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72 files changed, 4002 insertions, 0 deletions
diff --git a/app-misc/fslint/Manifest b/app-misc/fslint/Manifest new file mode 100644 index 0000000..cfe430d --- /dev/null +++ b/app-misc/fslint/Manifest @@ -0,0 +1,2 @@ +DIST fslint-2.42.tar.gz 111520 RMD160 23e825cd7d798b750c4fe435b731c6e77f15badb SHA1 607a1a8cc391537151660e1129a4c95908509b80 SHA256 babbef4a34f42ab1d396152fd79b4353adc114b2e8d68b838e20a8067c5a3273 +EBUILD fslint-2.42.ebuild 2702 RMD160 ae28a3051d0374d9764dac374fd8ff1d5fa173ce SHA1 f8d3e2bd40ef7b5d0f0bde07789212bf0d56bd28 SHA256 4dc58d6ef5c8586332c81b3abc8f119d82ae7a460cee4f72478a2a39f51a9907 diff --git a/app-misc/fslint/fslint-2.42.ebuild b/app-misc/fslint/fslint-2.42.ebuild new file mode 100644 index 0000000..079f1dc --- /dev/null +++ b/app-misc/fslint/fslint-2.42.ebuild @@ -0,0 +1,109 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ +# original ebuild by bearingspacer@free.fr +# updated ebuild by mobidyc@msn.com +# updated ebuild by davide.bettio@kdemail.net + +DESCRIPTION="A utility to find and clean various forms of lint on a filesystem." +HOMEPAGE="http://www.pixelbeat.org/fslint/" +SRC_URI="http://www.pixelbeat.org/fslint/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="-* x86 amd64" +IUSE="" + +DEPEND=">=x11-libs/gtk+-2.4 + >=dev-lang/python-2.3 + gnome-base/libglade + >=dev-python/pygtk-2.4" + +RDEPEND="${DEPEND}" + +src_unpack() { + if [ "${A}" != "" ]; then + unpack ${A} + fi +} + +src_install() { + echo ${S} + pwd + +# GUI executable + dodir /usr/bin + exeinto /usr/bin + doexe fslint-gui + +# GUI file + dodir /usr/share/fslint + insinto /usr/share/fslint + doins fslint.glade + +# other executables + dodir /usr/share/fslint/fslint + exeinto /usr/share/fslint/fslint + doexe fslint/find* fslint/zipdir fslint/fslint + + dodir /usr/share/fslint/fslint/fstool + exeinto /usr/share/fslint/fslint/fstool + doexe fslint/fstool/* + + dodir /usr/share/fslint/fslint/supprt + exeinto /usr/share/fslint/fslint/supprt + doexe fslint/supprt/get* fslint/supprt/fslver fslint/supprt/md5sum_approx + + dodir /usr/share/fslint/fslint/supprt/rmlint + exeinto /usr/share/fslint/fslint/supprt/rmlint + doexe fslint/supprt/rmlint/* + +# icon + dodir /usr/share/pixmaps + insinto /usr/share/pixmaps + doins fslint_icon.png + +# shortcut + dodir /etc/X11/applnk/System + insinto /etc/X11/applnk/System + doins fslint.desktop + +# locales + cd po + emake DESTDIR=${D}/usr DATADIR=share install + cd .. + +# docs + cd doc + dodoc FAQ NEWS README TODO + cd .. + + cd man + doman fslint-gui.1 fslint.1 + cd .. + +# create python init file +# Other option here is to instead edit fslint-gui itself so that: +# ^liblocation = '/usr/share/fslint/' +# ^locale_base = None + python_site=`python -c "import sys ; \ + print '%s/lib/python%s/site-packages' % (sys.exec_prefix,sys.version[:3])"` + dodir $python_site/fslint + echo "liblocation = '/usr/share/fslint/'" > ${D}/$python_site/fslint/__init__.py + +# link to icon in main fslint dir + dosym /usr/share/pixmaps/fslint_icon.png /usr/share/fslint/fslint_icon.png +} + +pkg_postinst() { + einfo "Note the fslint tools do a lot of inode access and to speed them" + einfo "up you can use the following method to not update access times" + einfo "on disk while gathering inode information:" + einfo "mount -o remount,noatime mountpoint" + einfo "fslint or fslint-gui" + einfo "mount -o remount,atime mountpoint" + einfo "" + einfo "Command Line Executables are installed in:" + einfo "/usr/share/fslint/fslint" + einfo "you may want to add them in your PATH." +} diff --git a/app-misc/mendeleydesktop/Manifest b/app-misc/mendeleydesktop/Manifest new file mode 100644 index 0000000..b386805 --- /dev/null +++ b/app-misc/mendeleydesktop/Manifest @@ -0,0 +1,18 @@ +DIST mendeleydesktop-0.9.6.3-linux-x86_64.tar.bz2 23168726 RMD160 ef52fa071285072930a933ca48798c1db2df89f9 SHA1 90b730e72176402fe2e2dae32ee8f87d896c8a1a SHA256 c6a89e11dbd5348b96fa9eac4dd4276388326c7160e9959dd2b19d9128a56018 +DIST mendeleydesktop-0.9.7.1-linux-x86_64.tar.bz2 31653285 RMD160 57aedc7490b9024b5f6897d70c413303426da13c SHA1 e8f8781a58d47baf3464e0278aef57b0c73e5b83 SHA256 5b6935a34225bac6c92ebc1535106934f41d2c4112c0669b68cf3d0d2bbc209d +DIST mendeleydesktop-0.9.8.1-linux-x86_64.tar.bz2 32615789 RMD160 ec255ca75326aa5b168228a6c443cb51bcefe8ae SHA1 947b517be6560560e8a71677a8602e0a8e102e8d SHA256 2ef4cb5f6d8b2c63955ad480d6b85aa451faa1fdd4f5042b30fa5695fab6ef13 +DIST mendeleydesktop-0.9.8.2-linux-x86_64.tar.bz2 32862729 RMD160 78f69187a0f86215b4e2a34472341e1bffcf7a44 SHA1 7e599321609aa5276e969caf4b6648d7c7f4b0a2 SHA256 d6672eb4fe339b52a939afa7dea451a61300109b028d37d4b1109ac0a50703e2 +DIST mendeleydesktop-0.9.9-linux-x86_64.tar.bz2 33319773 RMD160 5f612ec0227c9364a8c8f38d94ab36c49cc502b1 SHA1 2fe90c714137d93c78eb59ee8ed12e38d8a541a7 SHA256 f50edef24d595b318fc4681c27d6672881a2720c5dc5ef8ef379f0af2a3d8d27 +DIST mendeleydesktop-0.9.9.2-linux-x86_64.tar.bz2 33345234 RMD160 426c42bdefee97b047aa7e6390019e54386e0606 SHA1 3a4717616841b9395531e789d4d7891866f6fe68 SHA256 77c2c7b851f0c99816555c86d7b94072ab049903e147fb0c0f5bbec9129df697 +DIST mendeleydesktop-1.0-linux-x86_64.tar.bz2 33484854 RMD160 fd812e5b980d826f460fdbf0dc3d66aab42d295f SHA1 b45209d92f3dde6b8342b807b0552653170e2b32 SHA256 04bbacffeabf5341c669a0eb1c25e0d634019738f63cbe94179ed6ed8768db6c +DIST mendeleydesktop-1.0.1-linux-x86_64.tar.bz2 33484854 RMD160 fd812e5b980d826f460fdbf0dc3d66aab42d295f SHA1 b45209d92f3dde6b8342b807b0552653170e2b32 SHA256 04bbacffeabf5341c669a0eb1c25e0d634019738f63cbe94179ed6ed8768db6c +EBUILD mendeleydesktop-0.9.6.3.ebuild 2223 RMD160 d1bb1345166209f969c1351ac30907e6abfc38e5 SHA1 6b0392d50bfea8bc0bdfcb76d9dea9cb6340b749 SHA256 b0724e502527fdb5ac8ad777c6f219e2008ea8158349eda37e7bc0eed2d9237c +EBUILD mendeleydesktop-0.9.7.1.ebuild 1593 RMD160 02458506d5cd5947f43654eb6be23e84c91c21f7 SHA1 975b5f90197c5680c949a7299a6a2f25b2321a47 SHA256 13d7d7d150c5ea615afb55ac68c4a65ded97d1a6783ec16b0fb234ab6045e6e5 +EBUILD mendeleydesktop-0.9.8.1.ebuild 1593 RMD160 02458506d5cd5947f43654eb6be23e84c91c21f7 SHA1 975b5f90197c5680c949a7299a6a2f25b2321a47 SHA256 13d7d7d150c5ea615afb55ac68c4a65ded97d1a6783ec16b0fb234ab6045e6e5 +EBUILD mendeleydesktop-0.9.8.2.ebuild 1749 RMD160 6c9fd293bbd2f065d7a826bd31915642031b5b5a SHA1 c1750d601045dd847f62b9a671006ffdbe39731e SHA256 f73622d1274af2830e1dbcb599a843e060ec8676255746bf50a19763ecaae6bd +EBUILD mendeleydesktop-0.9.9.2.ebuild 1742 RMD160 4711940050a239edaca165112232813b881cae63 SHA1 342958bb5be92c8c3dd2332e55eaaa1eb74eb021 SHA256 923362184100e359418eec5a4dc5332c3061a4cfadc8ae1a78342dc40313b06c +EBUILD mendeleydesktop-0.9.9.ebuild 1742 RMD160 4711940050a239edaca165112232813b881cae63 SHA1 342958bb5be92c8c3dd2332e55eaaa1eb74eb021 SHA256 923362184100e359418eec5a4dc5332c3061a4cfadc8ae1a78342dc40313b06c +EBUILD mendeleydesktop-1.0.1.ebuild 1747 RMD160 e34c3d4109c9a247dbf39625376aecff292c6e48 SHA1 c72456d035aee08fbac5ea2f294574abd5cd5d8b SHA256 72a361a126d876162ddd497b220c5c6c0aa948be5df47753b4bce8e386eeb9b3 +EBUILD mendeleydesktop-1.0.ebuild 1742 RMD160 4711940050a239edaca165112232813b881cae63 SHA1 342958bb5be92c8c3dd2332e55eaaa1eb74eb021 SHA256 923362184100e359418eec5a4dc5332c3061a4cfadc8ae1a78342dc40313b06c +MISC mendeleydesktop-0.9.9.ebuild~ 1702 RMD160 f1bc60d1185f0007c1f433fd95732890f212d701 SHA1 1e928e2943354b8b569de23ba70a0b36a9ccb06a SHA256 31ce569213e6b3117cb59c35972a093db44a6446a152353adda466304da2d79b +MISC mendeleydesktop-1.0.1.ebuild~ 1742 RMD160 4711940050a239edaca165112232813b881cae63 SHA1 342958bb5be92c8c3dd2332e55eaaa1eb74eb021 SHA256 923362184100e359418eec5a4dc5332c3061a4cfadc8ae1a78342dc40313b06c diff --git a/app-misc/mendeleydesktop/mendeleydesktop-0.9.6.3.ebuild b/app-misc/mendeleydesktop/mendeleydesktop-0.9.6.3.ebuild new file mode 100644 index 0000000..68c4804 --- /dev/null +++ b/app-misc/mendeleydesktop/mendeleydesktop-0.9.6.3.ebuild @@ -0,0 +1,68 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit eutils + +if [ "${ARCH}" = "amd64" ] ; then + LNXARCH="linux-x86_64" +else + LNXARCH="linux-i486" +fi + +DESCRIPTION="A free research management tool for desktop & web" +HOMEPAGE="http://www.mendeley.com/" +SRC_URI="http://www.mendeley.com/downloads/linux/${P}-${LNXARCH}.tar.bz2" + +LICENSE="Mendelay-EULA" +SLOT="0" +KEYWORDS="~amd64 ~x86" +RESTRICT="mirror strip" +RDEPEND="media-libs/libpng:1.2" + +S="${WORKDIR}/${P}-${LNXARCH}" + +MENDELEY_INSTALL_DIR="/opt/${PN}" + +src_install() { + # install menu + domenu ${S}/share/applications/${PN}.desktop || die "Installing desktop files failed." + # Install commonly used icon sizes + for res in 16x16 22x22 32x32 48x48 64x64 128x128 ; do + insinto /usr/share/icons/hicolor/${res}/apps + doins share/icons/hicolor/${res}/apps/${PN}.png || die "Installing icons failed." + done + insinto /usr/share/pixmaps + doins share/icons/hicolor/48x48/apps/${PN}.png || die "Installing pixmap failed." + + + # dodoc + dodoc ${S}/share/doc/${PN}/* || die "Installing docs failed." + + dodir ${MENDELEY_INSTALL_DIR} + dodir ${MENDELEY_INSTALL_DIR}/lib + dodir ${MENDELEY_INSTALL_DIR}/share + #mv ${S}/share/icons ${D}/usr/share + mv ${S}/bin ${D}${MENDELEY_INSTALL_DIR} || die "Installing bin failed." + mv ${S}/lib ${D}${MENDELEY_INSTALL_DIR} || die "Installing libs failed." + mv ${S}/share/${PN} ${D}${MENDELEY_INSTALL_DIR}/share || die "Installing shared files failed." + + dosym /opt/${PN}/bin/${PN} /opt/bin/${PN} || die "Installing launcher symlinks failed." + +} + +pkg_postinst() { + + einfo "If you have an error message \"Cannot mix incompatible Qt libraries\"," + einfo "when you run mendeleydesktop, follow the instructions below:" + echo + einfo "- To disable the default widget style, run Mendeley with the " + einfo "'-style cleanlooks' argument (where 'cleanlooks' can also be substituted" + einfo "with 'gtk' or 'plastique' amongst others)." + echo + einfo "- To disable the 'platform integration' plugin (new feature in Qt >= 4.6)," + einfo "set the QT_PLATFORM_PLUGIN environment variable to some nonsense value " + einfo "(eg. \"ignoreme\") before running Mendeley." +} diff --git a/app-misc/mendeleydesktop/mendeleydesktop-0.9.7.1.ebuild b/app-misc/mendeleydesktop/mendeleydesktop-0.9.7.1.ebuild new file mode 100644 index 0000000..286ebb8 --- /dev/null +++ b/app-misc/mendeleydesktop/mendeleydesktop-0.9.7.1.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit eutils + +if [ "${ARCH}" = "amd64" ] ; then + LNXARCH="linux-x86_64" +else + LNXARCH="linux-i486" +fi + +DESCRIPTION="A free research management tool for desktop & web" +HOMEPAGE="http://www.mendeley.com/" +SRC_URI="http://www.mendeley.com/downloads/linux/${P}-${LNXARCH}.tar.bz2" + +LICENSE="Mendelay-EULA" +SLOT="0" +KEYWORDS="~amd64 ~x86" +RESTRICT="mirror strip" +RDEPEND="" + +S="${WORKDIR}/${P}-${LNXARCH}" + +MENDELEY_INSTALL_DIR="/opt/${PN}" + +src_install() { + # install menu + domenu ${S}/share/applications/${PN}.desktop || die "Installing desktop files failed." + # Install commonly used icon sizes + for res in 16x16 22x22 32x32 48x48 64x64 128x128 ; do + insinto /usr/share/icons/hicolor/${res}/apps + doins share/icons/hicolor/${res}/apps/${PN}.png || die "Installing icons failed." + done + insinto /usr/share/pixmaps + doins share/icons/hicolor/48x48/apps/${PN}.png || die "Installing pixmap failed." + + + # dodoc + dodoc ${S}/share/doc/${PN}/* || die "Installing docs failed." + + dodir ${MENDELEY_INSTALL_DIR} + dodir ${MENDELEY_INSTALL_DIR}/lib + dodir ${MENDELEY_INSTALL_DIR}/share + #mv ${S}/share/icons ${D}/usr/share + mv ${S}/bin ${D}${MENDELEY_INSTALL_DIR} || die "Installing bin failed." + mv ${S}/lib ${D}${MENDELEY_INSTALL_DIR} || die "Installing libs failed." + mv ${S}/share/${PN} ${D}${MENDELEY_INSTALL_DIR}/share || die "Installing shared files failed." + + dosym /opt/${PN}/bin/${PN} /opt/bin/${PN} || die "Installing launcher symlinks failed." + +} diff --git a/app-misc/mendeleydesktop/mendeleydesktop-0.9.8.1.ebuild b/app-misc/mendeleydesktop/mendeleydesktop-0.9.8.1.ebuild new file mode 100644 index 0000000..286ebb8 --- /dev/null +++ b/app-misc/mendeleydesktop/mendeleydesktop-0.9.8.1.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit eutils + +if [ "${ARCH}" = "amd64" ] ; then + LNXARCH="linux-x86_64" +else + LNXARCH="linux-i486" +fi + +DESCRIPTION="A free research management tool for desktop & web" +HOMEPAGE="http://www.mendeley.com/" +SRC_URI="http://www.mendeley.com/downloads/linux/${P}-${LNXARCH}.tar.bz2" + +LICENSE="Mendelay-EULA" +SLOT="0" +KEYWORDS="~amd64 ~x86" +RESTRICT="mirror strip" +RDEPEND="" + +S="${WORKDIR}/${P}-${LNXARCH}" + +MENDELEY_INSTALL_DIR="/opt/${PN}" + +src_install() { + # install menu + domenu ${S}/share/applications/${PN}.desktop || die "Installing desktop files failed." + # Install commonly used icon sizes + for res in 16x16 22x22 32x32 48x48 64x64 128x128 ; do + insinto /usr/share/icons/hicolor/${res}/apps + doins share/icons/hicolor/${res}/apps/${PN}.png || die "Installing icons failed." + done + insinto /usr/share/pixmaps + doins share/icons/hicolor/48x48/apps/${PN}.png || die "Installing pixmap failed." + + + # dodoc + dodoc ${S}/share/doc/${PN}/* || die "Installing docs failed." + + dodir ${MENDELEY_INSTALL_DIR} + dodir ${MENDELEY_INSTALL_DIR}/lib + dodir ${MENDELEY_INSTALL_DIR}/share + #mv ${S}/share/icons ${D}/usr/share + mv ${S}/bin ${D}${MENDELEY_INSTALL_DIR} || die "Installing bin failed." + mv ${S}/lib ${D}${MENDELEY_INSTALL_DIR} || die "Installing libs failed." + mv ${S}/share/${PN} ${D}${MENDELEY_INSTALL_DIR}/share || die "Installing shared files failed." + + dosym /opt/${PN}/bin/${PN} /opt/bin/${PN} || die "Installing launcher symlinks failed." + +} diff --git a/app-misc/mendeleydesktop/mendeleydesktop-0.9.8.2.ebuild b/app-misc/mendeleydesktop/mendeleydesktop-0.9.8.2.ebuild new file mode 100644 index 0000000..45670aa --- /dev/null +++ b/app-misc/mendeleydesktop/mendeleydesktop-0.9.8.2.ebuild @@ -0,0 +1,61 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit eutils + +if [ "${ARCH}" = "amd64" ] ; then + LNXARCH="linux-x86_64" +else + LNXARCH="linux-i486" +fi + +DESCRIPTION="A free research management tool for desktop & web" +HOMEPAGE="http://www.mendeley.com/" +SRC_URI="${HOMEPAGE}/downloads/linux/${P}-${LNXARCH}.tar.bz2" + +LICENSE="Mendelay-EULA" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +RESTRICT="mirror" +RDEPEND="dev-libs/openssl:0.9.8 + media-libs/fontconfig + media-libs/freetype + media-libs/libpng:1.2" + +S="${WORKDIR}/${P}-${LNXARCH}" + +MENDELEY_INSTALL_DIR="/opt/${PN}" + +src_install() { + # install menu + domenu "share/applications/${PN}.desktop" + # Install commonly used icon sizes + for res in 16x16 22x22 32x32 48x48 64x64 128x128 ; do + insinto "/usr/share/icons/hicolor/${res}/apps" + doins "share/icons/hicolor/${res}/apps/${PN}.png" || \ + die "Installing icons failed." + done + insinto "/usr/share/pixmaps" + doins "share/icons/hicolor/48x48/apps/${PN}.png" || \ + die "Installing pixmap failed." + + # dodoc + dodoc "share/doc/${PN}/"* || die "Installing docs failed." + + # create directories for installation + dodir ${MENDELEY_INSTALL_DIR} || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/lib" || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/share" || die "dodir failed" + + # install binaries + mv "bin" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing bin failed." + mv "lib" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing libs failed." + mv "share/${PN}" "${D}${MENDELEY_INSTALL_DIR}/share" || \ + die "Installing shared files failed." + dosym "${MENDELEY_INSTALL_DIR}/bin/${PN}" "/opt/bin/${PN}" || \ + die "Installing launcher symlinks failed." +} diff --git a/app-misc/mendeleydesktop/mendeleydesktop-0.9.9.2.ebuild b/app-misc/mendeleydesktop/mendeleydesktop-0.9.9.2.ebuild new file mode 100644 index 0000000..027add8 --- /dev/null +++ b/app-misc/mendeleydesktop/mendeleydesktop-0.9.9.2.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit eutils + +if [ "${ARCH}" = "amd64" ] ; then + LNXARCH="linux-x86_64" +else + LNXARCH="linux-i486" +fi + +DESCRIPTION="A free research management tool for desktop & web" +HOMEPAGE="http://www.mendeley.com/" +SRC_URI="${HOMEPAGE}/downloads/linux/${P}-${LNXARCH}.tar.bz2" + +LICENSE="Mendelay-EULA" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +RESTRICT="mirror strip" +RDEPEND="dev-libs/openssl:0.9.8 + media-libs/fontconfig + media-libs/freetype + media-libs/libpng:1.2" + +S="${WORKDIR}/${P}-${LNXARCH}" + +MENDELEY_INSTALL_DIR="/opt/${PN}" + +src_install() { + # install menu + domenu "share/applications/${PN}.desktop" + # Install commonly used icon sizes + for res in 16x16 22x22 32x32 48x48 64x64 128x128 ; do + insinto "/usr/share/icons/hicolor/${res}/apps" + doins "share/icons/hicolor/${res}/apps/${PN}.png" || \ + die "Installing icons failed." + done + insinto "/usr/share/pixmaps" + doins "share/icons/hicolor/48x48/apps/${PN}.png" || \ + die "Installing pixmap failed." + + # dodoc + dodoc "share/doc/${PN}/"* || die "Installing docs failed." + + # create directories for installation + dodir ${MENDELEY_INSTALL_DIR} || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/lib" || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/share" || die "dodir failed" + + # install binaries + mv "bin" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing bin failed." + mv "lib" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing libs failed." + mv "share/${PN}" "${D}${MENDELEY_INSTALL_DIR}/share" || \ + die "Installing shared files failed." + dosym "${MENDELEY_INSTALL_DIR}/bin/${PN}" "/opt/bin/${PN}" || \ + die "Installing launcher symlinks failed." +} + diff --git a/app-misc/mendeleydesktop/mendeleydesktop-0.9.9.ebuild b/app-misc/mendeleydesktop/mendeleydesktop-0.9.9.ebuild new file mode 100644 index 0000000..027add8 --- /dev/null +++ b/app-misc/mendeleydesktop/mendeleydesktop-0.9.9.