || die
dodoc README.usingReduce.txt || die
}
pkg_postinst() {
elog "To use the PDBv3 dictionary instead of PDBv2, set the environment"
elog "variable REDUCE_HET_DICT to ${EPREFIX}/usr/share/reduce/reduce_wwPDB_het_dict.txt"
}
|
GitWeb