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit eutils + +if [ "${ARCH}" = "amd64" ] ; then + LNXARCH="linux-x86_64" +else + LNXARCH="linux-i486" +fi + +DESCRIPTION="A free research management tool for desktop & web" +HOMEPAGE="http://www.mendeley.com/" +SRC_URI="${HOMEPAGE}/downloads/linux/${P}-${LNXARCH}.tar.bz2" + +LICENSE="Mendelay-EULA" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +RESTRICT="mirror strip" +RDEPEND="dev-libs/openssl:0.9.8 + media-libs/fontconfig + media-libs/freetype + media-libs/libpng:1.2" + +S="${WORKDIR}/${P}-${LNXARCH}" + +MENDELEY_INSTALL_DIR="/opt/${PN}" + +src_install() { + # install menu + domenu "share/applications/${PN}.desktop" + # Install commonly used icon sizes + for res in 16x16 22x22 32x32 48x48 64x64 128x128 ; do + insinto "/usr/share/icons/hicolor/${res}/apps" + doins "share/icons/hicolor/${res}/apps/${PN}.png" || \ + die "Installing icons failed." + done + insinto "/usr/share/pixmaps" + doins "share/icons/hicolor/48x48/apps/${PN}.png" || \ + die "Installing pixmap failed." + + # dodoc + dodoc "share/doc/${PN}/"* || die "Installing docs failed." + + # create directories for installation + dodir ${MENDELEY_INSTALL_DIR} || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/lib" || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/share" || die "dodir failed" + + # install binaries + mv "bin" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing bin failed." + mv "lib" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing libs failed." + mv "share/${PN}" "${D}${MENDELEY_INSTALL_DIR}/share" || \ + die "Installing shared files failed." + dosym "${MENDELEY_INSTALL_DIR}/bin/${PN}" "/opt/bin/${PN}" || \ + die "Installing launcher symlinks failed." +} + diff --git a/app-misc/mendeleydesktop/mendeleydesktop-1.0.1.ebuild b/app-misc/mendeleydesktop/mendeleydesktop-1.0.1.ebuild new file mode 100644 index 0000000..64d8ad2 --- /dev/null +++ b/app-misc/mendeleydesktop/mendeleydesktop-1.0.1.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit eutils + +if [ "${ARCH}" = "amd64" ] ; then + LNXARCH="linux-x86_64" +else + LNXARCH="linux-i486" +fi + +DESCRIPTION="A free research management tool for desktop & web" +HOMEPAGE="http://www.mendeley.com/" +SRC_URI="${HOMEPAGE}/downloads/linux/${P}-${LNXARCH}.tar.bz2" + +LICENSE="Mendelay-EULA" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +RESTRICT="mirror strip" +RDEPEND="dev-libs/openssl:0.9.8 + media-libs/fontconfig + media-libs/freetype + media-libs/libpng:1.2" + +S="${WORKDIR}/${PN}-1.0-${LNXARCH}" + +MENDELEY_INSTALL_DIR="/opt/${PN}" + +src_install() { + # install menu + domenu "share/applications/${PN}.desktop" + # Install commonly used icon sizes + for res in 16x16 22x22 32x32 48x48 64x64 128x128 ; do + insinto "/usr/share/icons/hicolor/${res}/apps" + doins "share/icons/hicolor/${res}/apps/${PN}.png" || \ + die "Installing icons failed." + done + insinto "/usr/share/pixmaps" + doins "share/icons/hicolor/48x48/apps/${PN}.png" || \ + die "Installing pixmap failed." + + # dodoc + dodoc "share/doc/${PN}/"* || die "Installing docs failed." + + # create directories for installation + dodir ${MENDELEY_INSTALL_DIR} || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/lib" || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/share" || die "dodir failed" + + # install binaries + mv "bin" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing bin failed." + mv "lib" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing libs failed." + mv "share/${PN}" "${D}${MENDELEY_INSTALL_DIR}/share" || \ + die "Installing shared files failed." + dosym "${MENDELEY_INSTALL_DIR}/bin/${PN}" "/opt/bin/${PN}" || \ + die "Installing launcher symlinks failed." +} + diff --git a/app-misc/mendeleydesktop/mendeleydesktop-1.0.ebuild b/app-misc/mendeleydesktop/mendeleydesktop-1.0.ebuild new file mode 100644 index 0000000..027add8 --- /dev/null +++ b/app-misc/mendeleydesktop/mendeleydesktop-1.0.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit eutils + +if [ "${ARCH}" = "amd64" ] ; then + LNXARCH="linux-x86_64" +else + LNXARCH="linux-i486" +fi + +DESCRIPTION="A free research management tool for desktop & web" +HOMEPAGE="http://www.mendeley.com/" +SRC_URI="${HOMEPAGE}/downloads/linux/${P}-${LNXARCH}.tar.bz2" + +LICENSE="Mendelay-EULA" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +RESTRICT="mirror strip" +RDEPEND="dev-libs/openssl:0.9.8 + media-libs/fontconfig + media-libs/freetype + media-libs/libpng:1.2" + +S="${WORKDIR}/${P}-${LNXARCH}" + +MENDELEY_INSTALL_DIR="/opt/${PN}" + +src_install() { + # install menu + domenu "share/applications/${PN}.desktop" + # Install commonly used icon sizes + for res in 16x16 22x22 32x32 48x48 64x64 128x128 ; do + insinto "/usr/share/icons/hicolor/${res}/apps" + doins "share/icons/hicolor/${res}/apps/${PN}.png" || \ + die "Installing icons failed." + done + insinto "/usr/share/pixmaps" + doins "share/icons/hicolor/48x48/apps/${PN}.png" || \ + die "Installing pixmap failed." + + # dodoc + dodoc "share/doc/${PN}/"* || die "Installing docs failed." + + # create directories for installation + dodir ${MENDELEY_INSTALL_DIR} || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/lib" || die "dodir failed" + dodir "${MENDELEY_INSTALL_DIR}/share" || die "dodir failed" + + # install binaries + mv "bin" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing bin failed." + mv "lib" "${D}${MENDELEY_INSTALL_DIR}" || die "Installing libs failed." + mv "share/${PN}" "${D}${MENDELEY_INSTALL_DIR}/share" || \ + die "Installing shared files failed." + dosym "${MENDELEY_INSTALL_DIR}/bin/${PN}" "/opt/bin/${PN}" || \ + die "Installing launcher symlinks failed." +} + diff --git a/app-office/homebank/ChangeLog b/app-office/homebank/ChangeLog new file mode 100644 index 0000000..fcf5d48 --- /dev/null +++ b/app-office/homebank/ChangeLog @@ -0,0 +1,74 @@ +# ChangeLog for app-office/homebank +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/app-office/homebank/ChangeLog,v 1.16 2010/02/17 22:47:09 calchan Exp $ + +*homebank-4.2.1 (17 Feb 2010) + + 17 Feb 2010; <calchan@gentoo.org> +homebank-4.2.1.ebuild: + Bugfix bump, thanks to Fabio Correa (bug #304515). + +*homebank-4.2 (11 Feb 2010) + + 11 Feb 2010; Denis Dupeyron <calchan@gentoo.org> +homebank-4.2.ebuild: + Version bump, bug #304515. + + 15 Dec 2009; Peter Volkov <pva@gentoo.org> metadata.xml: + metadata.xml: added required herd tag. + +*homebank-4.1 (04 Nov 2009) + + 04 Nov 2009; Denis Dupeyron <calchan@gentoo.org> -homebank-4.0.2.ebuild, + -homebank-4.1_beta.ebuild, +homebank-4.1.ebuild: + Version bump, thanks to Arseny Solokha (bug #291808). + +*homebank-4.1_beta (07 Oct 2009) + + 07 Oct 2009; Denis Dupeyron <calchan@gentoo.org> + +homebank-4.1_beta.ebuild: + Version bump. + +*homebank-4.0.3 (27 May 2009) + + 27 May 2009; Denis Dupeyron <calchan@gentoo.org> +homebank-4.0.3.ebuild: + Version bump. + + 18 Apr 2009; Denis Dupeyron <calchan@gentoo.org> ChangeLog: + Fixed typo in Changelog. + + 18 Apr 2009; Denis Dupeyron <calchan@gentoo.org> -homebank-3.7.ebuild, + -homebank-3.8.ebuild, -homebank-4.0.1.ebuild: + Removed old ebuilds in order to avoid fixing them. + + 18 Apr 2009; Denis Dupeyron <calchan@gentoo.org> homebank-4.0.2: + Fixed deps, bug #238971. Fixed econf dies by itself. + +*homebank-4.0.2 (18 Apr 2009) + + 18 Apr 2009; Denis Dupeyron <calchan@gentoo.org> +homebank-4.0.2.ebuild: + Version bump, bug #264973. + + 19 Mar 2009; Joseph Jezak <josejx@gentoo.org> homebank-4.0.1.ebuild: + Marked ~ppc for bug #260507. + +*homebank-4.0.1 (27 Dec 2008) + + 27 Dec 2008; Denis Dupeyron <calchan@gentoo.org> +homebank-4.0.1.ebuild: + Version bump, thanks to Viaken (bug #250304). + +*homebank-3.8 (23 Apr 2008) + + 23 Apr 2008; Denis Dupeyron <calchan@gentoo.org> +homebank-3.8.ebuild: + Version bump. + + 01 Apr 2008; Denis Dupeyron <calchan@gentoo.org> homebank-3.7.ebuild: + eautoconf was enough, thanks to Tiziano Müller. + + 01 Apr 2008; Denis Dupeyron <calchan@gentoo.org> homebank-3.7.ebuild: + Oops, forgot librsvg dependency. + +*homebank-3.7 (01 Apr 2008) + + 01 Apr 2008; Denis Dupeyron <calchan@gentoo.org> +metadata.xml, + +homebank-3.7.ebuild: + Initial commit, thanks to everybody on bug #139634. + diff --git a/app-office/homebank/Manifest b/app-office/homebank/Manifest new file mode 100644 index 0000000..0120262 --- /dev/null +++ b/app-office/homebank/Manifest @@ -0,0 +1,3 @@ +DIST homebank-4.3.tar.gz 2849525 RMD160 ed3ce83d64ba56ea3a10eb43d8ad1cfd438e4ade SHA1 5c2b22c5ab8d22ca26afdabf1e3c1b378e33692e SHA256 c63a918d9749d81237f5cf67d0c375f207b0c83257c12398943f5a2e98df8be4 +EBUILD homebank-4.3.ebuild 883 RMD160 4d7c39dfafe4cf886b79d57b4f2224ec381d7634 SHA1 7689971e0b3241cdeb105a288e752442b1c119df SHA256 6f426c9cfb8743c69b2cc418e520b5bdcd63464064e7088581c24e03fb889746 +MISC ChangeLog 2364 RMD160 f5a7d4ff9a06486fc892b8d275504b48851f2ee3 SHA1 a2f89f4c9bd3150c0d45a381db3a43591388dcba SHA256 b73b6ef5fb89b10ef51dc9a29ab5580308136142483fd80fcc14a866a50a43e9 diff --git a/app-office/homebank/homebank-4.3.ebuild b/app-office/homebank/homebank-4.3.ebuild new file mode 100644 index 0000000..3f77e8f --- /dev/null +++ b/app-office/homebank/homebank-4.3.ebuild @@ -0,0 +1,46 @@ +EAPI="2" + +inherit fdo-mime + +DESCRIPTION="Free, easy, personal accounting for everyone" +HOMEPAGE="http://homebank.free.fr/index.php" +SRC_URI="http://homebank.free.fr/public/${P}.tar.gz" +LICENSE="GPL-2" +SLOT="0" +IUSE="ofx" +KEYWORDS="~amd64 ~ppc ~x86" + +RDEPEND=">=x11-libs/gtk+-2.14 + >=dev-libs/glib-2.17 + sys-libs/zlib + ofx? ( >=dev-libs/libofx-0.7 )" +DEPEND="${RDEPEND} + dev-util/pkgconfig + >=dev-util/intltool-0.40.5" +RDEPEND="${RDEPEND} + gnome-base/librsvg" + +S="${WORKDIR}/${P/_/}" + +src_prepare() { + sed -i -e 's/true/TRUE/' src/import.c || die "sed failed" +} + +src_configure() { + econf $(use_with ofx) +} + +src_install() { + emake DESTDIR="${D}" install || die "Installation failed" + dodoc AUTHORS ChangeLog README +} + +pkg_postinst() { + fdo-mime_desktop_database_update + fdo-mime_mime_database_update +} + +pkg_postrm() { + fdo-mime_desktop_database_update + fdo-mime_mime_database_update +} diff --git a/app-office/pybliographer/Manifest b/app-office/pybliographer/Manifest new file mode 100644 index 0000000..68a34dc --- /dev/null +++ b/app-office/pybliographer/Manifest @@ -0,0 +1,2 @@ +DIST pybliographer-1.2.14.tar.gz 955153 RMD160 796c70e625319d3ab2f506599440fef4a560bb98 SHA1 24a464b2aed6bb223618b2e32e196af4e400881f SHA256 1b1bf6e15fd197100394f232640689187859513e1c1c44a2b0e3af4061ddf245 +EBUILD pybliographer-1.2.14.ebuild 1792 RMD160 b9f0128acec4c358b9c006b35c8dd76bf6a93413 SHA1 1bd5f02af28fd66bf29d4ffbc5a6aa028224ee49 SHA256 202d97360699becd1141e33b4abccc2226ce93813b91ae6d27a46d6b5aab5eb8 diff --git a/app-office/pybliographer/pybliographer-1.2.14.ebuild b/app-office/pybliographer/pybliographer-1.2.14.ebuild new file mode 100644 index 0000000..1024d3c --- /dev/null +++ b/app-office/pybliographer/pybliographer-1.2.14.ebuild @@ -0,0 +1,69 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/app-office/pybliographer/pybliographer-1.2.12-r1.ebuild,v 1.4 2011/01/27 15:11:22 arfrever Exp $ + +EAPI="3" +PYTHON_DEPEND="2:2.6" + +inherit autotools gnome2 python + +DESCRIPTION="Pybliographer is a tool for working with bibliographic databases" +HOMEPAGE="http://pybliographer.org/" +SRC_URI="mirror://sourceforge/pybliographer/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ppc x86" +IUSE="" + +DOCS="AUTHORS ChangeLog* NEWS TODO README" + +DEPEND=">=app-text/recode-3.6-r1 + app-text/scrollkeeper + dev-libs/glib:2 + dev-python/gconf-python:2 + dev-python/gnome-vfs-python:2 + dev-python/libgnome-python:2 + dev-python/pygobject:2 + dev-python/pygtk:2 + >=dev-python/python-bibtex-1.2.4" +RDEPEND="${DEPEND}" + +pkg_setup() { + python_set_active_version 2 + python_pkg_setup +} + +src_prepare() { + gnome2_src_prepare + + # Disable byte-compilation of Python modules. + sed -e "/import compileall/d" -i Makefile.am || die "sed failed" + + # Install Python modules into site-packages directories. + find -name Makefile.am | xargs sed -e "/^pybdir[[:space:]]*=[[:space:]]*/s:\$(datadir):$(python_get_sitedir):" -i || die "sed failed" + sed "s:\${datadir}/@PACKAGE@:$(python_get_sitedir)/@PACKAGE@:" -i etc/installer.in || die "sed failed" + sed -e "s:gladedir = \$(datadir):gladedir = $(python_get_sitedir):" -i Pyblio/GnomeUI/glade/Makefile.am || die "sed failed" + + eautoreconf +} + +src_configure() { + gnome2_src_configure --disable-depchecks +} + +src_install() { + gnome2_src_install + + python_convert_shebangs -r 2 "${ED}usr/bin" +} + +pkg_postinst() { + gnome2_pkg_postinst + python_mod_optimize pybliographer +} + +pkg_postrm() { + gnome2_pkg_postrm + python_mod_cleanup pybliographer +} diff --git a/dev-perl/Gtk2-ImageView/Gtk2-ImageView-0.05.ebuild b/dev-perl/Gtk2-ImageView/Gtk2-ImageView-0.05.ebuild new file mode 100644 index 0000000..bb1fc91 --- /dev/null +++ b/dev-perl/Gtk2-ImageView/Gtk2-ImageView-0.05.ebuild @@ -0,0 +1,21 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +MODULE_AUTHOR=RATCLIFFE +inherit perl-module + +DESCRIPTION="Perl binding for the GtkImageView image viewer widget." + +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="test" + +SRC_TEST="do" + +COMMON="dev-lang/perl + >=media-gfx/gtkimageview-1.6.3" +RDEPEND="${COMMON}" +DEPEND="dev-perl/glib-perl + dev-perl/gtk2-perl + ${COMMON}" diff --git a/dev-perl/Gtk2-ImageView/Manifest b/dev-perl/Gtk2-ImageView/Manifest new file mode 100644 index 0000000..f3f3708 --- /dev/null +++ b/dev-perl/Gtk2-ImageView/Manifest @@ -0,0 +1,2 @@ +DIST Gtk2-ImageView-0.05.tar.gz 43632 RMD160 5175398acfc3d8b2bd9995a5dc8fff102bf4aa52 SHA1 cc8506e717cd4f30483ff5e78ca9ef634deac7b7 SHA256 087186c3693acf196451cf59cc8b7f5cf9a7b05abe20d32dcbcba0822953fb80 +EBUILD Gtk2-ImageView-0.05.ebuild 430 RMD160 0aad40330adaa8952238b6062af2c7eed446f7f6 SHA1 d6a81e5eca4494cd2e42d60ad7ac5d3bb3594b0a SHA256 77fe14e2146848a6ecc6e164d505af1bd0db62b2ef24801506eb309ea61333f0 diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest new file mode 100644 index 0000000..cd2a6c4 --- /dev/null +++ b/dev-python/numpy/Manifest @@ -0,0 +1,13 @@ +AUX numpy-1.1.0-f2py.patch 1123 RMD160 ff90313cbe8282ac37b0cb98effa0ff6a03760c2 SHA1 5c37ea9be68782e533c7c2d64ca00e8e8ae648ea SHA256 cc67bc8ab7dba2febb91ba15cc51933021743a286c980e0068afd6fabdd065e7 +AUX numpy-1.3.0-alpha.patch 1210 RMD160 d92ca3fa7d671da1ff8e3e2e1a6b64469cf7142b SHA1 0a8740710d7b2e40b1a8899771b641999440558b SHA256 ea0da717e694338a1bca72f1b635309be15af2cdee206b50de4b38ce95701c64 +AUX numpy-1.3.0-arm-sh.patch 2166 RMD160 cc60f574ab7fe29968ebc56f9018c2427f01f6cc SHA1 59b4751c26abf837a69d8bd637bd9abb89344f72 SHA256 9b373c5b8886df971c350c44766ccdf165ffec6c2082f68704121965ad7a2f37 +AUX numpy-1.3.0-darwin-no-arch.patch 3016 RMD160 a35968a68fac400e14d5eeafb44e058825c17ed5 SHA1 35b3fa3b0ed149f2f9f906e7a81d7f3cd0260d58 SHA256 9058cb30c54314e4e8dc5e4c0e4be3178664067d1ae71b0bee9576293f8cd71d +AUX numpy-1.3.0-fenv-freebsd.patch 1177 RMD160 78a84e18836472bd9c657771c43a44e417ec3e19 SHA1 4dba898255df4784eac9e52633307991c12029de SHA256 2fa3ed9fdeb9dc529d51da4ba8a3a7ea4cc4bb9998fffa66426b1606f2c637b5 +AUX numpy-1.3.0-parisc.patch 474 RMD160 682971d65894aeb2e87de5f8eac717a8f7803318 SHA1 da6067bd782604119111d69fce06b7536d59f6ca SHA256 413af76d3b5518d2f544c4497110a3401d40a7ea713a7449ea8826facddbf225 +AUX numpy-1.4.0-interix.patch 478 RMD160 9a0290253238e09b824069d0026a5d2f00c90a8f SHA1 261e45c3feb068f033eed9b6468f5115ea418ca5 SHA256 4d6adcc1c66aa1399871c37f57e94ae7138c157ee5575945e83224a36c98c142 +DIST numpy-1.3-html.zip 3303495 RMD160 bd35c66c78574e6225de59a47cf161f3623c5119 SHA1 10799530be334cd7b1120a0b46f3c6f5deae5110 SHA256 933724b83300c9fc0779a579dad212ca8dcee230f1d892a56b977f3854d87c7e +DIST numpy-1.3-ref.pdf 3907485 RMD160 54fe28c711b49ccc160dceed05bafa4e605aec36 SHA1 1edc6a3467bb36c5f395c2ed4dc066394180c6f8 SHA256 c8420df5d25e7fd76e7662477787184d068f43fc340b6975fa1db9ec06c773e7 +DIST numpy-1.3-user.pdf 461480 RMD160 a8aa36e6a0c03784fa3147cc0f0967c7f3c726d6 SHA1 059eee01d65ea401e47f978e2d5ebf5f67973723 SHA256 ab99f999d33eb1d1100ddb5c995ba525edaa64efce51a1f06b65a8285779d636 +DIST numpy-1.5.0.tar.gz 2276377 RMD160 6c6a8ce32d32705b66966c7a58359a0f2f404549 SHA1 5e3c40e1dde20bd8fda7a2131cb1259af7689295 SHA256 06d2181c884c5937c7c475103dd55de4fe4842a9d91bab1ed0965dd973a4661a +EBUILD numpy-1.5.0.ebuild 4744 RMD160 dc53bc0e19db57d7f6e976a130af21f3604aa813 SHA1 d01051a577b21a8880383eda5ed406e7ec61ac0d SHA256 ea42e1b32c9659d5b12c2d45875867bbd528c3340f6cca0c5f18383fcaf58781 +MISC numpy-1.5.0.ebuild~ 4623 RMD160 75f44412f06549fb014cdea30a070a42cc4dc332 SHA1 31e05cf081da6c7e857e0fcdd0e372955c2d6a3b SHA256 aa56a999fda21c671601dc0b64d29e27eadd6061e45d5694199b6f98dc8e7fa4 diff --git a/dev-python/numpy/files/numpy-1.1.0-f2py.patch b/dev-python/numpy/files/numpy-1.1.0-f2py.patch new file mode 100644 index 0000000..1ec18a9 --- /dev/null +++ b/dev-python/numpy/files/numpy-1.1.0-f2py.patch @@ -0,0 +1,36 @@ +diff -Nur numpy/f2py/f2py.1 numpy/f2py.new/f2py.1 +--- numpy/f2py/f2py.1 2006-07-26 21:04:19.000000000 +0100 ++++ numpy/f2py.new/f2py.1 2007-02-14 12:16:47.000000000 +0000 +@@ -184,7 +184,7 @@ + + Optional Numarray 0.9 or higher partially supported. + +-numpy_distutils from Scipy (can be downloaded from F2PY homepage) ++numpy_distutils from Numpy (can be downloaded from F2PY homepage) + .SH "SEE ALSO" + python(1) + .SH BUGS +@@ -200,10 +200,8 @@ + + Mailing list: http://cens.ioc.ee/mailman/listinfo/f2py-users/ + +-Scipy website: http://www.numpy.org ++Numpy website: http://numeric.numpy.org + .SH COPYRIGHT + Copyright (c) 1999, 2000, 2001, 2002, 2003, 2004, 2005 Pearu Peterson + .SH LICENSE + NumPy License +-.SH VERSION +-2.45.241 +diff -Nur numpy/f2py/setup.py numpy/f2py.new/setup.py +--- numpy/f2py/setup.py 2006-10-03 05:35:22.000000000 +0100 ++++ numpy/f2py.new/setup.py 2007-02-14 12:16:41.000000000 +0000 +@@ -35,8 +35,7 @@ + + config.add_data_files('src/fortranobject.c', + 'src/fortranobject.h', +- 'f2py.1' + ) + + config.make_svn_version_py() + diff --git a/dev-python/numpy/files/numpy-1.3.0-alpha.patch b/dev-python/numpy/files/numpy-1.3.0-alpha.patch new file mode 100644 index 0000000..3aa5fe4 --- /dev/null +++ b/dev-python/numpy/files/numpy-1.3.0-alpha.patch @@ -0,0 +1,24 @@ +diff -ur numpy-1.3.0.orig/numpy/core/include/numpy/npy_cpu.h numpy-1.3.0/numpy/core/include/numpy/npy_cpu.h +--- numpy-1.3.0.orig/numpy/core/include/numpy/npy_cpu.h 2009-07-22 16:22:51.000000000 +0200 ++++ numpy-1.3.0/numpy/core/include/numpy/npy_cpu.h 2009-07-22 16:23:18.000000000 +0200 +@@ -44,6 +44,8 @@ + #define NPY_CPU_IA64 + #elif defined(__hppa__) + #define NPY_CPU_PARISC ++#elif defined(__alpha__) ++ #define NPY_CPU_ALPHA + #else + #error Unknown CPU, please report this to numpy maintainers with \ + information about your platform (OS, CPU and compiler) +diff -ur numpy-1.3.0.orig/numpy/core/include/numpy/npy_endian.h numpy-1.3.0/numpy/core/include/numpy/npy_endian.h +--- numpy-1.3.0.orig/numpy/core/include/numpy/npy_endian.h 2009-07-22 16:22:51.000000000 +0200 ++++ numpy-1.3.0/numpy/core/include/numpy/npy_endian.h 2009-07-22 16:23:04.000000000 +0200 +@@ -22,7 +22,7 @@ + #include "npy_cpu.h" + + #if defined(NPY_CPU_X86) || defined(NPY_CPU_AMD64)\ +- || defined(NPY_CPU_IA64) ++ || defined(NPY_CPU_IA64) || defined(NPY_CPU_ALPHA) + #define NPY_LITTLE_ENDIAN + #define NPY_BYTE_ORDER 1234 + #elif defined(NPY_CPU_PPC) || defined(NPY_CPU_SPARC)\
\ No newline at end of file diff --git a/dev-python/numpy/files/numpy-1.3.0-arm-sh.patch b/dev-python/numpy/files/numpy-1.3.0-arm-sh.patch new file mode 100644 index 0000000..798eebb --- /dev/null +++ b/dev-python/numpy/files/numpy-1.3.0-arm-sh.patch @@ -0,0 +1,50 @@ +diff -urNp numpy-1.3.0-old/numpy/core/include/numpy/npy_cpu.h numpy-1.3.0-new/numpy/core/include/numpy/npy_cpu.h +--- numpy-1.3.0-old/numpy/core/include/numpy/npy_cpu.h 2009-08-16 17:49:39.000000000 +0530 ++++ numpy-1.3.0-new/numpy/core/include/numpy/npy_cpu.h 2009-08-16 17:49:19.000000000 +0530 +@@ -9,6 +9,10 @@ + * NPY_CPU_S390 + * NPY_CPU_IA64 + * NPY_CPU_PARISC ++ * NPY_CPU_ARMEL ++ * NPY_CPU_ARMEB ++ * NPY_CPU_SH_LE ++ * NPY_CPU_SH_BE + */ + #ifndef _NPY_CPUARCH_H_ + #define _NPY_CPUARCH_H_ +@@ -46,6 +50,14 @@ + #define NPY_CPU_PARISC + #elif defined(__alpha__) + #define NPY_CPU_ALPHA ++#elif defined(__arm__) && defined(__ARMEL__) ++ #define NPY_CPU_ARMEL ++#elif defined(__arm__) && defined(__ARMEB__) ++ #define NPY_CPU_ARMEB ++#elif defined(__sh__) && defined(__LITTLE_ENDIAN__) ++ #define NPY_CPU_SH_LE ++#elif defined(__sh__) && defined(__BIG_ENDIAN__) ++ #define NPY_CPU_SH_BE + #else + #error Unknown CPU, please report this to numpy maintainers with \ + information about your platform (OS, CPU and compiler) +diff -urNp numpy-1.3.0-old/numpy/core/include/numpy/npy_endian.h numpy-1.3.0-new/numpy/core/include/numpy/npy_endian.h +--- numpy-1.3.0-old/numpy/core/include/numpy/npy_endian.h 2009-08-16 17:49:46.000000000 +0530 ++++ numpy-1.3.0-new/numpy/core/include/numpy/npy_endian.h 2009-08-16 17:48:39.000000000 +0530 +@@ -22,11 +22,15 @@ + #include "npy_cpu.h" + + #if defined(NPY_CPU_X86) || defined(NPY_CPU_AMD64)\ +- || defined(NPY_CPU_IA64) || defined(NPY_CPU_ALPHA) ++ || defined(NPY_CPU_IA64) || defined(NPY_CPU_ALPHA)\ ++ || defined(NPY_CPU_ARMEL)\ ++ || defined(NPY_CPU_SH_LE) + #define NPY_LITTLE_ENDIAN + #define NPY_BYTE_ORDER 1234 + #elif defined(NPY_CPU_PPC) || defined(NPY_CPU_SPARC)\ +- || defined(NPY_CPU_S390) || defined(NPY_CPU_PARISC) ++ || defined(NPY_CPU_S390) || defined(NPY_CPU_PARISC)\ ++ || defined(NPY_CPU_ARMEB)\ ++ || defined(NPY_CPU_SH_BE) + #define NPY_BIG_ENDIAN + #define NPY_BYTE_ORDER 4321 + #else diff --git a/dev-python/numpy/files/numpy-1.3.0-darwin-no-arch.patch b/dev-python/numpy/files/numpy-1.3.0-darwin-no-arch.patch new file mode 100644 index 0000000..e96611d --- /dev/null +++ b/dev-python/numpy/files/numpy-1.3.0-darwin-no-arch.patch @@ -0,0 +1,83 @@ +gfortran -v happily accepts any -arch X argument, but also happily dies +during compilation that it doesn't understand -arch argument. Hence, +testing if -arch is supported like this is kind of not working well. + +Since Apple does not officially ship fortran support (any), I wonder how +universal support could have crept into this piece of code all. They +don't even have an Apple GCC compiler with fortran support (like we do +with Gentoo Prefix). + +http://projects.scipy.org/numpy/ticket/1087 + + +--- numpy/distutils/fcompiler/gnu.py ++++ numpy/distutils/fcompiler/gnu.py +@@ -12,13 +12,6 @@ + + TARGET_R = re.compile("Target: ([a-zA-Z0-9_\-]*)") + +-# XXX: do we really need to check for target ? If the arch is not supported, +-# the return code should be != 0 +-_R_ARCHS = {"ppc": r"^Target: (powerpc-.*)$", +- "i686": r"^Target: (i686-.*)$", +- "x86_64": r"^Target: (i686-.*)$", +- "ppc64": r"^Target: (powerpc-.*)$",} +- + class GnuFCompiler(FCompiler): + compiler_type = 'gnu' + compiler_aliases = ('g77',) +@@ -215,6 +208,7 @@ + # OS X: GNU Fortran 95 (GCC) 4.1.0 + # GNU Fortran 95 (GCC) 4.2.0 20060218 (experimental) + # GNU Fortran (GCC) 4.3.0 20070316 (experimental) ++ # GNU Fortran (GCC) 4.2.1 (Apple Inc. build 5574) + + possible_executables = ['gfortran', 'f95'] + executables = { +@@ -241,46 +235,6 @@ + + g2c = 'gfortran' + +- # Note that this is here instead of GnuFCompiler as gcc < 4 uses a +- # different output format (which isn't as useful) than gcc >= 4, +- # and we don't have to worry about g77 being universal (as it can't be). +- def _can_target(self, cmd, arch): +- """Return true is the compiler support the -arch flag for the given +- architecture.""" +- newcmd = cmd[:] +- newcmd.extend(["-arch", arch, "-v"]) +- st, out = exec_command(" ".join(newcmd)) +- if st == 0: +- for line in out.splitlines(): +- m = re.search(_R_ARCHS[arch], line) +- if m: +- return True +- return False +- +- def _universal_flags(self, cmd): +- """Return a list of -arch flags for every supported architecture.""" +- if not sys.platform == 'darwin': +- return [] +- arch_flags = [] +- for arch in ["ppc", "i686"]: +- if self._can_target(cmd, arch): +- arch_flags.extend(["-arch", arch]) +- return arch_flags +- +- def get_flags(self): +- flags = GnuFCompiler.get_flags(self) +- arch_flags = self._universal_flags(self.compiler_f90) +- if arch_flags: +- flags[:0] = arch_flags +- return flags +- +- def get_flags_linker_so(self): +- flags = GnuFCompiler.get_flags_linker_so(self) +- arch_flags = self._universal_flags(self.linker_so) +- if arch_flags: +- flags[:0] = arch_flags +- return flags +- + def get_library_dirs(self): + opt = GnuFCompiler.get_library_dirs(self) + if sys.platform == 'win32': diff --git a/dev-python/numpy/files/numpy-1.3.0-fenv-freebsd.patch b/dev-python/numpy/files/numpy-1.3.0-fenv-freebsd.patch new file mode 100644 index 0000000..629fc76 --- /dev/null +++ b/dev-python/numpy/files/numpy-1.3.0-fenv-freebsd.patch @@ -0,0 +1,28 @@ +--- numpy/core/include/numpy/ufuncobject.h.orig 2009-07-28 15:04:42 -0400 ++++ numpy/core/include/numpy/ufuncobject.h 2009-07-28 15:05:58 -0400 +@@ -318,8 +318,10 @@ + + #elif defined(__GLIBC__) || defined(__APPLE__) || defined(__CYGWIN__) || defined(__MINGW32__) || (defined(__FreeBSD__) && (__FreeBSD_version >= 502114)) + +-#if defined(__GLIBC__) || defined(__APPLE__) || defined(__MINGW32__) || defined(__FreeBSD__) ++#if defined(__GLIBC__) || defined(__APPLE__) || defined(__MINGW32__) + #include <fenv.h> ++#elif defined(__FreeBSD__) ++#include "fenv/fenv.h" + #elif defined(__CYGWIN__) + #include "fenv/fenv.c" + #endif +--- numpy/numarray/_capi.c.orig 2009-07-28 15:18:13 -0400 ++++ numpy/numarray/_capi.c 2009-07-28 15:19:04 -0400 +@@ -8,8 +8,10 @@ + #include <sys/param.h> + #endif + +-#if defined(__GLIBC__) || defined(__APPLE__) || defined(__MINGW32__) || (defined(__FreeBSD__) && (__FreeBSD_version >= 502114)) ++#if defined(__GLIBC__) || defined(__APPLE__) || defined(__MINGW32__) + #include <fenv.h> ++#elif (defined(__FreeBSD__) && (__FreeBSD_version >= 502114)) ++#include "numpy/fenv/fenv.h" + #elif defined(__CYGWIN__) + #include "numpy/fenv/fenv.h" + #include "numpy/fenv/fenv.c" diff --git a/dev-python/numpy/files/numpy-1.3.0-parisc.patch b/dev-python/numpy/files/numpy-1.3.0-parisc.patch new file mode 100644 index 0000000..fd95f28 --- /dev/null +++ b/dev-python/numpy/files/numpy-1.3.0-parisc.patch @@ -0,0 +1,12 @@ +--- numpy-1.3.0/numpy/core/include/numpy/npy_cpu.h.orig 2009-04-05 10:09:20.000000000 +0200 ++++ numpy-1.3.0/numpy/core/include/numpy/npy_cpu.h 2009-07-15 17:13:35.000000000 +0200 +@@ -42,8 +42,7 @@ + #define NPY_CPU_S390 + #elif defined(__ia64) + #define NPY_CPU_IA64 +-#elif defined(__parisc__) +- /* XXX: Not sure about this one... */ ++#elif defined(__hppa__) + #define NPY_CPU_PARISC + #else + #error Unknown CPU, please report this to numpy maintainers with \ diff --git a/dev-python/numpy/files/numpy-1.4.0-interix.patch b/dev-python/numpy/files/numpy-1.4.0-interix.patch new file mode 100644 index 0000000..b755867 --- /dev/null +++ b/dev-python/numpy/files/numpy-1.4.0-interix.patch @@ -0,0 +1,15 @@ +Reported [2010.01.18]: http://projects.scipy.org/numpy/ticket/1365 + +diff -ru numpy-1.4.0.orig/numpy/core/setup.py numpy-1.4.0/numpy/core/setup.py +--- numpy-1.4.0.orig/numpy/core/setup.py 2010-01-15 16:49:14 +0100 ++++ numpy-1.4.0/numpy/core/setup.py 2010-01-15 17:02:27 +0100 +@@ -169,6 +169,9 @@ + priv = [] + pub = [] + ++ if os.uname()[0] == "Interix": ++ return priv, pub ++ + # Check for complex support + st = config.check_header('complex.h') + if st: diff --git a/dev-python/numpy/numpy-1.5.0.ebuild b/dev-python/numpy/numpy-1.5.0.ebuild new file mode 100644 index 0000000..1620c75 --- /dev/null +++ b/dev-python/numpy/numpy-1.5.0.ebuild @@ -0,0 +1,140 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-python/numpy/numpy-1.5.0.ebuild,v 1.1 2010/09/02 13:25:02 djc Exp $ + +EAPI="3" +PYTHON_DEPEND="2" +SUPPORT_PYTHON_ABIS="1" +RESTRICT_PYTHON_ABIS="3.*" + +inherit distutils eutils flag-o-matic toolchain-funcs versionator + +NP="${PN}-1.3" + +DESCRIPTION="Fast array and numerical python library" +HOMEPAGE="http://numpy.scipy.org/ http://pypi.python.org/pypi/numpy" +SRC_URI="mirror://sourceforge/numpy/${P}.tar.gz + doc? ( + http://docs.scipy.org/doc/${NP}.x/numpy-html.zip -> ${NP}-html.zip + http://docs.scipy.org/doc/${NP}.x/numpy-ref.pdf -> ${NP}-ref.pdf + http://docs.scipy.org/doc/${NP}.x/numpy-user.pdf -> ${NP}-user.pdf + )" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 -ppc -ppc64 ~s390 ~sh ~sparc ~x86 ~x86-fbsd ~x86-freebsd ~x86-interix ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~x64-solaris ~x86-solaris" +IUSE="doc lapack test" + +RDEPEND="dev-python/setuptools + lapack? ( virtual/cblas virtual/lapack )" +DEPEND="${RDEPEND} + lapack? ( dev-util/pkgconfig ) + test? ( >=dev-python/nose-0.10 ) + doc? ( app-arch/unzip )" + +pkg_setup() { + # See progress in http://projects.scipy.org/scipy/numpy/ticket/573 + # with the subtle difference that we don't want to break Darwin where + # -shared is not a valid linker argument + if [[ ${CHOST} != *-darwin* ]] ; then + append-ldflags -shared + fi + + # only one fortran to link with: + # linking with cblas and lapack library will force + # autodetecting and linking to all available fortran compilers + use lapack || return + [[ -z ${FC} ]] && FC=$(tc-getFC) + # when fortran flags are set, pic is removed. + FFLAGS="${FFLAGS} -fPIC" + NUMPY_FCONFIG="config_fc --noopt --noarch" + # workaround bug 335908 + [[ ${FC} == *gfortran* ]] && NUMPY_FCONFIG="${NUMPY_FCONFIG} --fcompiler=gnu95" + export NUMPY_FCONFIG +} + +src_unpack() { + unpack ${P}.tar.gz + if use doc; then + unzip -qo "${DISTDIR}"/${NP}-html.zip -d html || die + fi +} + +src_prepare() { + epatch "${FILESDIR}"/${PN}-1.1.0-f2py.patch + epatch "${FILESDIR}"/${PN}-1.3.0-fenv-freebsd.patch # bug 279487 + + # Gentoo patch for ATLAS library names + sed -i \ + -e "s:'f77blas':'blas':g" \ + -e "s:'ptf77blas':'blas':g" \ + -e "s:'ptcblas':'cblas':g" \ + -e "s:'lapack_atlas':'lapack':g" \ + numpy/distutils/system_info.py \ + || die "sed system_info.py failed" + + if use lapack; then + append-ldflags "$(pkg-config --libs-only-other cblas lapack)" + sed -i -e '/NO_ATLAS_INFO/,+1d' numpy/core/setup.py || die + local libdir="${EPREFIX}"/usr/$(get_libdir) + cat >> site.cfg <<-EOF + [atlas] + include_dirs = $(pkg-config --cflags-only-I \ + cblas | sed -e 's/^-I//' -e 's/ -I/:/g') + library_dirs = $(pkg-config --libs-only-L \ + cblas blas lapack | sed -e 's/^-L//' -e 's/ -L/:/g' -e 's/ //g'):${libdir} + atlas_libs = $(pkg-config --libs-only-l \ + cblas blas | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g') + lapack_libs = $(pkg-config --libs-only-l \ + lapack | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g') + [blas_opt] + include_dirs = $(pkg-config --cflags-only-I \ + cblas | sed -e 's/^-I//' -e 's/ -I/:/g') + library_dirs = $(pkg-config --libs-only-L \ + cblas blas | sed -e 's/^-L//' -e 's/ -L/:/g' -e 's/ //g'):${libdir} + libraries = $(pkg-config --libs-only-l \ + cblas blas | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g') + [lapack_opt] + library_dirs = $(pkg-config --libs-only-L \ + lapack | sed -e 's/^-L//' -e 's/ -L/:/g' -e 's/ //g'):${libdir} + libraries = $(pkg-config --libs-only-l \ + lapack | sed -e 's/^-l//' -e 's/ -l/, /g' -e 's/,.pthread//g') + EOF + else + export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None + fi + + epatch "${FILESDIR}"/${PN}-1.4.0-interix.patch +} + +src_compile() { + distutils_src_compile ${NUMPY_FCONFIG} +} + +src_test() { + testing() { + "$(PYTHON)" setup.py ${NUMPY_FCONFIG} build -b "build-${PYTHON_ABI}" install \ + --home="${S}/test-${PYTHON_ABI}" --no-compile || die "install test failed" + pushd "${S}/test-${PYTHON_ABI}/"lib* > /dev/null + PYTHONPATH=python "$(PYTHON)" -c "import numpy; numpy.test()" 2>&1 | tee test.log + grep -q '^ERROR' test.log && die "test failed" + popd > /dev/null + rm -fr test-${PYTHON_ABI} + } + python_execute_function testing +} + +src_install() { + [[ -z ${ED} ]] && local ED=${D} + distutils_src_install ${NUMPY_FCONFIG} + dodoc THANKS.txt DEV_README.txt COMPATIBILITY + rm -f "${ED}"/usr/lib/python*/site-packages/numpy/*.txt || die + docinto f2py + dodoc numpy/f2py/docs/*.txt || die "dodoc f2py failed" + doman numpy/f2py/f2py.1 || die "doman failed" + if use doc; then + insinto /usr/share/doc/${PF} + doins -r "${WORKDIR}"/html || die + doins "${DISTDIR}"/${NP}*pdf || die + fi +} diff --git a/dev-python/python-poppler/Manifest b/dev-python/python-poppler/Manifest new file mode 100644 index 0000000..91892a5 --- /dev/null +++ b/dev-python/python-poppler/Manifest @@ -0,0 +1,3 @@ +DIST pypoppler-0.10.0.tar.gz 292043 RMD160 f7a2616d84dc5438559775a1c5b3338149aafd9f SHA1 a442c3f06ce5d23e78658c6ba0962cfb8b0539e3 SHA256 1c09814a457375da607aa400cd8774b98c016c760ea513e3a22357cf4fca63b1 +EBUILD python-poppler-0.10.0.ebuild 841 RMD160 646dad0f12bb19165cac47181141d5d51f06a53b SHA1 7c16489214cfc6be6e329b98e84d7b47374bef19 SHA256 474ae3fa6e48104cb25bedb1dd259346f189710dde7b2d8c3c48b3f6f8edf4d7 +MISC python-poppler-0.10.0.ebuild~ 806 RMD160 35dd7fcd43e65916d96ae63254c98c06daa8b779 SHA1 22943cfc43285895715feef8cb54964bfae52a92 SHA256 64e384b81531b65b88c25c87e904b1c8236a1612c8c248345b2458024705abc0 diff --git a/games-strategy/freeciv/Manifest b/games-strategy/freeciv/Manifest new file mode 100644 index 0000000..590df63 --- /dev/null +++ b/games-strategy/freeciv/Manifest @@ -0,0 +1,2 @@ +DIST freeciv-2.2.3.tar.bz2 34607543 RMD160 c0c2010e52522ae77d457b389de74cd102c17e34 SHA1 8552c071c39f32c948a80ae74d95be4c9bdfcc16 SHA256 2db0753ca52cc023b35ae2df7dda5b3cc4987f186ec39ecd60e09bc29aa8065c +EBUILD freeciv-2.2.3.ebuild 3258 RMD160 85125045a4b26ee819b0d6b2af1d70a2de12222d SHA1 4512e6111b73dd64c008780f7286eb37a3e765b5 SHA256 0719cbb0265d5c9f8f75196600bc01be813cc4a837d1b0000afa83cb2333929c diff --git a/games-strategy/freeciv/freeciv-2.2.3.ebuild b/games-strategy/freeciv/freeciv-2.2.3.ebuild new file mode 100644 index 0000000..4c2f68c --- /dev/null +++ b/games-strategy/freeciv/freeciv-2.2.3.ebuild @@ -0,0 +1,124 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/games-strategy/freeciv/freeciv-2.2.2.ebuild,v 1.3 2010/09/12 15:38:10 hwoarang Exp $ + +EAPI=2 +inherit eutils gnome2-utils games-ggz games + +DESCRIPTION="multiplayer strategy game (Civilization Clone)" +HOMEPAGE="http://www.freeciv.org/" +SRC_URI="mirror://sourceforge/freeciv/${P}.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 ~ppc ~ppc64 x86" +IUSE="auth dedicated ggz gtk ipv6 nls readline sdl +sound" + +RDEPEND="readline? ( sys-libs/readline ) + sys-libs/zlib + app-arch/bzip2 + auth? ( virtual/mysql ) + !dedicated? ( + nls? ( virtual/libintl ) + gtk? ( x11-libs/gtk+:2 ) + sdl? ( + media-libs/libsdl[video] + media-libs/sdl-image[png] + media-libs/freetype + ) + !gtk? ( !sdl? ( x11-libs/gtk+:2 ) ) + sound? ( + media-libs/libsdl[audio] + media-libs/sdl-mixer + ) + ggz? ( games-board/ggz-gtk-client ) + media-libs/libpng + )" +DEPEND="${RDEPEND} + dev-util/pkgconfig + !dedicated? ( + nls? ( sys-devel/gettext ) + x11-proto/xextproto + )" + +src_prepare() { + # install the .desktop in /usr/share/applications + # install the icons in /usr/share/pixmaps + sed -i \ + -e 's:^\(desktopfiledir = \).*:\1/usr/share/applications:' \ + -e 's:^\(icon[0-9]*dir = \)$(prefix)\(.*\):\1/usr\2:' \ + -e 's:^\(icon[0-9]*dir = \)$(datadir)\(.*\):\1/usr/share\2:' \ + client/Makefile.in \ + server/Makefile.in \ + data/Makefile.in \ + data/icons/Makefile.in \ + || die "sed failed" + + # remove civclient manpage if dedicated server + if use dedicated ; then + epatch "${FILESDIR}"/${P}-clean-man.patch + fi +} + +src_configure() { + local myclient myopts + + if use dedicated ; then + myclient="no" + else + use sdl && myclient="${myclient} sdl" + use gtk && myclient="${myclient} gtk" + [[ -z ${myclient} ]] && myclient="gtk" # default to gtk if none specified + myopts=$(use_with ggz ggz-client) + fi + + egamesconf \ + --disable-dependency-tracking \ + --localedir=/usr/share/locale \ + --with-ggzconfig=/usr/bin \ + --enable-noregistry="${GGZ_MODDIR}" \ + $(use_enable auth) \ + $(use_enable ipv6) \ + $(use_enable nls) \ + $(use_with readline) \ + $(use_enable sound sdl-mixer) \ + ${myopts} \ + --enable-client="${myclient}" +} + +src_install() { + emake DESTDIR="${D}" install || die "emake install failed" + + if ! use dedicated ; then + # Create and install the html manual. It can't be done for dedicated + # servers, because the 'civmanual' tool is then not built. Also + # delete civmanual from the GAMES_BINDIR, because it's then useless. + # Note: to have it localized, it should be ran from _postinst, or + # something like that, but then it's a PITA to avoid orphan files... + ./manual/civmanual || die "civmanual failed" + dohtml manual*.html || die "dohtml failed" + rm -f "${D}/${GAMES_BINDIR}"/civmanual + use sdl && make_desktop_entry freeciv-sdl "Freeciv (SDL)" freeciv-client + fi + + dodoc ChangeLog NEWS doc/{BUGS,CodingStyle,HACKING,HOWTOPLAY,README*,TODO} + rm -rf "${D}$(games_get_libdir)" + + prepgamesdirs +} + +pkg_preinst() { + games_pkg_preinst + gnome2_icon_savelist +} + +pkg_postinst() { + games_pkg_postinst + games-ggz_update_modules + gnome2_icon_cache_update +} + +pkg_postrm() { + games-ggz_update_modules + gnome2_icon_cache_update +} diff --git a/gnome-extra/gedit-latex/Manifest b/gnome-extra/gedit-latex/Manifest new file mode 100644 index 0000000..3e25549 --- /dev/null +++ b/gnome-extra/gedit-latex/Manifest @@ -0,0 +1,2 @@ +DIST LaTeXPlugin-0.2.tar.gz 244202 RMD160 1ecd014c20a8fc2b990ea8c3f9b3322df87f3b82 SHA1 c1eabe1300a8dd1af0ed952ff7f2ec64e5dd24f9 SHA256 9062257a82d515a76cf4cb5f2c035d35640dcea17ad4db7be7f7d453916a418a +EBUILD gedit-latex-0.2.ebuild 1094 RMD160 86fe21963f32f23778229edfcb3fa48c077f66ba SHA1 6e68f445ca87d53c83bf46e09d2a2b8d92789b71 SHA256 4adbb5ee380fa735e1f4579b925e03590ac522056aa6f4d3e3ac83676a3cb902 diff --git a/gnome-extra/gedit-latex/gedit-latex-0.2.ebuild b/gnome-extra/gedit-latex/gedit-latex-0.2.ebuild new file mode 100644 index 0000000..984ce80 --- /dev/null +++ b/gnome-extra/gedit-latex/gedit-latex-0.2.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit eutils python + +DESCRIPTION="LaTeX plugin for gedit" +HOMEPAGE="http://live.gnome.org/Gedit/LaTeXPlugin" +SRC_URI="mirror://sourceforge/${PN}/LaTeXPlugin-${PV/_rc/rc}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" + +IUSE="" + +RDEPEND=">=app-editors/gedit-2.15.2[python] + dev-python/gnome-python + dev-python/dbus-python + dev-tex/rubber" + +DEPEND="" + +S="${WORKDIR}" + +src_compile() { + einfo "Nothing to compile" +} + +src_install() { + mv GeditLaTeXPlugin ${PN} + mv GeditLaTeXPlugin.gedit-plugin ${PN}.gedit-plugin + sed -i -e "s/GeditLaTeXPlugin/${PN}/g" ${PN}.gedit-plugin ${PN}/src/base/resources.py + rm ${PN}/ChangeLog + rm ${PN}/INSTALL + rm ${PN}/COPYING + insinto /usr/$(get_libdir)/gedit-2/plugins + doins -r * + fperms 755 /usr/$(get_libdir)/gedit-2/plugins/${PN}/util/eps2png.pl +} + +pkg_postinst() { + python_mod_optimize /usr/$(get_libdir)/gedit-2/plugins/${PN} +} + +pkg_postrm() { + python_mod_cleanup /usr/$(get_libdir)/gedit-2/plugins/${PN} +} diff --git a/gnome-extra/gnome-globalmenu/Manifest b/gnome-extra/gnome-globalmenu/Manifest new file mode 100644 index 0000000..820a8fa --- /dev/null +++ b/gnome-extra/gnome-globalmenu/Manifest @@ -0,0 +1,2 @@ +DIST gnome-globalmenu-0.7.10.tar.bz2 565247 RMD160 c4cea0ead15ac76255e5ec1a8db82c8bf2d0bdf0 SHA1 0b1a845ea038b4f44e28112463fec7aac300a0b6 SHA256 5ce762e99ad033a64bb99ebc7d30159ee3225a88663e1d8585a8499174a12b89 +EBUILD gnome-globalmenu-0.7.10.ebuild 1997 RMD160 450915d029c9b00f6a7ba6500d3d1b116382e05d SHA1 5d8205ce60d520691bfe4b3e47df4c46600f2218 SHA256 dfa8aad6be90147f1256d4cde54a25a0beef4440147b5d7f6ae85ecd5aa42363 diff --git a/media-gfx/ale/Manifest b/media-gfx/ale/Manifest new file mode 100644 index 0000000..a59b748 --- /dev/null +++ b/media-gfx/ale/Manifest @@ -0,0 +1,2 @@ +DIST ale-0.8.11.2.tar.gz 1373375 RMD160 f0aaec53befb5e9650fbd9fd2b77828d57b68833 SHA1 93d1e8a29a24d615b6d36868c26436cfe8ccf04e SHA256 bedea6f0d14b149b0b2419626182b7840a66f8bfa715ffddfd72dd57b125eefa +EBUILD ale-0.8.11.2.ebuild 1186 RMD160 12d04378d1a210753ced3f8041597c749db519a1 SHA1 3263689b360b9d98a02f0c60a4eaad14e5ad643c SHA256 08260ea03d4373fe67ae9beaf82c2ba85430518c6a2091b8473cb96e57cac620 diff --git a/media-gfx/ale/ale-0.8.11.2.ebuild b/media-gfx/ale/ale-0.8.11.2.ebuild new file mode 100644 index 0000000..6803fb0 --- /dev/null +++ b/media-gfx/ale/ale-0.8.11.2.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit eutils + +DESCRIPTION="ALE (Anti-Lamenessing Engine) is an image-processing program used for tasks such as image mosaicking, super-resolution, deblurring, noise reduction, anti-aliasing, and scene reconstruction." +HOMEPAGE="http://auricle.dyndns.org/ALE/" +SRC_URI="http://auricle.dyndns.org/ALE/download/${P}.tar.gz" +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~x86 ~ppc ~amd64" +IUSE="fftw imagemagick doc" +RDEPEND="fftw? ( =sci-libs/fftw-3* ) + imagemagick? ( media-gfx/imagemagick )" +DEPEND="${RDEPEND} + doc? ( app-text/docbook-sgml-utils )" + +src_compile() { + econf $(use_with imagemagick) $(use_with fftw fftw3) --enable-wmx \ + || die "econf failed" + emake || die "emake failed" + use doc && (emake -C doc chunk || die "emake chunk failed") +} + + +src_install() { + emake install DESTDIR="${D}" || die "emake install failed" + if use doc; then + # I don't know why it creates a .html for index, but it's bad + cp -f doc/index/.html doc/index/index.html + dohtml doc/index/* || die "dohtml failed" + fi +} diff --git a/media-gfx/gscan2pdf/Manifest b/media-gfx/gscan2pdf/Manifest new file mode 100644 index 0000000..13dc6dd --- /dev/null +++ b/media-gfx/gscan2pdf/Manifest @@ -0,0 +1,2 @@ +DIST gscan2pdf-0.9.27.tar.gz 358356 RMD160 f62a4f3cf5f630f425a824c265a6f27f1b6223a0 SHA1 802618c9b0273ac0951ddf5f95c0355e3e2d5fdf SHA256 a28a7ff8a7453d722b0572a2f43a464dbe14971f97190d14a61386221fae439d +EBUILD gscan2pdf-0.9.27.ebuild 1173 RMD160 481928eee4d416e39c3793ce633f080f7b07c1c2 SHA1 ed1e5bdadd0318cc9ec4e5691a7b4237fe8d6038 SHA256 204c54cbdb486d574eefdc2d5ce7df317b52bc84f8a42169e17eedaeb49b437d diff --git a/media-gfx/gscan2pdf/gscan2pdf-0.9.27.ebuild b/media-gfx/gscan2pdf/gscan2pdf-0.9.27.ebuild new file mode 100644 index 0000000..ae3bb80 --- /dev/null +++ b/media-gfx/gscan2pdf/gscan2pdf-0.9.27.ebuild @@ -0,0 +1,48 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI="2" +inherit perl-app + +DESCRIPTION="Create PDF of selected pages with File/Save PDF" +HOMEPAGE="http://gscan2pdf.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="adf doc djvu gocr tesseract unpaper +xdg" + +DEPEND="dev-lang/perl + >=dev-perl/config-general-2.40" + +RDEPEND=">=dev-perl/gtk2-perl-1.140-r1 + dev-perl/PDF-API2 + dev-perl/Gtk2-Ex-Simple-List + dev-perl/Gtk2-ImageView + dev-perl/Sane + dev-perl/prefork + >=dev-perl/Locale-gettext-1.05 + media-gfx/imagemagick[perl] + media-gfx/sane-backends + media-libs/tiff + xdg? ( x11-misc/xdg-utils ) + adf? ( media-gfx/sane-frontends ) + doc? ( dev-perl/Gtk2-Ex-PodViewer ) + djvu? ( app-text/djvu ) + gocr? ( app-text/gocr ) + tesseract? ( app-text/tesseract ) + unpaper? ( media-gfx/unpaper )" + +src_install() { + perl-module_src_install + dodoc History +} + +pkg_postinst() { + ewarn "Thunderbird users can't use the Email to PDF feature" + ewarn "because xdg-email doesn't support creating new emails" + ewarn "with attachments in Thunderbird." +} + diff --git a/media-gfx/mumbles/Manifest b/media-gfx/mumbles/Manifest new file mode 100644 index 0000000..fa275a7 --- /dev/null +++ b/media-gfx/mumbles/Manifest @@ -0,0 +1,3 @@ +DIST mumbles_0.4-1.tar.gz 78620 RMD160 ed563462242ed55812ac682eb5bb2e899a404488 SHA1 785f8b67c8aecc699750019e97b05a2d5b184bc5 SHA256 c2b741a9a0b54580833fa5a64fd129e964d261f852b34c63d6b42f3744920a94 +EBUILD mumbles-0.4.1.ebuild 858 RMD160 91288dc4feed411e87e90763af3f680dfa0c9c73 SHA1 4a4a6b3bbd9b491a77935b869e075a941ac4ca47 SHA256 c41bb2476843f0b06498fd716dbe597b800d1549d5b86d4afa915bbc45210e04 +MISC mumbles-0.4.1.ebuild~ 858 RMD160 8f15c937f43b5cd51bed302265f2587c5f5d7301 SHA1 3fd8090d2901235c1daeb2dd483a6ec954a348a9 SHA256 4001e4ccd76f6cbf01bb81ebf4e4516ed5d2fb38749558eb5944683b63939b15 diff --git a/media-gfx/mumbles/mumbles-0.4.1.ebuild b/media-gfx/mumbles/mumbles-0.4.1.ebuild new file mode 100644 index 0000000..c78335a --- /dev/null +++ b/media-gfx/mumbles/mumbles-0.4.1.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit distutils versionator +SOURCE_PV=$(replace_version_separator 2 '-') +UNPACK_PV=$(get_version_component_range 1-2) + +DESCRIPTION="A modern notification system, similar to libnotify or Growl on OSX" +HOMEPAGE="http://www.mumbles-project.org/" +SRC_URI="mirror://sourceforge/${PN}/${PN}_${SOURCE_PV}.tar.gz" +S="${WORKDIR}/${PN}-${UNPACK_PV}" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +#Depends: python-glade2 + +RDEPEND=" >=dev-python/pygtk-2.8 + dev-python/pycairo + dev-python/dbus-python" +DEPEND=" dev-python/setuptools" + +src_unpack() { + unpack ${A} + cd "${S}" + sed -i -e 's@"/usr/share/python-support/mumbles/src/"@"/usr/lib/python2.5/site-packages/src/"@' \ + bin/mumbles bin/mumbles-send || die "sed failed" +} diff --git a/media-gfx/xmorph/Manifest b/media-gfx/xmorph/Manifest new file mode 100644 index 0000000..9d2c1c7 --- /dev/null +++ b/media-gfx/xmorph/Manifest @@ -0,0 +1,2 @@ +DIST xmorph_20090926.tar.gz 1576680 RMD160 9c15f3a0dc72dd76375aa12e05f6068a8d5105ad SHA1 658fd5301c5eb592c4007dddf4b874febf1adf78 SHA256 24b4b8476ca70815a117cf2c440ab118d1ec345f8198aa8869281659908138d9 +EBUILD xmorph-20090929.ebuild 943 RMD160 8aaa5d4c2a5ce63d5c8a90221a436eae4fc5b574 SHA1 9e2e752d08d441caab52473ffb08a3151be59708 SHA256 5293f3ed0e473a09f99a22e4ecba1274609cf2314d7ed7712d1c0cc22a4b6d13 diff --git a/media-gfx/xmorph/xmorph-20090929.ebuild b/media-gfx/xmorph/xmorph-20090929.ebuild new file mode 100644 index 0000000..340d53c --- /dev/null +++ b/media-gfx/xmorph/xmorph-20090929.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit eutils + +DESCRIPTION="Library that implements digital image warping, known as morphing, along with GUIs." +HOMEPAGE="http://xmorph.sourceforge.net/" +SRC_URI="http://ftp.de.debian.org/debian/pool/main/x/xmorph/xmorph_20090926.tar.gz" +RESTRICT="nomirror" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="x86" +IUSE="gtk nls fftw" +# Options I'm ignoring: +# --with-waili --with-xmorph --with-tkmorph + +# --disable-gtktest \ +# --without-gtkmorph \ + +RDEPEND="nls? ( virtual/libintl ) + gtk? ( x11-libs/gtk+ )" + +DEPEND="nls? ( sys-devel/gettext ) + gtk? ( x11-libs/gtk+ ) + fftw? ( >=sci-libs/fftw-3 )" +src_compile() { + econf \ + $(use_enable nls) \ + $(use_with gtk gtkmorph) \ + $(use_with fftw) \ + || die "configure failed" + + emake || die "make failed" +} + +src_install() { + make DESTDIR="${D}" install || die "install failed" +} diff --git a/media-sound/songbird/Manifest b/media-sound/songbird/Manifest new file mode 100644 index 0000000..891b520 --- /dev/null +++ b/media-sound/songbird/Manifest @@ -0,0 +1,4 @@ +AUX songbird-1.1.1-symlink.patch 665 RMD160 f9a274af3d0e32d2cf74b72ff0d513c54f781551 SHA1 359869085cff640027dc233a85b92da72204f55e SHA256 d1519a433bef6cbddc72b413f847ea41860bec7adaf569745fc791bfd567c01b +DIST Songbird_1.1.2-1042_linux-i686.tar.gz 17349139 RMD160 810849bd944f27f742f00e4bc32e2022acaf2ddb SHA1 2d9e04afb1f0d7f11dafba4bd755aa482035aa75 SHA256 9967721edb029cdbd825511eceb13a5ae69fd077845948505907970aecad2793 +DIST Songbird_1.1.2-1042_linux-x86_64.tar.gz 18743760 RMD160 bfa87c9b4949afe709648f2af90cec43ac99fa6f SHA1 999fc2237d852cddce77e67a7298e80552b7d89d SHA256 b459f6b0652ee8078099b8f57a66a40b5be6466ea30ae30979f6d2e330874225 +EBUILD songbird-1.1.2.ebuild 2920 RMD160 99517e5fc78ab09d158d2d18814fef364a3f2fae SHA1 6bf952e058e8655e212b2be46233e3d69da83c28 SHA256 d64b269e7c7077739ddbc708e30f12c6b2cc235f74bd8f36f310af93d5ce4073 diff --git a/media-sound/songbird/files/songbird-1.1.1-symlink.patch b/media-sound/songbird/files/songbird-1.1.1-symlink.patch new file mode 100644 index 0000000..570f6ad --- /dev/null +++ b/media-sound/songbird/files/songbird-1.1.1-symlink.patch @@ -0,0 +1,25 @@ +diff -Naru o/Songbird/songbird n/Songbird/songbird +--- Songbird/songbird 2009-03-09 23:03:30.000000000 +0100 ++++ Songbird/songbird 2009-03-17 11:05:34.000000000 +0100 +@@ -310,6 +310,7 @@ + elif [ -x "$MOZ_DIST_BIN/$MOZ_APPRUNNER_NAME" ] + then + MOZ_PROGRAM=$MOZ_DIST_BIN/$MOZ_APPRUNNER_NAME ++ else + ## + ## Try resolving symlinks + ## +@@ -324,11 +325,11 @@ + break + fi + curdir=`dirname "$progname"` +- run_moz="$curdir/$MOZ_DEFAULT_NAME" ++ run_moz="$curdir/songbird-bin" + if [ -x "$run_moz" ]; then + cd "$curdir" + MOZ_DIST_BIN=`pwd` +- MOZ_PROGRAM=$MOZ_DIST_BIN/$MOZ_DEFAULT_NAME ++ MOZ_PROGRAM=$MOZ_DIST_BIN/songbird-bin + break + fi + done diff --git a/media-sound/songbird/songbird-1.1.2.ebuild b/media-sound/songbird/songbird-1.1.2.ebuild new file mode 100644 index 0000000..fc2c42d --- /dev/null +++ b/media-sound/songbird/songbird-1.1.2.ebuild @@ -0,0 +1,95 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit eutils versionator + +MY_VER="1.1.2-1042" +MY_PN="Songbird" +S="${WORKDIR}/${MY_PN}" + +DESCRIPTION="A multimedia player, inspired by iTunes" +HOMEPAGE="http://www.songbirdnest.com/" +SRC_URI="amd64? ( http://download.songbirdnest.com/installer/linux/x86_64/${MY_PN}_${MY_VER}_linux-x86_64.tar.gz ) + x86? ( http://download.songbirdnest.com/installer/linux/i686/${MY_PN}_${MY_VER}_linux-i686.tar.gz ) " +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="alsa oss esd ogg flac faac faad musepack ugly theora speex ffmpeg gnome jpeg" +RESTRICT="strip" +RDEPEND="${DEPEND} + alsa? ( media-plugins/gst-plugins-alsa ) + oss? ( media-plugins/gst-plugins-oss ) + esd? ( media-plugins/gst-plugins-esd ) + ogg? ( media-plugins/gst-plugins-ogg + media-plugins/gst-plugins-vorbis ) + gnome? ( media-plugins/gst-plugins-gconf + media-plugins/gst-plugins-gnomevfs ) + flac? ( media-plugins/gst-plugins-flac ) + faac? ( media-plugins/gst-plugins-faac ) + faad? ( media-plugins/gst-plugins-faad ) + ugly? ( media-libs/gst-plugins-ugly ) + musepack? ( media-plugins/gst-plugins-musepack ) + theora? ( media-plugins/gst-plugins-theora ) + speex? ( media-plugins/gst-plugins-speex ) + ffmpeg? ( media-plugins/gst-plugins-ffmpeg ) + jpeg? ( media-plugins/gst-plugins-jpeg )" +DEPEND="${RDEPEND} + x11-libs/libXdmcp + x11-libs/libXau + x11-libs/libXfixes + x11-libs/libXcursor + x11-libs/libXrandr + x11-libs/libXi + x11-libs/libXrender + x11-libs/libXext + x11-libs/libX11 + x11-libs/libXft + dev-libs/liboil + media-libs/gstreamer + media-libs/gst-plugins-base + media-plugins/gst-plugins-x + media-plugins/gst-plugins-xvideo + media-plugins/gst-plugins-lame + media-plugins/gst-plugins-mpeg2dec + media-plugins/gst-plugins-mad + >=net-misc/neon-0.26.4 + media-plugins/gst-plugins-neon + >=sys-libs/glibc-2.3.2 + >=x11-libs/gtk+-2.0.0 + x11-libs/pango" + +src_unpack() { + unpack ${A} + epatch "${FILESDIR}/${PN}-1.1.1-symlink.patch" +} + +src_install() { + insinto /opt/songbird + doins -r * + fperms 755 /opt/songbird/songbird + fperms 755 /opt/songbird/songbird-bin + dosym /opt/songbird/songbird /opt/bin/songbird-bin + + newicon "${S}"/chrome/icons/default/default.xpm ${PN}.xpm + make_desktop_entry ${PN} ${PN} ${PN}.xpm "AudioVideo;Player" +} + +pkg_postinst() { + echo + ewarn "Songbird is still under development!" + ewarn "This ebuild is not supported by Gentoo, so" + ewarn "please do not send any bugs at Gentoo's bugzilla." + einfo "If you need help, find it there:" + einfo "http://tnij.org/songbird-community" + einfo "or" + einfo "http://tnij.org/songbird-at-fgo" + einfo "" + einfo "If You need other music/video plugins, look at" + einfo "Your portage tree into media-plugins/gst-plugins-*," + einfo "but remember, that not all plugins are supported yet." + einfo "" + einfo "If You don't want too much deps on it package," + einfo "disable gnome support" + echo +} diff --git a/net-misc/remmina/Manifest b/net-misc/remmina/Manifest new file mode 100644 index 0000000..fe99525 --- /dev/null +++ b/net-misc/remmina/Manifest @@ -0,0 +1,5 @@ +DIST remmina-0.7.3.tar.gz 622850 RMD160 f340b1eb3959bb38bc7221bdf1a3c2c43a2b0a19 SHA1 014c121fe1930166330afe5dc30aa6317f5fa6a3 SHA256 2d36a747944f37fa01f4697595d39f120137c1a15e6ed7b3fa6de43fb5957d25 +DIST remmina-0.7.4.tar.gz 626240 RMD160 2d8a0d63400436d1f2a262c16b164394244e7e09 SHA1 77c15424abba9ee1934d48b887220fc49aafeecc SHA256 852bfe376282c5e51b5fe6255e7ab279e2d2314bad6e792fbf71c40266ddb153 +EBUILD remmina-0.7.3.ebuild 906 RMD160 6cafe4d401abba68c1f1267aef258c1f80e71155 SHA1 5f4eb3bbcaabf866770c49887acba11f43c04a0b SHA256 9bc646e3a5da5f82cc8244ba6f742a90d0b76b2d9df6569fd34f9864a82a6e05 +EBUILD remmina-0.7.4.ebuild 906 RMD160 6cafe4d401abba68c1f1267aef258c1f80e71155 SHA1 5f4eb3bbcaabf866770c49887acba11f43c04a0b SHA256 9bc646e3a5da5f82cc8244ba6f742a90d0b76b2d9df6569fd34f9864a82a6e05 +MISC remmina-0.7.3.ebuild~ 868 RMD160 2d41882b91b190450fb50152b6e0b958074ae597 SHA1 f1aab1ddf26de5c808a289bfa3c89ab3225eafa1 SHA256 95765be7b5dfa3809d662d1b48a0e082c0883568d8e070dfa5c55d60fb5f8d59 diff --git a/net-misc/remmina/remmina-0.7.3.ebuild b/net-misc/remmina/remmina-0.7.3.ebuild new file mode 100644 index 0000000..ea1bc83 --- /dev/null +++ b/net-misc/remmina/remmina-0.7.3.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit autotools gnome2 eutils + +DESCRIPTION="Gtk+/GNOME Remote Desktop Client" +HOMEPAGE="http://remmina.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +IUSE="avahi ssh vnc" + +RDEPEND=">=x11-libs/gtk+-2.16 + >=dev-libs/glib-2.20 + net-misc/rdesktop + >=dev-libs/libgcrypt-1.4.0 + >=dev-libs/libunique-1.0.8 + >=x11-libs/vte-0.12 + avahi? ( >=net-dns/avahi-0.6.2[gtk,dbus] ) + ssh? ( net-misc/openssh + >=net-libs/libssh-0.4 ) + vnc? ( net-misc/tigervnc + sys-libs/zlib + media-libs/jpeg + >=net-libs/gnutls-2.4 )" + +DEPEND="${RDEPEND}" + +docs="AUTHORS ChangeLog NEWS README" + +pkg_setup() { + G2CONF="${G2CONF} + $(use_enable avahi) + $(use_enable ssh) + $(use_enable vnc) + --enable-gcrypt --enable-vte" +} diff --git a/net-misc/remmina/remmina-0.7.4.ebuild b/net-misc/remmina/remmina-0.7.4.ebuild new file mode 100644 index 0000000..ea1bc83 --- /dev/null +++ b/net-misc/remmina/remmina-0.7.4.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=2 + +inherit autotools gnome2 eutils + +DESCRIPTION="Gtk+/GNOME Remote Desktop Client" +HOMEPAGE="http://remmina.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +IUSE="avahi ssh vnc" + +RDEPEND=">=x11-libs/gtk+-2.16 + >=dev-libs/glib-2.20 + net-misc/rdesktop + >=dev-libs/libgcrypt-1.4.0 + >=dev-libs/libunique-1.0.8 + >=x11-libs/vte-0.12 + avahi? ( >=net-dns/avahi-0.6.2[gtk,dbus] ) + ssh? ( net-misc/openssh + >=net-libs/libssh-0.4 ) + vnc? ( net-misc/tigervnc + sys-libs/zlib + media-libs/jpeg + >=net-libs/gnutls-2.4 )" + +DEPEND="${RDEPEND}" + +docs="AUTHORS ChangeLog NEWS README" + +pkg_setup() { + G2CONF="${G2CONF} + $(use_enable avahi) + $(use_enable ssh) + $(use_enable vnc) + --enable-gcrypt --enable-vte" +} diff --git a/net-misc/unison/Manifest b/net-misc/unison/Manifest new file mode 100644 index 0000000..a9b1232 --- /dev/null +++ b/net-misc/unison/Manifest @@ -0,0 +1,13 @@ +AUX unison-2.27.57-as-needed.patch 432 RMD160 a6b5baf799f686764c7dc9285541cae9178c4fbd SHA1 f7566f358355b0ecb5e000101721d189363bbdc4 SHA256 0284d72f0d9de0a824c2bc2a2f78baced3b84eb15ea10e0e6576ff52cf57686d +AUX unison-2.40.61-makefile.patch 523 RMD160 3ba6449ecddac57a91af646872b8de1fc88be16d SHA1 7329df33f09aa736991707f12c2bcc749bbaf5f1 SHA256 677f1380e5916c5c37ee17b022819d2013f02b3a6272ea8244484ac9b5941f08 +AUX unison-mymap.patch 466 RMD160 b317f3a79f11c2f9a91afa9801d196e8981f833b SHA1 5cc693b6bb2252a220b7db47227dd55cb0a7350e SHA256 1b73b9b4cf308b2f538fddfe95ee2ae42f5090015fbce132d2ae5789ea25a480 +DIST unison-2.40.16-manual.html 267159 RMD160 6b278d60711b3e7ac17b99a3f91bb3407d1cac8b SHA1 93958405ee07474ef9f1872ad8672fd884e84c34 SHA256 ffe6c85057ae8f8dcd76a02e2dfd1b37aa4681bc968f3be8945503547f038398 +DIST unison-2.40.16-manual.pdf 507350 RMD160 7b693ed1ad5507f0b88c5a21270c9a51193a9cfb SHA1 63733442a0f4538a7179d77001a04404574e58b3 SHA256 e49dcb0715152299fce11539c2d532bd4da9a4bb8af98670f8c61b6a13e241fe +DIST unison-2.40.16.tar.gz 2712897 RMD160 b6a7c3fb8cd30b96352ea3a3cdcdb566ad9c52aa SHA1 148b2b617f18743128ba978b1cadad05624ce22c SHA256 7307824ec50507cc796608ae1da1bfa01216f0e7140e1a7344b325c7354b59b0 +DIST unison-2.40.61-manual.html 267159 RMD160 ba193743e36bdd868f9576610b94e59e7baf8cb8 SHA1 b941d7a40d1e9968d72ead4d61375091a28c9028 SHA256 b88c6c3a24c359e306e702672cc8da904e72c367861ef2a3dc3df07566948223 +DIST unison-2.40.61-manual.pdf 507350 RMD160 5fa0283fcf68849313214270698c27edd5b2aa41 SHA1 1410adf5edaf4be22598550dbfae5f861b440586 SHA256 75ff6909abcf6f9ea0a981a8e3827218491fcdfb03c088c8dd1e43fcc9c687ef +DIST unison-2.40.61.tar.gz 2702722 RMD160 4a0bcc636d0e182be13723a5d9c676406824f638 SHA1 8645ce93a525b9561d51cceb9c4f9f08cea650e9 SHA256 e6114bf6a99d8bbe151250b7e28a74aa546d213f4f7f7914ca086a48b375277b +EBUILD unison-2.40.16.ebuild 2505 RMD160 e27e364ce131a0a01f5cf132cb3b3cfdc76a7d89 SHA1 9f0b74b304aaabdbb816e871926388b16f9585d0 SHA256 0021cdb06755170a751195a17ccff1170efb7e55a66ca49eef767cf02565616d +EBUILD unison-2.40.61.ebuild 2557 RMD160 6d2631b81ff5af20d3b1b55d48f17e9a2784dc93 SHA1 b45661c555a024c83e67ae3e40cc4cc263fb85c6 SHA256 8f7edf3ebb2636adacde6c963ecb83b490c50b858ffae63e4904ed8984b13ef8 +MISC unison-2.40.16.ebuild~ 2504 RMD160 bfeacb7069e2a15495a4308f191ed3a1ddd4b1c6 SHA1 0e6b6b32cf8f4352755fc4c1b04f85c7b98e9764 SHA256 c4ec7bbbedc42318a00e0c8521d6882c51d7a9fa1b47c59b39b883d2d7843436 +MISC unison-2.40.61.ebuild~ 2508 RMD160 257e0396f1caf90079d4f3a2b6de455eda021902 SHA1 d65b780dc71caf41de9bef92f707293c9601a9bd SHA256 46f6db43fe7bfca7d08cd5b7425f9143a8d24a3b5538943c423895911ce5d673 diff --git a/net-misc/unison/files/unison-2.27.57-as-needed.patch b/net-misc/unison/files/unison-2.27.57-as-needed.patch new file mode 100644 index 0000000..ff5be04 --- /dev/null +++ b/net-misc/unison/files/unison-2.27.57-as-needed.patch @@ -0,0 +1,11 @@ +--- unison-2.17.1/Makefile.OCaml ++++ unison-2.17.1/Makefile.OCaml +@@ -330,7 +330,7 @@ + + $(NAME)$(EXEC_EXT): $(CAMLOBJS) $(COBJS) + @echo Linking $@ +- $(CAMLC) -verbose $(CAMLFLAGS) -o $@ $(CFLAGS) $(CAMLLIBS) $(CLIBS) $^ ++ $(CAMLC) -verbose $(CAMLFLAGS) -o $@ $(CFLAGS) $(CAMLLIBS) $^ $(CLIBS) + + # Unfortunately -output-obj does not put .o files into the output, only .cmx + # files, so we have to use $(LD) to take care of COBJS. diff --git a/net-misc/unison/files/unison-2.40.61-makefile.patch b/net-misc/unison/files/unison-2.40.61-makefile.patch new file mode 100644 index 0000000..67ad9ec --- /dev/null +++ b/net-misc/unison/files/unison-2.40.61-makefile.patch @@ -0,0 +1,12 @@ +diff -Naur unison-2.40.61/Makefile unison-2.40.61_fix/Makefile +--- unison-2.40.61/Makefile 2010-10-08 17:44:59.000000000 +0200 ++++ unison-2.40.61_fix/Makefile 2011-02-07 22:54:33.000000000 +0100 +@@ -60,7 +60,7 @@ + # NAME, VERSION, and MAJORVERSION, automatically generated + -include Makefile.ProjectInfo + +-Makefile.ProjectInfo: mkProjectInfo.ml $(wildcard ../.bzr/branch/last-revision) ++Makefile.ProjectInfo: mkProjectInfo $(wildcard ../.bzr/branch/last-revision) + ./mkProjectInfo > $@ + + mkProjectInfo: mkProjectInfo.ml diff --git a/net-misc/unison/files/unison-mymap.patch b/net-misc/unison/files/unison-mymap.patch new file mode 100644 index 0000000..030eb0f --- /dev/null +++ b/net-misc/unison/files/unison-mymap.patch @@ -0,0 +1,13 @@ +Index: unison-2.32.52/update.mli +=================================================================== +--- unison-2.32.52.orig/update.mli ++++ unison-2.32.52/update.mli +@@ -1,7 +1,7 @@ + (* Unison file synchronizer: src/update.mli *) + (* Copyright 1999-2009, Benjamin C. Pierce (see COPYING for details) *) + +-module NameMap : Map.S with type key = Name.t ++module NameMap : MyMap.S with type key = Name.t + + type archive = + ArchiveDir of Props.t * archive NameMap.t diff --git a/net-misc/unison/unison-2.40.16.ebuild b/net-misc/unison/unison-2.40.16.ebuild new file mode 100644 index 0000000..4baf8f7 --- /dev/null +++ b/net-misc/unison/unison-2.40.16.ebuild @@ -0,0 +1,87 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/net-misc/unison/unison-2.32.52.ebuild,v 1.4 2010/08/05 06:16:50 aballier Exp $ + +EAPI="2" + +inherit eutils versionator + +IUSE="gtk doc static debug threads +ocamlopt test" + +DESCRIPTION="Two-way cross-platform file synchronizer" +HOMEPAGE="http://www.cis.upenn.edu/~bcpierce/unison/" +LICENSE="GPL-2" +SLOT="$(get_version_component_range 1-2 ${PV})" +KEYWORDS="~amd64 ~ppc ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos ~sparc-solaris" + +# ocaml version so we are sure it has ocamlopt use flag +DEPEND=">=dev-lang/ocaml-3.10.2[ocamlopt?] + gtk? ( >=dev-ml/lablgtk-2.2 ) + test? ( || ( dev-util/ctags virtual/emacs ) )" + +RDEPEND="gtk? ( >=dev-ml/lablgtk-2.2 + || ( net-misc/x11-ssh-askpass net-misc/ssh-askpass-fullscreen ) ) + !net-misc/unison:0 + app-admin/eselect-unison" + +#PDEPEND="gtk? ( media-fonts/font-schumacher-misc )" + +SRC_URI="http://www.cis.upenn.edu/~bcpierce/unison/download/releases/${P}/${P}.tar.gz + doc? ( http://www.cis.upenn.edu/~bcpierce/unison/download/releases/${P}/${P}-manual.pdf + http://www.cis.upenn.edu/~bcpierce/unison/download/releases/${P}/${P}-manual.html )" + +src_prepare() { + #epatch "${FILESDIR}/${PN}-2.27.57-as-needed.patch" + epatch "${FILESDIR}/${PN}-mymap.patch" +} + +src_compile() { + local myconf + + if use threads; then + myconf="$myconf THREADS=true" + fi + + if use static; then + myconf="$myconf STATIC=true" + fi + + if use debug; then + myconf="$myconf DEBUGGING=true" + fi + + if use gtk; then + myconf="$myconf UISTYLE=gtk2" + else + myconf="$myconf UISTYLE=text" + fi + + use ocamlopt || myconf="$myconf NATIVE=false" + + # Discard cflags as it will try to pass them to ocamlc... + emake $myconf CFLAGS="" buildexecutable || die "error making unsion" +} + +src_test() { + emake selftest || die "selftest failed" +} + +src_install () { + # install manually, since it's just too much + # work to force the Makefile to do the right thing. + newbin unison unison-${SLOT} || die + dodoc BUGS.txt CONTRIB INSTALL NEWS \ + README ROADMAP.txt TODO.txt || die + + if use doc; then + dohtml "${DISTDIR}/${P}-manual.html" || die + dodoc "${DISTDIR}/${P}-manual.pdf" || die + fi + use ocamlopt || export STRIP_MASK="*/bin/*" +} + +pkg_postinst() { + elog "Unison now uses SLOTs, so you can specify servercmd=/usr/bin/unison-${SLOT}" + elog "in your profile files to access exactly this version over ssh." + elog "Or you can use 'eselect unison' to set the version." +} diff --git a/net-misc/unison/unison-2.40.61.ebuild b/net-misc/unison/unison-2.40.61.ebuild new file mode 100644 index 0000000..6173ddb --- /dev/null +++ b/net-misc/unison/unison-2.40.61.ebuild @@ -0,0 +1,88 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/net-misc/unison/unison-2.32.52.ebuild,v 1.4 2010/08/05 06:16:50 aballier Exp $ + +EAPI="2" + +inherit eutils versionator + +IUSE="gtk doc static debug threads +ocamlopt test" + +DESCRIPTION="Two-way cross-platform file synchronizer" +HOMEPAGE="http://www.cis.upenn.edu/~bcpierce/unison/" +LICENSE="GPL-2" +SLOT="$(get_version_component_range 1-2 ${PV})" +KEYWORDS="~amd64 ~ppc ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos ~sparc-solaris" + +# ocaml version so we are sure it has ocamlopt use flag +DEPEND=">=dev-lang/ocaml-3.10.2[ocamlopt?] + gtk? ( >=dev-ml/lablgtk-2.2 ) + test? ( || ( dev-util/ctags virtual/emacs ) )" + +RDEPEND="gtk? ( >=dev-ml/lablgtk-2.2 + || ( net-misc/x11-ssh-askpass net-misc/ssh-askpass-fullscreen ) ) + !net-misc/unison:0 + app-admin/eselect-unison" + +#PDEPEND="gtk? ( media-fonts/font-schumacher-misc )" + +SRC_URI="http://www.cis.upenn.edu/~bcpierce/unison/download/releases/${P}/${P}.tar.gz + doc? ( http://www.cis.upenn.edu/~bcpierce/unison/download/releases/${P}/${P}-manual.pdf + http://www.cis.upenn.edu/~bcpierce/unison/download/releases/${P}/${P}-manual.html )" + +src_prepare() { + epatch "${FILESDIR}/${PN}-2.40.61-makefile.patch" + #epatch "${FILESDIR}/${PN}-2.27.57-as-needed.patch" + #epatch "${FILESDIR}/${PN}-mymap.patch" +} + +src_compile() { + local myconf + + if use threads; then + myconf="$myconf THREADS=true" + fi + + if use static; then + myconf="$myconf STATIC=true" + fi + + if use debug; then + myconf="$myconf DEBUGGING=true" + fi + + if use gtk; then + myconf="$myconf UISTYLE=gtk2" + else + myconf="$myconf UISTYLE=text" + fi + + use ocamlopt || myconf="$myconf NATIVE=false" + + # Discard cflags as it will try to pass them to ocamlc... + emake $myconf CFLAGS="" buildexecutable || die "error making unsion" +} + +src_test() { + emake selftest || die "selftest failed" +} + +src_install () { + # install manually, since it's just too much + # work to force the Makefile to do the right thing. + newbin unison unison-${SLOT} || die + dodoc BUGS.txt CONTRIB INSTALL NEWS \ + README ROADMAP.txt TODO.txt || die + + if use doc; then + dohtml "${DISTDIR}/${P}-manual.html" || die + dodoc "${DISTDIR}/${P}-manual.pdf" || die + fi + use ocamlopt || export STRIP_MASK="*/bin/*" +} + +pkg_postinst() { + elog "Unison now uses SLOTs, so you can specify servercmd=/usr/bin/unison-${SLOT}" + elog "in your profile files to access exactly this version over ssh." + elog "Or you can use 'eselect unison' to set the version." +} diff --git a/sci-mathematics/sage/Manifest b/sci-mathematics/sage/Manifest new file mode 100644 index 0000000..9e550e3 --- /dev/null +++ b/sci-mathematics/sage/Manifest @@ -0,0 +1,18 @@ +AUX sage-4.3.3-arpack-from-scipy.patch 713 RMD160 bee944458fc619422151b063db36aa6867f020f7 SHA1 39e898ba895347554de202dcdab5e9ccb0fd8890 SHA256 2ae65bd4ce9abba1d77952681aa60bf0ca14b7da72141f0b20b50620fa5faf22 +AUX sage-4.3.3-delaunay-from-matplotlib.patch 374 RMD160 ef5fee82767a4d3065caa46901b16936fd22e6d8 SHA1 a1c21862872774134212900c7d412d272b25488a SHA256 39408b85e3b2ba4bddf03e44d082dd7e942b5af060f41e77e2a482f85ddff52b +AUX sage-4.3.4-site-packages.patch 1325 RMD160 e1cc9612c6b25198f3499ff04056895ff591c66b SHA1 e8a52d46fac72d214faa401d56dffe95a82538eb SHA256 5f26e3abfd01a90007cb9b54190fde4c92e3dce31c12c5f852483a778bc5b698 +AUX sage-4.4.2-flint.patch 349 RMD160 b54e4cc61ffcdb45e181885e36137e9112a0e723 SHA1 33b5f818bf1086c872b06e34f8d1bb71f6df3cef SHA256 1d3663658a7ab36d5102a2acb14bad6e170cfb97caea568f43b27067bc994241 +AUX sage-4.4.2-jinja2.patch 11049 RMD160 9a307cac819d27713420392c63f51ee7ea404df8 SHA1 a368e0d0b78311d613a5ddbc5065ad6a3f7f336b SHA256 d54d029e511c78afc8f2466bf2ab9948c1ea5680aeb7271c68b7b440e4da1676 +AUX sage-4.4.4-extra-stdc99.patch 523 RMD160 3a1ffca54eae6e442a866089c5f1c1ce627b17b9 SHA1 9b3c357266915d2dec423f1991d50d041d57a44c SHA256 29232bc1c6b7da442c321dfdba674caf2d93e91f6b75a721f980fad6a4fe52e8 +AUX 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e30c9981dff53532d34d4ae6e5f91bf70169a866195b831300b102a9471e59bd +AUX trac-9221-matplotlib-update.patch 2235 RMD160 5cda3ce62bc7d5f405db120d07ac676e8bf45b30 SHA1 1238e6968bbd964ebbdaef69c1bb7745646aee71 SHA256 f0042068760bad8b9c2a6df98b63b8c8a847b20d701fb5f7b69c9691c6ddc085 +AUX trac_9567-cycle_basis.patch 2899 RMD160 cf599f8789c4124f8bf0e17910c86fe940540e54 SHA1 a9ff5f8615db06731265804e8fcece2114094b37 SHA256 3f8a1d668fa17dec3357c745c883f2cebae5624eb867a86930ee3fb251cc932d +AUX trac_9567-networkx-1.2.patch 16364 RMD160 2bf3db747b62ad83d620ee15803cd6b451a46faf SHA1 d32a525c1b7fd974b1f4efa05ac249d244dce3d4 SHA256 93a362a66424f575c8774714c89efabd8ffdd9a566ae988648741ea1123772c9 +AUX trac_9808_numpy_doctest_change.patch 1671 RMD160 62b1d7e71d2e87e122ab70522083d67600e739b8 SHA1 e42bfe3fae7668dc1037892541cbab81c9d743ec SHA256 104c936134559ca06525b9b90ff23c647be2d0fd0ed2ba260c364612e3359415 +DIST sage-4.5.3.tar.bz2 48888341 RMD160 669daee24ca8530769637530209dc8f7fbfc51d5 SHA1 c1f542c5cbc4db8a894c55c720f66eceb436a83c SHA256 669b1f15d9ce667fa39e0d6598f400efadceb7aa43f6c756c134b31f030c352a +EBUILD sage-4.5.3.ebuild 11449 RMD160 0076bed5dc78da7392c97a0618091dd24a6e5606 SHA1 c8294aa263e77b4e172c09097cc46d0b999aa6cf SHA256 a13f13e2bb08e73ea348c198be342bb151fac75949ea54277e824f45d1e217e6 +MISC sage-4.5.3.ebuild~ 11448 RMD160 1200092c7a06b454bc02ceffebfb4d42b647101a SHA1 eb5e1eebb3bbb2e5d63b6a989fe19bb98d37b760 SHA256 fd10f59b95409709e1fad8ef03a5fb614388c7fa30446412c4e47a97ccd5b077 diff --git a/sci-mathematics/sage/files/sage-4.3.3-arpack-from-scipy.patch b/sci-mathematics/sage/files/sage-4.3.3-arpack-from-scipy.patch new file mode 100644 index 0000000..de1c802 --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.3.3-arpack-from-scipy.patch @@ -0,0 +1,20 @@ +--- sage/numerical/test.py.orig 2010-02-04 18:36:20.845887211 +0000 ++++ sage/numerical/test.py 2010-02-04 18:36:54.362885056 +0000 +@@ -9,7 +9,7 @@ + sage: from scipy.sparse.linalg import dsolve + sage: from scipy import interpolate + sage: from scipy import sparse +-sage: import arpack ++sage: from scipy.sparse.linalg.eigen.arpack import speigs + + #Test arpack + #This matrix is the finite difference approximation to +@@ -24,7 +24,7 @@ + sage: n[2,:]=-1 + sage: A=sparse.spdiags(n,[-1,0,1],int(500),int(500)) + sage: A=aslinearoperator(A) +-sage: e,v=arpack.speigs.ARPACK_eigs(A.matvec,500,6,which='SM') ++sage: e,v=speigs.ARPACK_eigs(A.matvec,500,6,which='SM') + sage: e[0]*float(501/pi)**2 + 0.999............ + """ diff --git a/sci-mathematics/sage/files/sage-4.3.3-delaunay-from-matplotlib.patch b/sci-mathematics/sage/files/sage-4.3.3-delaunay-from-matplotlib.patch new file mode 100644 index 0000000..c8d2636 --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.3.3-delaunay-from-matplotlib.patch @@ -0,0 +1,11 @@ +--- sage/plot/plot3d/list_plot3d.py.orig 2010-02-04 16:59:26.431145424 +0000 ++++ sage/plot/plot3d/list_plot3d.py 2010-02-04 17:00:14.883022519 +0000 +@@ -207,7 +207,7 @@ + return G + + def list_plot3d_tuples(v,interpolation_type, texture, **kwds): +- import delaunay ++ from matplotlib import delaunay + import numpy + import scipy + from random import random diff --git a/sci-mathematics/sage/files/sage-4.3.4-site-packages.patch b/sci-mathematics/sage/files/sage-4.3.4-site-packages.patch new file mode 100644 index 0000000..01bff72 --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.3.4-site-packages.patch @@ -0,0 +1,29 @@ +--- setup.py.orig 2010-04-02 08:54:57.681058076 +0000 ++++ setup.py 2010-04-03 09:17:30.479619709 +0000 +@@ -38,25 +38,11 @@ + else: + SAGE_VERSION = os.environ['SAGE_VERSION'] + +-SITE_PACKAGES = '%s/lib/python/site-packages/'%SAGE_LOCAL +-if not os.path.exists(SITE_PACKAGES): +- SITE_PACKAGES = '%s/lib/python2.5/site-packages/'%SAGE_LOCAL +- if not os.path.exists(SITE_PACKAGES): +- SITE_PACKAGES = '%s/lib/python2.4/site-packages/'%SAGE_LOCAL +- if not os.path.exists(SITE_PACKAGES) and os.environ.has_key('SAGE_DEBIAN'): +- SITE_PACKAGES = '%s/lib/python2.5/site-packages/'%SAGE_LOCAL +- os.system('mkdir -p "%s"'%SITE_PACKAGES) +- if not os.path.exists(SITE_PACKAGES): +- raise RuntimeError, "Unable to find site-packages directory (see setup.py file in sage python code)." ++SITE_PACKAGES = 'build' + + if not os.path.exists('build/sage'): + os.makedirs('build/sage') + +-sage_link = SITE_PACKAGES + '/sage' +-if not os.path.islink(sage_link) or not os.path.exists(sage_link): +- os.system('rm -rf "%s"'%sage_link) +- os.system('cd %s; ln -sf ../../../../devel/sage/build/sage .'%SITE_PACKAGES) +- + include_dirs = ['%s/include'%SAGE_LOCAL, \ + '%s/include/csage'%SAGE_LOCAL, \ + ## this is included, but doesn't actually exist diff --git a/sci-mathematics/sage/files/sage-4.4.2-flint.patch b/sci-mathematics/sage/files/sage-4.4.2-flint.patch new file mode 100644 index 0000000..298da9a --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.4.2-flint.patch @@ -0,0 +1,11 @@ +--- sage/libs/flint/flint.pxd.orig 2010-05-24 10:53:07.676486281 +1200 ++++ sage/libs/flint/flint.pxd 2010-05-24 14:35:38.169806635 +1200 +@@ -4,4 +4,7 @@ + cdef long FLINT_D_BITS + + cdef unsigned long FLINT_BIT_COUNT(unsigned long) +- void flint_stack_cleanup() ++ ++cdef extern from "memory-manager.h": ++ ++ cdef void flint_stack_cleanup() diff --git a/sci-mathematics/sage/files/sage-4.4.2-jinja2.patch b/sci-mathematics/sage/files/sage-4.4.2-jinja2.patch new file mode 100644 index 0000000..4baac66 --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.4.2-jinja2.patch @@ -0,0 +1,319 @@ +--- sage/ext/gen_interpreters.py.orig 2010-05-22 16:10:12.349829112 +1200 ++++ sage/ext/gen_interpreters.py 2010-05-22 16:09:19.408829582 +1200 +@@ -98,8 +98,8 @@ + + import os + import re +-from jinja import Environment +-from jinja.datastructure import ComplainingUndefined ++from jinja2 import Environment ++from jinja2.runtime import StrictUndefined + from collections import defaultdict + from distutils.extension import Extension + +@@ -114,12 +114,12 @@ + ############################## + + +-# We share a single jinja environment among all templating in this file. +-# We use trim_blocks=True (which means that we ignore white space after +-# "%}" jinja command endings), and set undefined_singleton to complain +-# if we use an undefined variable. +-jinja_env = Environment(trim_blocks=True, +- undefined_singleton=ComplainingUndefined) ++# We share a single jinja2 environment among all templating in this ++# file. We use trim_blocks=True (which means that we ignore white ++# space after "%}" jinja2 command endings), and set undefined to ++# complain if we use an undefined variable. ++jinja_env = Environment(trim_blocks=True, undefined=StrictUndefined) ++ + # Allow 'i' as a shorter alias for the built-in 'indent' filter. + jinja_env.filters['i'] = jinja_env.filters['indent'] + +@@ -169,7 +169,7 @@ + if len(template) > 0 and template[0] == '\n': + template = template[1:] + +- # It looks like Jinja automatically removes one trailing newline? ++ # It looks like Jinja2 automatically removes one trailing newline? + if len(template) > 0 and template[-1] == '\n': + template = template + '\n' + +@@ -424,8 +424,8 @@ + return je(""" + {# XXX Variables here (and everywhere, really) should actually be Py_ssize_t #} + cdef int _n_{{ name }} +- cdef {{ self.cython_array_type() }} _{{ name }} +-""", self=self, name=name) ++ cdef {{ myself.cython_array_type() }} _{{ name }} ++""", myself=self, name=name) + + def alloc_chunk_data(self, name, len): + r""" +@@ -444,13 +444,13 @@ + """ + return je(""" + self._n_{{ name }} = {{ len }} +- self._{{ name }} = <{{ self.c_ptr_type() }}>sage_malloc(sizeof({{ self.c_decl_type() }}) * {{ len }}) ++ self._{{ name }} = <{{ myself.c_ptr_type() }}>sage_malloc(sizeof({{ myself.c_decl_type() }}) * {{ len }}) + if self._{{ name }} == NULL: raise MemoryError +-{% if self.needs_cython_init_clear() %} ++{% if myself.needs_cython_init_clear() %} + for i in range({{ len }}): +- {{ self.cython_init('self._%s[i]' % name) }} ++ {{ myself.cython_init('self._%s[i]' % name) }} + {% endif %} +-""", self=self, name=name, len=len) ++""", myself=self, name=name, len=len) + + def dealloc_chunk_data(self, name): + r""" +@@ -473,12 +473,12 @@ + """ + return je(""" + if self._{{ name }}: +-{% if self.needs_cython_init_clear() %} ++{% if myself.needs_cython_init_clear() %} + for i in range(self._n_{{ name }}): +- {{ self.cython_clear('self._%s[i]' % name) }} ++ {{ myself.cython_clear('self._%s[i]' % name) }} + {% endif %} + sage_free(self._{{ name }}) +-""", self=self, name=name) ++""", myself=self, name=name) + + class StorageTypeAssignable(StorageType): + r""" +@@ -671,8 +671,8 @@ + return je(""" + cdef object _list_{{ name }} + cdef int _n_{{ name }} +- cdef {{ self.cython_array_type() }} _{{ name }} +-""", self=self, name=name) ++ cdef {{ myself.cython_array_type() }} _{{ name }} ++""", myself=self, name=name) + + def alloc_chunk_data(self, name, len): + r""" +@@ -691,7 +691,7 @@ + self._n_{{ name }} = {{ len }} + self._list_{{ name }} = PyList_New(self._n_{{ name }}) + self._{{ name }} = (<PyListObject *>self._list_{{ name }}).ob_item +-""", self=self, name=name, len=len) ++""", myself=self, name=name, len=len) + + def dealloc_chunk_data(self, name): + r""" +@@ -901,8 +901,8 @@ + sage: ty_mpfr.cython_init('foo[i]') + u'mpfr_init2(foo[i], self.domain.prec())' + """ +- return je("mpfr_init2({{ loc }}, self.domain{{ self.id }}.prec())", +- self=self, loc=loc) ++ return je("mpfr_init2({{ loc }}, self.domain{{ myself.id }}.prec())", ++ myself=self, loc=loc) + + def cython_clear(self, loc): + r""" +@@ -928,8 +928,8 @@ + u'rn = self.domain(bar[j])\nmpfr_set(foo[i], rn.value, GMP_RNDN)' + """ + return je(""" +-rn{{ self.id }} = self.domain({{ py }}) +-mpfr_set({{ c }}, rn.value, GMP_RNDN)""", self=self, c=c, py=py) ++rn{{ myself.id }} = self.domain({{ py }}) ++mpfr_set({{ c }}, rn.value, GMP_RNDN)""", myself=self, c=c, py=py) + + ty_mpfr = StorageTypeMPFR() + +@@ -1184,9 +1184,9 @@ + <BLANKLINE> + """ + return je(""" +- count = args['{{ self.name }}'] +-{% print self.storage_type.alloc_chunk_data(self.name, 'count') %} +-""", self=self) ++ count = args['{{ myself.name }}'] ++{% print myself.storage_type.alloc_chunk_data(myself.name, 'count') %} ++""", myself=self) + + def dealloc_class_members(self): + r""" +@@ -1249,11 +1249,11 @@ + <BLANKLINE> + """ + return je(""" +- val = args['{{ self.name }}'] +-{% print self.storage_type.alloc_chunk_data(self.name, 'len(val)') %} ++ val = args['{{ myself.name }}'] ++{% print myself.storage_type.alloc_chunk_data(myself.name, 'len(val)') %} + for i in range(len(val)): +- {{ self.storage_type.assign_c_from_py('self._%s[i]' % self.name, 'val[i]') | i(12) }} +-""", self=self) ++ {{ myself.storage_type.assign_c_from_py('self._%s[i]' % myself.name, 'val[i]') | i(12) }} ++""", myself=self) + + class MemoryChunkArguments(MemoryChunkLonglivedArray): + r""" +@@ -1282,11 +1282,11 @@ + <BLANKLINE> + """ + return je(""" +-cdef {{ self.storage_type.c_ptr_type() }} c_args = self._args ++cdef {{ myself.storage_type.c_ptr_type() }} c_args = self._args + cdef int i + for i from 0 <= i < len(args): +- {{ self.storage_type.assign_c_from_py('self._args[i]', 'args[i]') | i(4) }} +-""", self=self) ++ {{ myself.storage_type.assign_c_from_py('self._args[i]', 'args[i]') | i(4) }} ++""", myself=self) + + def pass_argument(self): + r""" +@@ -1383,9 +1383,9 @@ + # XXX This is a lot slower than it needs to be, because + # we don't have a "cdef int i" in scope here. + return je(""" +-for i in range(self._n_{{ self.name }}): +- Py_CLEAR(self._{{ self.name }}[i]) +-""", self=self) ++for i in range(self._n_{{ myself.name }}): ++ Py_CLEAR(self._{{ myself.name }}[i]) ++""", myself=self) + + class MemoryChunkRRRetval(MemoryChunk): + r""" +@@ -1418,8 +1418,8 @@ + u' cdef RealNumber retval = (self.domain)()\n' + """ + return je(""" +- cdef RealNumber {{ self.name }} = (self.domain)() +-""", self=self) ++ cdef RealNumber {{ myself.name }} = (self.domain)() ++""", myself=self) + + def pass_argument(self): + r""" +@@ -1432,7 +1432,7 @@ + sage: mc.pass_argument() + u'&retval.value' + """ +- return je("""&{{ self.name }}.value""", self=self) ++ return je("""&{{ myself.name }}.value""", myself=self) + + def pass_call_c_argument(self): + r""" +@@ -1479,9 +1479,9 @@ + u" count = args['args']\n self._n_args = count\n" + """ + return je(""" +- count = args['{{ self.name }}'] ++ count = args['{{ myself.name }}'] + self._n_args = count +-""", self=self) ++""", myself=self) + + def setup_args(self): + r""" +@@ -1579,8 +1579,8 @@ + u' cdef object _domain\n' + """ + return je(""" +- cdef object _{{ self.name }} +-""", self=self) ++ cdef object _{{ myself.name }} ++""", myself=self) + + def init_class_members(self): + r""" +@@ -1595,8 +1595,8 @@ + u" self._domain = args['domain']\n" + """ + return je(""" +- self._{{ self.name }} = args['{{ self.name }}'] +-""", self=self) ++ self._{{ myself.name }} = args['{{ myself.name }}'] ++""", myself=self) + + def declare_parameter(self): + r""" +@@ -2967,22 +2967,22 @@ + /* Automatically generated by ext/gen_interpreters.py. Do not edit! */ + #include <Python.h> + {% print s.header %} +-{{ self.func_header() }} { ++{{ myself.func_header() }} { + while (1) { + switch (*code++) { +-""", s=s, self=self, i=indent_lines)) ++""", s=s, myself=self, i=indent_lines)) + for instr_desc in s.instr_descs: + self.gen_code(instr_desc, w) + w(je(""" + } + } +-{% if self.uses_error_handler %} ++{% if myself.uses_error_handler %} + error: + return {{ s.err_return }}; + {% endif %} + } + +-""", s=s, i=indent_lines, self=self)) ++""", s=s, i=indent_lines, myself=self)) + + def write_wrapper(self, write): + r""" +@@ -3059,7 +3059,7 @@ + from sage.ext.fast_callable cimport Wrapper + {% print s.pyx_header %} + +-cdef extern {{ self.func_header(cython=true) -}} ++cdef extern {{ myself.func_header(cython=true) -}} + {% if s.err_return != 'NULL' %} + except? {{ s.err_return -}} + {% endif %} +@@ -3146,7 +3146,7 @@ + {% endfor %} + ], + ipow_range={{ s.ipow_range }}) +-""", s=s, self=self, types=types, arg_ch=arg_ch, indent_lines=indent_lines, the_call=the_call, the_call_c=the_call_c, do_cleanup=do_cleanup)) ++""", s=s, myself=self, types=types, arg_ch=arg_ch, indent_lines=indent_lines, the_call=the_call, the_call_c=the_call_c, do_cleanup=do_cleanup)) + + def write_pxd(self, write): + r""" +@@ -3199,7 +3199,7 @@ + {{ arg_ch.storage_type.c_ptr_type() }} args, + {{ arg_ch.storage_type.c_ptr_type() }} result) except 0 + {% endif %} +-""", s=s, self=self, types=types, indent_lines=indent_lines, arg_ch=arg_ch)) ++""", s=s, myself=self, types=types, indent_lines=indent_lines, arg_ch=arg_ch)) + + def get_interpreter(self): + r""" +--- sage/server/notebook/template.py.orig 2010-05-22 16:11:11.629830799 +1200 ++++ sage/server/notebook/template.py 2010-05-22 16:09:19.431829934 +1200 +@@ -28,12 +28,12 @@ + # The full text of the GPL is available at: + # http://www.gnu.org/licenses/ + ############################################################################# +-import jinja ++import jinja2 + import sage.misc.misc + from sage.version import version + + TEMPLATE_PATH = sage.misc.misc.SAGE_ROOT + '/devel/sage/sage/server/notebook/templates' +-env = jinja.Environment(loader=jinja.FileSystemLoader(TEMPLATE_PATH)) ++env = jinja2.Environment(loader=jinja2.FileSystemLoader(TEMPLATE_PATH)) + + def contained_in(container): + """ +@@ -100,7 +100,7 @@ + """ + try: + tmpl = env.get_template(filename) +- except jinja.exceptions.TemplateNotFound: ++ except jinja2.exceptions.TemplateNotFound: + return template('template_error.html', template=filename) + context = dict(default_context) + context.update(user_context) diff --git a/sci-mathematics/sage/files/sage-4.4.4-extra-stdc99.patch b/sci-mathematics/sage/files/sage-4.4.4-extra-stdc99.patch new file mode 100644 index 0000000..a52c587 --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.4.4-extra-stdc99.patch @@ -0,0 +1,10 @@ +--- module_list.py.orig 2010-06-26 16:23:29.532595646 +1200 ++++ module_list.py 2010-06-26 16:49:44.259596047 +1200 +@@ -113,7 +113,6 @@ + + Extension('sage.algebras.quatalg.quaternion_algebra_element', + sources = ['sage/algebras/quatalg/quaternion_algebra_element.pyx'], +- extra_compile_args=["-std=c99"], + language='c++', + libraries = ["csage", "flint", "gmp", "gmpxx", "m", "stdc++", "ntl"], + include_dirs = [SAGE_ROOT+'/local/include/FLINT/'], diff --git a/sci-mathematics/sage/files/sage-4.5.1-fix-SAGE_LOCAL.patch b/sci-mathematics/sage/files/sage-4.5.1-fix-SAGE_LOCAL.patch new file mode 100644 index 0000000..8e55061 --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.5.1-fix-SAGE_LOCAL.patch @@ -0,0 +1,166 @@ +--- sage/misc/cython.py.orig 2010-06-28 16:37:01.000000000 +0000 ++++ sage/misc/cython.py 2010-07-31 15:47:39.704490103 +0000 +@@ -16,7 +16,7 @@ + + import os, sys + +-from misc import SPYX_TMP, SAGE_ROOT ++from misc import SPYX_TMP, SAGE_LOCAL, SAGE_ROOT + from sage.misc.misc import UNAME + + def cblas(): +@@ -43,10 +43,10 @@ + else: + return 'atlas' + +-include_dirs = ['%s/local/include/csage/'%SAGE_ROOT, +- '%s/local/include/'%SAGE_ROOT, \ +- '%s/local/include/python%s/'%(SAGE_ROOT, sys.version[:3]), \ +- '%s/local/lib/python%s/site-packages/numpy/core/include'%(SAGE_ROOT, sys.version[:3]), \ ++include_dirs = ['%s/include/csage/'%SAGE_LOCAL, ++ '%s/include/'%SAGE_LOCAL, \ ++ '%s/include/python%s/'%(SAGE_LOCAL, sys.version[:3]), \ ++ '%s/lib/python%s/site-packages/numpy/core/include'%(SAGE_LOCAL, sys.version[:3]), \ + '%s/devel/sage/sage/ext/'%SAGE_ROOT, \ + '%s/devel/sage/'%SAGE_ROOT, \ + '%s/devel/sage/sage/gsl/'%SAGE_ROOT] +@@ -160,9 +160,9 @@ + ..., + 'ntl', + 'csage'], +- ['.../local/include/csage/', +- '.../local/include/', +- '.../local/include/python2.6/', ++ ['.../include/csage/', ++ '.../include/', ++ '.../include/python2.6/', + '.../devel/sage/sage/ext/', + '.../devel/sage/', + '.../devel/sage/sage/gsl/'], +@@ -187,9 +187,9 @@ + + sage: inc + ['bar', +- '.../local/include/csage/', +- '.../local/include/', +- '.../local/include/python2.6/', ++ '.../include/csage/', ++ '.../include/', ++ '.../include/python2.6/', + '.../devel/sage/sage/ext/', + '.../devel/sage/', + '.../devel/sage/sage/gsl/'] +@@ -323,7 +323,7 @@ + sys.exit(1) + else: + SAGE_ROOT = os.environ['SAGE_ROOT'] +- SAGE_LOCAL = SAGE_ROOT + '/local/' ++ SAGE_LOCAL = os.environ['SAGE_LOCAL'] + + extra_link_args = ['-L' + SAGE_LOCAL + '/lib'] + extra_compile_args = ['-w','-O2'] +--- sage/misc/misc.py.orig 2010-07-12 08:12:30.000000000 +0000 ++++ sage/misc/misc.py 2010-07-31 15:12:14.163485912 +0000 +@@ -40,7 +40,7 @@ + from banner import version, banner + + SAGE_ROOT = os.environ["SAGE_ROOT"] +-SAGE_LOCAL = SAGE_ROOT + '/local/' ++SAGE_LOCAL = os.environ["SAGE_LOCAL"] + SAGE_DOC = os.environ["SAGE_DOC"] + HOSTNAME = socket.gethostname().replace('-','_').replace('/','_').replace('\\','_') + +@@ -123,7 +123,7 @@ + + + def delete_tmpfiles(): +- # !!!If you change this, see also SAGE_ROOT/local/bin/sage-doctest!!! ++ # !!!If you change this, see also SAGE_LOCAL/bin/sage-doctest!!! + import shutil + try: + if os.path.exists(SAGE_TMP): +@@ -1883,7 +1883,7 @@ + r""" + Return a string describing the current branch and that the library + is being loaded. This is called by the +- ``SAGE_ROOT/local/bin/sage-sage`` script. ++ ``SAGE_LOCAL/bin/sage-sage`` script. + + INPUT: + +--- sage/interfaces/maxima.py.orig 2010-07-31 14:57:21.214485610 +0000 ++++ sage/interfaces/maxima.py 2010-07-31 14:58:04.565485703 +0000 +@@ -461,7 +461,7 @@ + ##import sage.rings.all + import sage.rings.complex_number + +-from sage.misc.misc import verbose, DOT_SAGE, SAGE_ROOT ++from sage.misc.misc import verbose, DOT_SAGE, SAGE_LOCAL + + from sage.misc.multireplace import multiple_replace + +@@ -497,7 +497,7 @@ + # setting inchar and outchar.. + eval_using_file_cutoff = 256 + self.__eval_using_file_cutoff = eval_using_file_cutoff +- STARTUP = '%s/local/bin/sage-maxima.lisp'%SAGE_ROOT ++ STARTUP = '%s/bin/sage-maxima.lisp'%SAGE_LOCAL + + # We set maxima's configuration directory to $DOT_SAGE/maxima + # This avoids that sage's maxima inadvertently loads +--- sage/server/trac/trac.py.orig 2010-06-28 16:37:01.000000000 +0000 ++++ sage/server/trac/trac.py 2010-07-31 15:02:28.897486472 +0000 +@@ -120,7 +120,7 @@ + print " cd %s" % os.path.abspath(os.path.join(directory, 'conf')) + print " htdigest passwd %s <username>" % address + print "\nTo grant full admin permissions to a user:" +- print " %s %s permission add <username> TRAC_ADMIN" % (os.path.join(SAGE_ROOT, 'local/bin/trac-admin'), os.path.abspath(directory)) ++ print " %s %s permission add <username> TRAC_ADMIN" % (os.path.join(SAGE_LOCAL, 'bin/trac-admin'), os.path.abspath(directory)) + print "\nThen restart the trac server." + print "*" * 80 + open(passwd,'w').close() +--- sage/quadratic_forms/quadratic_form__automorphisms.py.orig 2010-07-31 15:07:42.812485694 +0000 ++++ sage/quadratic_forms/quadratic_form__automorphisms.py 2010-07-31 15:07:51.953487938 +0000 +@@ -8,7 +8,7 @@ + from sage.modules.free_module_element import vector + from sage.rings.arith import GCD + from sage.misc.sage_eval import sage_eval +-from sage.misc.misc import SAGE_ROOT ++from sage.misc.misc import SAGE_LOCAL + + import tempfile, os + from random import random +@@ -431,7 +431,7 @@ + #os.system("less " + F.name) + + ## Call the Souvigner automorphism code +- souvigner_auto_path = SAGE_ROOT + "/local/bin/Souvigner_AUTO" ## FIX THIS LATER!!! ++ souvigner_auto_path = SAGE_LOCAL + "/bin/Souvigner_AUTO" ## FIX THIS LATER!!! + G1 = tempfile.NamedTemporaryFile(prefix='tmp_auto_ouput', suffix=".txt") + #print "Output filename = ", G1.name + os.system(souvigner_auto_path + " '" + F.name + "' > '" + G1.name +"'") +--- sage/quadratic_forms/quadratic_form__equivalence_testing.py.orig 2010-07-31 15:06:50.524485472 +0000 ++++ sage/quadratic_forms/quadratic_form__equivalence_testing.py 2010-07-31 15:07:18.341485703 +0000 +@@ -1,3 +1,4 @@ ++ + from sage.matrix.constructor import Matrix + from sage.misc.mrange import mrange + from sage.rings.arith import hilbert_symbol, prime_divisors, is_prime, valuation, GCD, legendre_symbol +@@ -7,7 +8,7 @@ + from quadratic_form__genus import CS_genus_symbol_list + + +-from sage.misc.misc import SAGE_ROOT ++from sage.misc.misc import SAGE_LOCAL + + import tempfile, os + +@@ -65,7 +66,7 @@ + #os.system("less " + F.name) + + ## Call the Souvigner automorphism code +- souvigner_isom_path = SAGE_ROOT + "/local/bin/Souvigner_ISOM" ++ souvigner_isom_path = SAGE_LOCAL + "/bin/Souvigner_ISOM" + G1 = tempfile.NamedTemporaryFile(prefix='tmp_isom_ouput', suffix=".txt") + #print "Output filename = ", G1.name + #print "Executing the shell command: " + souvigner_isom_path + " '" + F.name + "' > '" + G1.name + "'" diff --git a/sci-mathematics/sage/files/sage-4.5.1-fix-qepcad-path.patch b/sci-mathematics/sage/files/sage-4.5.1-fix-qepcad-path.patch new file mode 100644 index 0000000..ff0c1ff --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.5.1-fix-qepcad-path.patch @@ -0,0 +1,39 @@ +--- sage/interfaces/qepcad.py.orig 2010-06-28 16:37:01.000000000 +0000 ++++ sage/interfaces/qepcad.py 2010-08-01 06:42:34.142563760 +0000 +@@ -558,7 +558,7 @@ + memcells_arg = '+N%s' % memcells + else: + memcells_arg = '' +- return "env qe=%s qepcad %s"%(sage.misc.misc.SAGE_LOCAL, memcells_arg) ++ return "env qe=%s qepcad %s"%(sage.misc.misc.DOT_SAGE, memcells_arg) + + _command_info_cache = None + +@@ -579,7 +579,7 @@ + + cache = {} + +- with open('%s/bin/qepcad.help'%sage.misc.misc.SAGE_LOCAL) as help: ++ with open('%s/share/qepcad/qepcad.help'%sage.misc.misc.SAGE_LOCAL) as help: + assert(help.readline().strip() == '@') + + while True: +@@ -636,15 +636,15 @@ + EXAMPLES: + sage: from sage.interfaces.qepcad import _rewrite_qepcadrc + sage: _rewrite_qepcadrc() +- sage: from sage.misc.misc import SAGE_LOCAL +- sage: open('%s/default.qepcadrc'%SAGE_LOCAL).readlines()[-1] ++ sage: from sage.misc.misc import DOT_SAGE ++ sage: open('%s/default.qepcadrc'%DOT_SAGE).readlines()[-1] + 'SINGULAR .../local//bin' + """ + global _rewrote_qepcadrc + if _rewrote_qepcadrc: return + + SL = sage.misc.misc.SAGE_LOCAL +- fn = '%s/default.qepcadrc'%SL ++ fn = '%s/default.qepcadrc'%sage.misc.misc.DOT_SAGE + text = \ + """# THIS FILE IS AUTOMATICALLY GENERATED -- DO NOT EDIT + diff --git a/sci-mathematics/sage/files/sage-4.5.2-ecls_ppc.patch b/sci-mathematics/sage/files/sage-4.5.2-ecls_ppc.patch new file mode 100644 index 0000000..5f173bb --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.5.2-ecls_ppc.patch @@ -0,0 +1,10 @@ +--- module_list.py.orig 2010-08-30 22:48:44.781370340 +1200 ++++ module_list.py 2010-08-30 22:54:58.297371782 +1200 +@@ -459,6 +459,7 @@ + sources = ["sage/libs/ecl.pyx"], + libraries = ["ecl"], + include_dirs = [SAGE_ROOT+'/local/include/ecl/'], ++ extra_compile_args=["-mno-altivec", "-mabi=no-altivec"], + depends = [SAGE_ROOT + '/local/include/ecl/ecl.h']), + + Extension('sage.libs.flint.flint', diff --git a/sci-mathematics/sage/files/sage-4.5.2-upgrade-singular.patch b/sci-mathematics/sage/files/sage-4.5.2-upgrade-singular.patch new file mode 100644 index 0000000..39b5b78 --- /dev/null +++ b/sci-mathematics/sage/files/sage-4.5.2-upgrade-singular.patch @@ -0,0 +1,476 @@ +# HG changeset patch +# User Martin Albrecht <malb@informatik.uni-bremen.de> +# Date 1267795375 0 +# Node ID e72bba40789546e1a6fb717567a680241a2e29b8 +# Parent 96e2020790df6a5f4d413e65b111f0ec6e73fc2a +adapted to new Singular 3-1-0-9 API + +diff -r 96e2020790df -r e72bba407895 sage/interfaces/singular.py +--- a/sage/interfaces/singular.py Mon Jun 28 23:27:14 2010 +0100 ++++ b/sage/interfaces/singular.py Fri Mar 05 13:22:55 2010 +0000 +@@ -9,7 +9,7 @@ + singular(...), x.[tab] includes all singular commands. + + - Martin Albrecht (2006-03-06): This patch adds the equality symbol to +- singular. Also fix problem in which" " as prompt means comparison ++ + will break all further communication with Singular. + + - Martin Albrecht (2006-03-13): added current_ring() and +@@ -1769,8 +1769,8 @@ + + sage: R = singular.ring(0, '(x,y,z)', 'dp') + sage: A = singular.matrix(2,2) +- sage: A.nrows._sage_doc_() +- "\nnrows\n-----\n\n`*Syntax:*'\n ... ++ sage: 'matrix_expression' in A.nrows._sage_doc_() ++ True + """ + if not nodes: + generate_docstring_dictionary() +@@ -1829,7 +1829,7 @@ + singular_docdir = os.environ["SAGE_LOCAL"]+"/share/singular/" + + new_node = re.compile("File: singular\.hlp, Node: ([^,]*),.*") +- new_lookup = re.compile("\* ([^:]*):*([^.]*)\.") ++ new_lookup = re.compile("\* ([^:]*):*([^.]*)\..*") + + L, in_node, curr_node = [], False, None + +@@ -1849,7 +1849,7 @@ + a,b = m.groups() + node_names[a] = b.strip() + +- if line == "Index\n": ++ if line == "6 Index\n": + in_node = False + + nodes[curr_node] = "".join(L) # last node +diff -r 96e2020790df -r e72bba407895 sage/libs/singular/function.pyx +--- a/sage/libs/singular/function.pyx Mon Jun 28 23:27:14 2010 +0100 ++++ b/sage/libs/singular/function.pyx Fri Mar 05 13:22:55 2010 +0000 +@@ -1205,7 +1205,7 @@ + self.call_handler = self.get_call_handler() + + cdef BaseCallHandler get_call_handler(self): +- cdef idhdl* singular_idhdl = ggetid(self._name, 0) ++ cdef idhdl* singular_idhdl = ggetid(self._name) + if singular_idhdl==NULL: + raise NameError("Function '%s' is not defined."%self._name) + if singular_idhdl.typ!=PROC_CMD: +@@ -1216,7 +1216,7 @@ + return res + + cdef bint function_exists(self): +- cdef idhdl* singular_idhdl = ggetid(self._name, 0) ++ cdef idhdl* singular_idhdl = ggetid(self._name) + return singular_idhdl!=NULL + + cdef class SingularKernelFunction(SingularFunction): +diff -r 96e2020790df -r e72bba407895 sage/libs/singular/option.pyx +--- a/sage/libs/singular/option.pyx Mon Jun 28 23:27:14 2010 +0100 ++++ b/sage/libs/singular/option.pyx Fri Mar 05 13:22:55 2010 +0000 +@@ -93,7 +93,7 @@ + from sage.libs.singular.decl cimport OPT_WEIGHTM, Sy_bit + + from sage.libs.singular.decl cimport V_SHOW_MEM, V_YACC, V_REDEFINE, V_READING, V_LOAD_LIB, V_DEBUG_LIB +-from sage.libs.singular.decl cimport V_LOAD_PROC, V_DEF_RES, V_DEBUG_MEM, V_SHOW_USE, V_IMAP, V_PROMPT ++from sage.libs.singular.decl cimport V_LOAD_PROC, V_DEF_RES, V_SHOW_USE, V_IMAP, V_PROMPT + from sage.libs.singular.decl cimport V_NSB, V_CONTENTSB, V_CANCELUNIT, V_DEG_STOP + + +@@ -314,7 +314,6 @@ + - ``debugLib`` - + - ``loadProc`` - + - ``defRes`` - +- - ``debugMem`` - + - ``usage`` - + - ``Imap`` - + - ``prompt`` - +@@ -350,7 +349,6 @@ + "debugLib": Sy_bit(V_DEBUG_LIB), + "loadProc": Sy_bit(V_LOAD_PROC), + "defRes": Sy_bit(V_DEF_RES), +- "debugMem": Sy_bit(V_DEBUG_MEM), + "usage": Sy_bit(V_SHOW_USE), + "Imap": Sy_bit(V_IMAP), + "prompt": Sy_bit(V_PROMPT), +diff -r 96e2020790df -r e72bba407895 sage/libs/singular/singular-cdefs.pxi +--- a/sage/libs/singular/singular-cdefs.pxi Mon Jun 28 23:27:14 2010 +0100 ++++ b/sage/libs/singular/singular-cdefs.pxi Fri Mar 05 13:22:55 2010 +0000 +@@ -75,7 +75,6 @@ + cdef int V_DEBUG_LIB + cdef int V_LOAD_PROC + cdef int V_DEF_RES +- cdef int V_DEBUG_MEM + cdef int V_SHOW_USE + cdef int V_IMAP + cdef int V_PROMPT +@@ -115,6 +114,8 @@ + napoly *n + int s + ++ ctypedef struct ring "ip_sring" ++ + ctypedef struct n_Procs_s: + + number* nDiv(number *, number *) +@@ -127,7 +128,7 @@ + number* (*nPar)(int i) + int (*nParDeg)(number* n) + int (*nSize)(number* n) +- int (*nInt)(number* n) ++ int (*n_Int)(number* n, ring *) + int (*nDivComp)(number* a,number* b) + number* (*nGetUnit)(number* a) + number* (*nExtGcd)(number* a, number* b, number* *s, number* *t) +@@ -212,7 +213,7 @@ + + # ideals + +- ctypedef struct ideal "ip_sideal": ++ ctypedef struct ideal "sip_sideal": + poly **m # gens array + long rank # rank of module, 1 for ideals + int nrows # always 1 +@@ -679,7 +680,7 @@ + + # return int representation of number n + +- int nInt(number *n) ++ int n_Int(number *n, ring *r) + + # general number division + +@@ -727,7 +728,7 @@ + + # get numerator + +- number *nlGetNom(number *n, ring *r) ++ number *nlGetNumerator(number *n, ring *r) + + # get denominator + +@@ -759,7 +760,7 @@ + + # algebraic number from int + +- number *naInit(int) ++ number *naInit(int, ring *r) + + # algebraic number destructor + +@@ -779,11 +780,7 @@ + + # get exponent of i-th variable + +- int napGetExp(napoly *, int i) +- +- # loop through algebraic number +- +- napoly *napIter(napoly *) ++ int napGetExpFrom(napoly *, int i, ring* r) + + # normalize a number + +@@ -802,7 +799,7 @@ + + + # init integer +- number *nrzInit(int i) ++ number *nrzInit(int i, ring *r) + + # init ZmodN from GMP + number *nrnMapGMP(number *v) +@@ -945,7 +942,6 @@ + cdef int V_DEBUG_LIB + cdef int V_LOAD_PROC + cdef int V_DEF_RES +- cdef int V_DEBUG_MEM + cdef int V_SHOW_USE + cdef int V_IMAP + cdef int V_PROMPT +@@ -962,7 +958,7 @@ + + int IsCmd(char *n, int tok) + +- idhdl* ggetid(char *n, bint local) ++ idhdl* ggetid(char *n) + + leftv * iiMake_proc(idhdl *pn, package *pack, leftv *sl) + +diff -r 96e2020790df -r e72bba407895 sage/libs/singular/singular.pyx +--- a/sage/libs/singular/singular.pyx Mon Jun 28 23:27:14 2010 +0100 ++++ b/sage/libs/singular/singular.pyx Fri Mar 05 13:22:55 2010 +0000 +@@ -29,12 +29,12 @@ + from sage.libs.singular.decl cimport SR_HDL, SR_INT, SR_TO_INT, singular_options + from sage.libs.singular.decl cimport On, Off, SW_USE_NTL, SW_USE_NTL_GCD_0, SW_USE_EZGCD, SW_USE_NTL_SORT, SW_USE_NTL_GCD_P + from sage.libs.singular.decl cimport napoly, lnumber, Sy_bit, OPT_REDSB, OPT_INTSTRATEGY, OPT_REDTAIL, OPT_REDTHROUGH +-from sage.libs.singular.decl cimport nlGetNom, nlGetDenom, nlDelete, nlInit2gmp ++from sage.libs.singular.decl cimport nlGetNumerator, nlGetDenom, nlDelete, nlInit2gmp + from sage.libs.singular.decl cimport naIsOne, naIsOne, naIsZero, naPar, naInit, naAdd, naMult, naDelete, naMap00 +-from sage.libs.singular.decl cimport napGetCoeff, napGetExp, napIter ++from sage.libs.singular.decl cimport napGetCoeff, napGetExpFrom, pNext + from sage.libs.singular.decl cimport nrzInit, nr2mMapZp, nrnMapGMP + from sage.libs.singular.decl cimport siInit +-from sage.libs.singular.decl cimport nInt, n_Init ++from sage.libs.singular.decl cimport n_Int, n_Init + from sage.libs.singular.decl cimport rChangeCurrRing + + from sage.rings.rational_field import RationalField +@@ -79,11 +79,11 @@ + ## structures aligned on 4 byte boundaries and therefor have last bit zero. + ## (The second bit is reserved as tag to allow extensions of this scheme.) + ## Using immediates as pointers and dereferencing them gives address errors. +- nom = nlGetNom(n, _ring) ++ nom = nlGetNumerator(n, _ring) + mpz_init(nom_z) + + if (SR_HDL(nom) & SR_INT): mpz_set_si(nom_z, SR_TO_INT(nom)) +- else: mpz_set(nom_z,&nom.z) ++ else: mpz_set(nom_z,nom.z) + + mpq_set_num(_z,nom_z) + nlDelete(&nom,_ring) +@@ -93,7 +93,7 @@ + mpz_init(denom_z) + + if (SR_HDL(denom) & SR_INT): mpz_set_si(denom_z, SR_TO_INT(denom)) +- else: mpz_set(denom_z,&denom.z) ++ else: mpz_set(denom_z,denom.z) + + mpq_set_den(_z, denom_z) + nlDelete(&denom,_ring) +@@ -154,13 +154,13 @@ + + while z: + c = cache.objectptr.initi(c,<long>napGetCoeff(z)) +- e = napGetExp(z,1) ++ e = napGetExpFrom(z,1, _ring) + if e == 0: + ret = cache.objectptr.add(ret, c, ret) + else: + a = ( e * cache.objectptr.sage_generator() ) % order + ret = cache.objectptr.axpy(ret, c, a, ret) +- z = napIter(z) ++ z = <napoly*>pNext(<poly*>z) + return (<FFgivE>cache._zero_element)._new_c(ret) + + cdef FFgf2eE si2sa_GFqNTLGF2E(number *n, ring *_ring, FiniteField_ntl_gf2e base): +@@ -191,9 +191,9 @@ + + while z: + c = <long>napGetCoeff(z) +- e = napGetExp(z,1) ++ e = napGetExpFrom(z,1, _ring) + ret += c * a**e +- z = napIter(z) ++ z = <napoly*>pNext(<poly*>z) + return ret + + cdef object si2sa_GFqPari(number *n, ring *_ring, object base): +@@ -224,12 +224,12 @@ + + while z: + c = <long>napGetCoeff(z) +- e = napGetExp(z,1) ++ e = napGetExpFrom(z,1, _ring) + if e == 0: + ret = ret + c + elif c != 0: + ret = ret + c * a**e +- z = napIter(z) ++ z = <napoly*>pNext(<poly*>z) + return base(ret) + + cdef object si2sa_NF(number *n, ring *_ring, object base): +@@ -262,12 +262,12 @@ + while z: + c = napGetCoeff(z) + coeff = si2sa_QQ(c, _ring) +- e = napGetExp(z,1) ++ e = napGetExpFrom(z,1, _ring) + if e == 0: + ret = ret + coeff + elif coeff != 0: + ret = ret + coeff * a**e +- z = napIter(z) ++ z = <napoly*>pNext(<poly*>z) + return base(ret) + + cdef inline object si2sa_ZZmod(number *n, ring *_ring, object base): +@@ -314,7 +314,7 @@ + ret.set_from_mpz(<__mpz_struct*>n) + return base(ret) + +- return base(_ring.cf.nInt(n)) ++ return base(_ring.cf.n_Int(n,_ring)) + + cdef number *sa2si_QQ(Rational r, ring *_ring): + """ +@@ -343,11 +343,11 @@ + + a = naPar(1) + +- apow1 = naInit(1) +- n1 = naInit(0) ++ apow1 = naInit(1, _ring) ++ n1 = naInit(0, _ring) + + while quo!=0: +- coeff = naInit(quo%b) ++ coeff = naInit(quo%b, _ring) + + if not naIsZero(coeff): + n2 = naAdd( naMult(coeff, apow1), n1) +@@ -376,12 +376,12 @@ + cdef GF2X_c rep = GF2E_rep(elem.x) + + if GF2X_deg(rep) >= 1: +- n1 = naInit(0) ++ n1 = naInit(0, _ring) + a = naPar(1) +- apow1 = naInit(1) ++ apow1 = naInit(1, _ring) + + for i from 0 <= i <= GF2X_deg(rep): +- coeff = naInit(GF2_conv_to_long(GF2X_coeff(rep,i))) ++ coeff = naInit(GF2_conv_to_long(GF2X_coeff(rep,i)), _ring) + + if not naIsZero(coeff): + n2 = naAdd( naMult(coeff, apow1), n1) +@@ -397,7 +397,7 @@ + naDelete(&apow1, _ring) + naDelete(&a, _ring) + else: +- n1 = naInit(GF2_conv_to_long(GF2X_coeff(rep,0))) ++ n1 = naInit(GF2_conv_to_long(GF2X_coeff(rep,0)), _ring) + + return n1 + +@@ -413,12 +413,12 @@ + + + if len(elem) > 1: +- n1 = naInit(0) ++ n1 = naInit(0, _ring) + a = naPar(1) +- apow1 = naInit(1) ++ apow1 = naInit(1, _ring) + + for i from 0 <= i < len(elem): +- coeff = naInit(int(elem[i])) ++ coeff = naInit(int(elem[i]), _ring) + + if not naIsZero(coeff): + n2 = naAdd( naMult(coeff, apow1), n1) +@@ -434,7 +434,7 @@ + naDelete(&apow1, _ring) + naDelete(&a, _ring) + else: +- n1 = naInit(int(elem)) ++ n1 = naInit(int(elem), _ring) + + return n1 + +@@ -448,9 +448,9 @@ + + elem = list(elem) + +- n1 = naInit(0) ++ n1 = naInit(0, _ring) + a = naPar(1) +- apow1 = naInit(1) ++ apow1 = naInit(1, _ring) + + for i from 0 <= i < len(elem): + nlCoeff = nlInit2gmp( mpq_numref((<Rational>elem[i]).value), mpq_denref((<Rational>elem[i]).value) ) +@@ -486,7 +486,7 @@ + sage: P(12345678901234567890) + 2 - 2 + 12345678901234567890 + """ +- cdef number *n = nrzInit(0) ++ cdef number *n = nrzInit(0, _ring) + mpz_set(<__mpz_struct*>n, d.value) + return <number*>n + +@@ -536,7 +536,7 @@ + + cdef object si2sa(number *n, ring *_ring, object base): + if PY_TYPE_CHECK(base, FiniteField_prime_modn): +- return base(nInt(n)) ++ return base(n_Int(n, _ring)) + + elif PY_TYPE_CHECK(base, RationalField): + return si2sa_QQ(n,_ring) +@@ -558,7 +558,7 @@ + + elif PY_TYPE_CHECK(base, IntegerModRing_generic): + if _ring.ringtype == 0: +- return base(nInt(n)) ++ return base(n_Int(n, _ring)) + return si2sa_ZZmod(n, _ring, base) + + else: +diff -r 96e2020790df -r e72bba407895 sage/rings/polynomial/multi_polynomial_libsingular.pyx +--- a/sage/rings/polynomial/multi_polynomial_libsingular.pyx Mon Jun 28 23:27:14 2010 +0100 ++++ b/sage/rings/polynomial/multi_polynomial_libsingular.pyx Fri Mar 05 13:22:55 2010 +0000 +@@ -3609,7 +3609,6 @@ + + delete(iv) + id_Delete(&I,_ring) +- p_Delete(&ptemp,_ring) + + return F + +@@ -3923,8 +3922,8 @@ + gcd = singclap_gcd(p_Copy(self._poly, _ring), p_Copy(_g._poly, _ring)) + prod = pp_Mult_qq(self._poly, _g._poly, _ring) + ret = singclap_pdivide(prod , gcd ) +- p_Delete(&prod, _ring) +- p_Delete(&gcd, _ring) ++ p_Delete(&prod, _ring) ++ p_Delete(&gcd, _ring) + if count >= 20: + _sig_off + return new_MP(self._parent, ret) +@@ -4333,7 +4332,7 @@ + cdef int count = singular_polynomial_length_bounded(self._poly,20)+singular_polynomial_length_bounded(other._poly,20) + if count >= 20: + _sig_on +- rt = singclap_resultant(self._poly, other._poly, (<MPolynomial_libsingular>variable)._poly ) ++ rt = singclap_resultant(self._poly, other._poly,(<MPolynomial_libsingular>variable)._poly ) + if count >= 20: + _sig_off + return new_MP(self._parent, rt) +diff -r 96e2020790df -r e72bba407895 sage/rings/polynomial/toy_buchberger.py +--- a/sage/rings/polynomial/toy_buchberger.py Mon Jun 28 23:27:14 2010 +0100 ++++ b/sage/rings/polynomial/toy_buchberger.py Fri Mar 05 13:22:55 2010 +0000 +@@ -426,8 +426,8 @@ + Q = set(Q) + while True: + Qbar = set(Q) +- for p in Qbar: +- p = Q.pop() ++ for p in sorted(Qbar): ++ Q.remove(p) + h = p.reduce(Q) + if h!=0: + Q.add(h) +diff -r 96e2020790df -r e72bba407895 sage/rings/polynomial/toy_d_basis.py +--- a/sage/rings/polynomial/toy_d_basis.py Mon Jun 28 23:27:14 2010 +0100 ++++ b/sage/rings/polynomial/toy_d_basis.py Fri Mar 05 13:22:55 2010 +0000 +@@ -280,11 +280,11 @@ + sage: G = [f, fx, fy] + sage: B = set(filter(lambda (x,y): x!=y, [(f1,f2) for f1 in G for f2 in G])) + sage: select(B) +- (3*x^2 + 7, x^3 - y^2 + 7*x - y + 1) ++ (-2*y - 1, 3*x^2 + 7) + """ + min_d = 2**20 + min_pair = 0,0 +- for fi,fj in P: ++ for fi,fj in sorted(P): + d = fi.parent().monomial_lcm(fi.lm(),fj.lm()).total_degree() + if d < min_d: + min_d = d diff --git a/sci-mathematics/sage/files/sage.svg.bz2 b/sci-mathematics/sage/files/sage.svg.bz2 Binary files differnew file mode 100644 index 0000000..ab7c684 --- /dev/null +++ b/sci-mathematics/sage/files/sage.svg.bz2 diff --git a/sci-mathematics/sage/files/trac-9221-matplotlib-update.patch b/sci-mathematics/sage/files/trac-9221-matplotlib-update.patch new file mode 100644 index 0000000..093eca9 --- /dev/null +++ b/sci-mathematics/sage/files/trac-9221-matplotlib-update.patch @@ -0,0 +1,61 @@ +# HG changeset patch +# User Jason Grout <jason.grout@drake.edu> +# Date 1281801383 25200 +# Node ID 64ca3b397c20b16c157fefd65c4c87a352e76a31 +# Parent 5b338f2e484f2065d3d30d47bc204d6e9ed13d12 +#9221: Update the way axes labels are calculated and number of colormaps for matplotlib 1.0 + +diff -r 5b338f2e484f -r 64ca3b397c20 sage/plot/colors.py +--- a/sage/plot/colors.py Thu Aug 05 03:35:44 2010 -0700 ++++ b/sage/plot/colors.py Sat Aug 14 08:56:23 2010 -0700 +@@ -1230,7 +1230,7 @@ + 0 + sage: maps.load_maps() + sage: len(maps.maps) +- 116 ++ 134 + """ + global cm + if not cm: +@@ -1274,7 +1274,7 @@ + sage: from sage.plot.colors import Colormaps + sage: maps = Colormaps() + sage: len(maps) +- 116 ++ 134 + """ + self.load_maps() + return len(self.maps) +diff -r 5b338f2e484f -r 64ca3b397c20 sage/plot/plot.py +--- a/sage/plot/plot.py Thu Aug 05 03:35:44 2010 -0700 ++++ b/sage/plot/plot.py Sat Aug 14 08:56:23 2010 -0700 +@@ -1861,25 +1861,25 @@ + # We set the label positions according to where we are + # drawing the axes. + if xaxis=='bottom': +- yaxis_labely=1 ++ yaxis_labely=subplot.get_ylim()[1] + yaxis_labeloffset=8 + yaxis_vert='bottom' + xaxis_labely=0 + xaxis_vert='baseline' + else: +- yaxis_labely=0 ++ yaxis_labely=subplot.get_ylim()[0] + yaxis_labeloffset=-8 + yaxis_vert='top' + xaxis_labely=1 + xaxis_vert='top' + + if yaxis=='left': +- xaxis_labelx=1 ++ xaxis_labelx=subplot.get_xlim()[1] + xaxis_labeloffset=8 + xaxis_horiz='left' + yaxis_labelx=0 + else: +- xaxis_labelx=0 ++ xaxis_labelx=subplot.get_xlim()[0] + xaxis_labeloffset=-8 + xaxis_horiz='right' + yaxis_labelx=1 diff --git a/sci-mathematics/sage/files/trac_9567-cycle_basis.patch b/sci-mathematics/sage/files/trac_9567-cycle_basis.patch new file mode 100644 index 0000000..1f24b5c --- /dev/null +++ b/sci-mathematics/sage/files/trac_9567-cycle_basis.patch @@ -0,0 +1,84 @@ +# HG changeset patch +# User Nathann Cohen <nathann.cohen@gmail.com> +# Date 1281583915 -28800 +# Node ID 3bab2e5f2a633d4a8dafc234f1f9ac1efcc97f44 +# Parent cbafe93273bb7d6009768655eab131653b6a8449 +trac 9567 -- Adds the method Graph.cycle_basis + +diff -r cbafe93273bb -r 3bab2e5f2a63 sage/graphs/generic_graph.py +--- a/sage/graphs/generic_graph.py Mon Aug 09 10:43:07 2010 -0600 ++++ b/sage/graphs/generic_graph.py Thu Aug 12 11:31:55 2010 +0800 +@@ -2122,6 +2122,64 @@ + M[index,index]+=1 + return abs(M.determinant()) + ++ def cycle_basis(self): ++ r""" ++ Returns a list of cycles which form a basis of the cycle space ++ of ``self``. ++ ++ A basis of cycles of a graph is a minimal collection of cycles ++ (considered as sets of edges) such that the edge set of any ++ cycle in the graph can be written as a `Z/2Z` sum of the ++ cycles in the basis. ++ ++ OUTPUT: ++ ++ A list of lists, each of them representing the vertices of a ++ cycle in a basis. ++ ++ ALGORITHM: ++ ++ Uses the NetworkX library. ++ ++ EXAMPLE: ++ ++ A cycle basis in Petersen's Graph :: ++ ++ sage: g = graphs.PetersenGraph() ++ sage: g.cycle_basis() ++ [[1, 2, 7, 5, 0], [8, 3, 2, 7, 5], [4, 3, 2, 7, 5, 0], [4, 9, 7, 5, 0], [8, 6, 9, 7, 5], [1, 6, 9, 7, 5, 0]] ++ ++ Checking the given cycles are algebraically free:: ++ ++ sage: g = graphs.RandomGNP(30,.4) ++ sage: basis = g.cycle_basis() ++ ++ Building the space of (directed) edges over `Z/2Z`. On the way, ++ building a dictionary associating an unique vector to each ++ undirected edge:: ++ ++ sage: m = g.size() ++ sage: edge_space = VectorSpace(FiniteField(2),m) ++ sage: edge_vector = dict( zip( g.edges(labels = False), edge_space.basis() ) ) ++ sage: for (u,v),vec in edge_vector.items(): ++ ... edge_vector[(v,u)] = vec ++ ++ Defining a lambda function associating a vector to the ++ vertices of a cycle:: ++ ++ sage: vertices_to_edges = lambda x : zip( x, x[1:] + [x[0]] ) ++ sage: cycle_to_vector = lambda x : sum( edge_vector[e] for e in vertices_to_edges(x) ) ++ ++ Finally checking the cycles are a free set:: ++ ++ sage: basis_as_vectors = map( cycle_to_vector, basis ) ++ sage: edge_space.span(basis_as_vectors).rank() == len(basis) ++ True ++ """ ++ ++ import networkx ++ return networkx.cycle_basis(self.networkx_graph(copy=False)) ++ + def minimum_outdegree_orientation(self, use_edge_labels=False, solver=None, verbose=0): + r""" + Returns a DiGraph which is an orientation with the smallest +@@ -2230,7 +2288,7 @@ + + O.delete_edges(edges) + +- return O ++ return O + + ### Planarity + diff --git a/sci-mathematics/sage/files/trac_9567-networkx-1.2.patch b/sci-mathematics/sage/files/trac_9567-networkx-1.2.patch new file mode 100644 index 0000000..51ba3fb --- /dev/null +++ b/sci-mathematics/sage/files/trac_9567-networkx-1.2.patch @@ -0,0 +1,329 @@ +# HG changeset patch +# User Ben Edwards <bedwards@cs.unm.edu> +# Date 1281372187 21600 +# Node ID 2f4945743e05e93fdbae5ec75777060bea4a6670 +# Parent 5b338f2e484f2065d3d30d47bc204d6e9ed13d12 +trac 9567: Updates to sage to interface with new version of networkx(1.2) + +This also includes several changes to the sage graph API to return +keyed dictionaries instead of lists, as this is preferred in many +situations. + +diff -r 5b338f2e484f -r 2f4945743e05 sage/graphs/generic_graph.py +--- a/sage/graphs/generic_graph.py Thu Aug 05 03:35:44 2010 -0700 ++++ b/sage/graphs/generic_graph.py Mon Aug 09 10:43:07 2010 -0600 +@@ -8478,8 +8478,8 @@ + + def cluster_triangles(self, nbunch=None, with_labels=False): + r""" +- Returns the number of triangles for nbunch of vertices as an +- ordered list. ++ Returns the number of triangles for nbunch of vertices as a ++ dictionary keyed by vertex. + + The clustering coefficient of a graph is the fraction of possible + triangles that are triangles, `c_i = triangles_i / +@@ -8494,9 +8494,6 @@ + - ``nbunch`` - The vertices to inspect. If + nbunch=None, returns data for all vertices in the graph + +- - ``with_labels`` - (boolean) default False +- returns list as above True returns dict keyed by vertex labels. +- + + REFERENCE: + +@@ -8506,15 +8503,15 @@ + + EXAMPLES:: + ++ sage: (graphs.FruchtGraph()).cluster_triangles().values() ++ [1, 1, 0, 1, 1, 1, 1, 1, 0, 1, 1, 0] + sage: (graphs.FruchtGraph()).cluster_triangles() +- [1, 1, 0, 1, 1, 1, 1, 1, 0, 1, 1, 0] +- sage: (graphs.FruchtGraph()).cluster_triangles(with_labels=True) + {0: 1, 1: 1, 2: 0, 3: 1, 4: 1, 5: 1, 6: 1, 7: 1, 8: 0, 9: 1, 10: 1, 11: 0} + sage: (graphs.FruchtGraph()).cluster_triangles(nbunch=[0,1,2]) +- [1, 1, 0] ++ {0: 1, 1: 1, 2: 0} + """ + import networkx +- return networkx.triangles(self.networkx_graph(copy=False), nbunch, with_labels) ++ return networkx.triangles(self.networkx_graph(copy=False), nbunch) + + def clustering_average(self): + r""" +@@ -8541,10 +8538,10 @@ + import networkx + return networkx.average_clustering(self.networkx_graph(copy=False)) + +- def clustering_coeff(self, nbunch=None, with_labels=False, weights=False): +- r""" +- Returns the clustering coefficient for each vertex in nbunch as an +- ordered list. ++ def clustering_coeff(self, nbunch=None, weights=False): ++ r""" ++ Returns the clustering coefficient for each vertex in nbunch as a ++ dictionary keyed by vertex. + + The clustering coefficient of a graph is the fraction of possible + triangles that are triangles, `c_i = triangles_i / +@@ -8558,9 +8555,6 @@ + - ``nbunch`` - the vertices to inspect (default + None returns data on all vertices in graph) + +- - ``with_labels`` - (boolean) default False +- returns list as above True returns dict keyed by vertex labels. +- + - ``weights`` - default is False. If both + with_labels and weights are True, then returns a clustering + coefficient dict and a dict of weights based on degree. Weights are +@@ -8576,19 +8570,19 @@ + + EXAMPLES:: + ++ sage: (graphs.FruchtGraph()).clustering_coeff().values() ++ [0.33333333333333331, 0.33333333333333331, 0.0, 0.33333333333333331, 0.33333333333333331, 0.33333333333333331, 0.33333333333333331, 0.33333333333333331, 0.0, 0.33333333333333331, 0.33333333333333331, 0.0] + sage: (graphs.FruchtGraph()).clustering_coeff() +- [0.33333333333333331, 0.33333333333333331, 0.0, 0.33333333333333331, 0.33333333333333331, 0.33333333333333331, 0.33333333333333331, 0.33333333333333331, 0.0, 0.33333333333333331, 0.33333333333333331, 0.0] +- sage: (graphs.FruchtGraph()).clustering_coeff(with_labels=True) + {0: 0.33333333333333331, 1: 0.33333333333333331, 2: 0.0, 3: 0.33333333333333331, 4: 0.33333333333333331, 5: 0.33333333333333331, 6: 0.33333333333333331, 7: 0.33333333333333331, 8: 0.0, 9: 0.33333333333333331, 10: 0.33333333333333331, 11: 0.0} +- sage: (graphs.FruchtGraph()).clustering_coeff(with_labels=True,weights=True) ++ sage: (graphs.FruchtGraph()).clustering_coeff(weights=True) + ({0: 0.33333333333333331, 1: 0.33333333333333331, 2: 0.0, 3: 0.33333333333333331, 4: 0.33333333333333331, 5: 0.33333333333333331, 6: 0.33333333333333331, 7: 0.33333333333333331, 8: 0.0, 9: 0.33333333333333331, 10: 0.33333333333333331, 11: 0.0}, {0: 0.083333333333333329, 1: 0.083333333333333329, 2: 0.083333333333333329, 3: 0.083333333333333329, 4: 0.083333333333333329, 5: 0.083333333333333329, 6: 0.083333333333333329, 7: 0.083333333333333329, 8: 0.083333333333333329, 9: 0.083333333333333329, 10: 0.083333333333333329, 11: 0.083333333333333329}) + sage: (graphs.FruchtGraph()).clustering_coeff(nbunch=[0,1,2]) +- [0.33333333333333331, 0.33333333333333331, 0.0] +- sage: (graphs.FruchtGraph()).clustering_coeff(nbunch=[0,1,2],with_labels=True,weights=True) ++ {0: 0.33333333333333331, 1: 0.33333333333333331, 2: 0.0} ++ sage: (graphs.FruchtGraph()).clustering_coeff(nbunch=[0,1,2],weights=True) + ({0: 0.33333333333333331, 1: 0.33333333333333331, 2: 0.0}, {0: 0.33333333333333331, 1: 0.33333333333333331, 2: 0.33333333333333331}) + """ + import networkx +- return networkx.clustering(self.networkx_graph(copy=False), nbunch, with_labels, weights) ++ return networkx.clustering(self.networkx_graph(copy=False), nbunch, weights) + + def cluster_transitivity(self): + r""" +diff -r 5b338f2e484f -r 2f4945743e05 sage/graphs/graph.py +--- a/sage/graphs/graph.py Thu Aug 05 03:35:44 2010 -0700 ++++ b/sage/graphs/graph.py Mon Aug 09 10:43:07 2010 -0600 +@@ -2531,7 +2531,7 @@ + sage: (graphs.ChvatalGraph()).centrality_betweenness() + {0: 0.069696969696969688, 1: 0.069696969696969688, 2: 0.060606060606060601, 3: 0.060606060606060601, 4: 0.069696969696969688, 5: 0.069696969696969688, 6: 0.060606060606060601, 7: 0.060606060606060601, 8: 0.060606060606060601, 9: 0.060606060606060601, 10: 0.060606060606060601, 11: 0.060606060606060601} + sage: (graphs.ChvatalGraph()).centrality_betweenness(normalized=False) +- {0: 7.6666666666666661, 1: 7.6666666666666661, 2: 6.6666666666666661, 3: 6.6666666666666661, 4: 7.6666666666666661, 5: 7.6666666666666661, 6: 6.6666666666666661, 7: 6.6666666666666661, 8: 6.6666666666666661, 9: 6.6666666666666661, 10: 6.6666666666666661, 11: 6.6666666666666661} ++ {0: 3.833333333333333, 1: 3.833333333333333, 2: 3.333333333333333, 3: 3.333333333333333, 4: 3.833333333333333, 5: 3.833333333333333, 6: 3.333333333333333, 7: 3.333333333333333, 8: 3.333333333333333, 9: 3.333333333333333, 10: 3.333333333333333, 11: 3.333333333333333} + sage: D = DiGraph({0:[1,2,3], 1:[2], 3:[0,1]}) + sage: D.show(figsize=[2,2]) + sage: D = D.to_undirected() +@@ -2573,7 +2573,10 @@ + 1.0 + """ + import networkx +- return networkx.degree_centrality(self.networkx_graph(copy=False), v) ++ if v==None: ++ return networkx.degree_centrality(self.networkx_graph(copy=False)) ++ else: ++ return networkx.degree_centrality(self.networkx_graph(copy=False))[v] + + def centrality_closeness(self, v=None): + r""" +@@ -2870,10 +2873,11 @@ + else: + raise NotImplementedError("Only 'networkx' and 'cliquer' are supported.") + +- def cliques_number_of(self, vertices=None, cliques=None, with_labels=False): ++ def cliques_number_of(self, vertices=None, cliques=None): + """ +- Returns a list of the number of maximal cliques containing each +- vertex. (Returns a single value if only one input vertex). ++ Returns a dictionary of the number of maximal cliques containing each ++ vertex, keyed by vertex. (Returns a single value if ++ only one input vertex). + + .. NOTE:: + +@@ -2885,9 +2889,6 @@ + - ``vertices`` - the vertices to inspect (default is + entire graph) + +- - ``with_labels`` - (boolean) default False returns +- list as above True returns a dictionary keyed by vertex labels +- + - ``cliques`` - list of cliques (if already + computed) + +@@ -2896,14 +2897,14 @@ + + sage: C = Graph('DJ{') + sage: C.cliques_number_of() +- [1, 1, 1, 1, 2] ++ {0: 1, 1: 1, 2: 1, 3: 1, 4: 2} + sage: E = C.cliques_maximal() + sage: E + [[4, 0], [4, 1, 2, 3]] + sage: C.cliques_number_of(cliques=E) +- [1, 1, 1, 1, 2] ++ {0: 1, 1: 1, 2: 1, 3: 1, 4: 2} + sage: F = graphs.Grid2dGraph(2,3) +- sage: X = F.cliques_number_of(with_labels=True) ++ sage: X = F.cliques_number_of() + sage: for v in sorted(X.iterkeys()): + ... print v, X[v] + (0, 0) 2 +@@ -2913,14 +2914,14 @@ + (1, 1) 3 + (1, 2) 2 + sage: F.cliques_number_of(vertices=[(0, 1), (1, 2)]) +- [3, 2] ++ {(0, 1): 3, (1, 2): 2} + sage: G = Graph({0:[1,2,3], 1:[2], 3:[0,1]}) + sage: G.show(figsize=[2,2]) + sage: G.cliques_number_of() +- [2, 2, 1, 1] ++ {0: 2, 1: 2, 2: 1, 3: 1} + """ + import networkx +- return networkx.number_of_cliques(self.networkx_graph(copy=False), vertices, cliques, with_labels) ++ return networkx.number_of_cliques(self.networkx_graph(copy=False), vertices, cliques) + + def cliques_get_max_clique_graph(self, name=''): + """ +@@ -2996,12 +2997,13 @@ + """ + from sage.graphs.cliquer import max_clique + return max_clique(self.complement()) +- ++ + def cliques_vertex_clique_number(self, algorithm="cliquer", vertices=None, +- with_labels=False, cliques=None): +- r""" +- Returns a list of sizes of the largest maximal cliques containing +- each vertex. (Returns a single value if only one input vertex). ++ cliques=None): ++ """ ++ Returns a dictionary of sizes of the largest maximal cliques containing ++ each vertex, keyed by vertex. (Returns a single value if only one ++ input vertex). + + .. NOTE:: + +@@ -3020,10 +3022,6 @@ + - ``vertices`` - the vertices to inspect (default is entire graph). + Ignored unless ``algorithm=='networkx'``. + +- - ``with_labels`` - (boolean) default False returns list as above +- True returns a dictionary keyed by vertex labels. Ignored unless +- ``algorithm=='networkx'``. +- + - ``cliques`` - list of cliques (if already computed). Ignored unless + ``algorithm=='networkx'``. + +@@ -3031,14 +3029,14 @@ + + sage: C = Graph('DJ{') + sage: C.cliques_vertex_clique_number() +- [2, 4, 4, 4, 4] ++ {0: 2, 1: 4, 2: 4, 3: 4, 4: 4} + sage: E = C.cliques_maximal() + sage: E + [[4, 0], [4, 1, 2, 3]] + sage: C.cliques_vertex_clique_number(cliques=E,algorithm="networkx") +- [2, 4, 4, 4, 4] ++ {0: 2, 1: 4, 2: 4, 3: 4, 4: 4} + sage: F = graphs.Grid2dGraph(2,3) +- sage: X = F.cliques_vertex_clique_number(with_labels=True,algorithm="networkx") ++ sage: X = F.cliques_vertex_clique_number(algorithm="networkx") + sage: for v in sorted(X.iterkeys()): + ... print v, X[v] + (0, 0) 2 +@@ -3048,11 +3046,11 @@ + (1, 1) 2 + (1, 2) 2 + sage: F.cliques_vertex_clique_number(vertices=[(0, 1), (1, 2)]) +- [2, 2] ++ {(0, 1): 2, (1, 2): 2} + sage: G = Graph({0:[1,2,3], 1:[2], 3:[0,1]}) + sage: G.show(figsize=[2,2]) + sage: G.cliques_vertex_clique_number() +- [3, 3, 3, 3] ++ {0: 3, 1: 3, 2: 3, 3: 3} + + """ + +@@ -3060,21 +3058,22 @@ + from sage.graphs.cliquer import clique_number + if vertices==None: + vertices=self +- value=[] ++ value={} + for v in vertices: +- value.append(1+clique_number(self.subgraph(self.neighbors(v)))) ++ value[v] = 1+clique_number(self.subgraph(self.neighbors(v))) + self.subgraph(self.neighbors(v)).plot() + return value + elif algorithm=="networkx": + import networkx +- return networkx.node_clique_number(self.networkx_graph(copy=False), vertices, with_labels, cliques) ++ return networkx.node_clique_number(self.networkx_graph(copy=False),vertices, cliques) + else: + raise NotImplementedError("Only 'networkx' and 'cliquer' are supported.") + +- def cliques_containing_vertex(self, vertices=None, cliques=None, with_labels=False): ++ def cliques_containing_vertex(self, vertices=None, cliques=None): + """ +- Returns the cliques containing each vertex, represented as a list +- of lists. (Returns a single list if only one input vertex). ++ Returns the cliques containing each vertex, represented as a dictionary ++ of lists of lists, keyed by vertex. (Returns a single list if only one ++ input vertex). + + .. NOTE:: + +@@ -3086,9 +3085,6 @@ + - ``vertices`` - the vertices to inspect (default is + entire graph) + +- - ``with_labels`` - (boolean) default False returns +- list as above True returns a dictionary keyed by vertex labels +- + - ``cliques`` - list of cliques (if already + computed) + +@@ -3096,14 +3092,14 @@ + + sage: C = Graph('DJ{') + sage: C.cliques_containing_vertex() +- [[[4, 0]], [[4, 1, 2, 3]], [[4, 1, 2, 3]], [[4, 1, 2, 3]], [[4, 0], [4, 1, 2, 3]]] ++ {0: [[4, 0]], 1: [[4, 1, 2, 3]], 2: [[4, 1, 2, 3]], 3: [[4, 1, 2, 3]], 4: [[4, 0], [4, 1, 2, 3]]} + sage: E = C.cliques_maximal() + sage: E + [[4, 0], [4, 1, 2, 3]] + sage: C.cliques_containing_vertex(cliques=E) +- [[[4, 0]], [[4, 1, 2, 3]], [[4, 1, 2, 3]], [[4, 1, 2, 3]], [[4, 0], [4, 1, 2, 3]]] ++ {0: [[4, 0]], 1: [[4, 1, 2, 3]], 2: [[4, 1, 2, 3]], 3: [[4, 1, 2, 3]], 4: [[4, 0], [4, 1, 2, 3]]} + sage: F = graphs.Grid2dGraph(2,3) +- sage: X = F.cliques_containing_vertex(with_labels=True) ++ sage: X = F.cliques_containing_vertex() + sage: for v in sorted(X.iterkeys()): + ... print v, X[v] + (0, 0) [[(0, 1), (0, 0)], [(1, 0), (0, 0)]] +@@ -3113,15 +3109,15 @@ + (1, 1) [[(0, 1), (1, 1)], [(1, 2), (1, 1)], [(1, 0), (1, 1)]] + (1, 2) [[(1, 2), (0, 2)], [(1, 2), (1, 1)]] + sage: F.cliques_containing_vertex(vertices=[(0, 1), (1, 2)]) +- [[[(0, 1), (0, 0)], [(0, 1), (0, 2)], [(0, 1), (1, 1)]], [[(1, 2), (0, 2)], [(1, 2), (1, 1)]]] ++ {(0, 1): [[(0, 1), (0, 0)], [(0, 1), (0, 2)], [(0, 1), (1, 1)]], (1, 2): [[(1, 2), (0, 2)], [(1, 2), (1, 1)]]} + sage: G = Graph({0:[1,2,3], 1:[2], 3:[0,1]}) + sage: G.show(figsize=[2,2]) + sage: G.cliques_containing_vertex() +- [[[0, 1, 2], [0, 1, 3]], [[0, 1, 2], [0, 1, 3]], [[0, 1, 2]], [[0, 1, 3]]] ++ {0: [[0, 1, 2], [0, 1, 3]], 1: [[0, 1, 2], [0, 1, 3]], 2: [[0, 1, 2]], 3: [[0, 1, 3]]} + + """ + import networkx +- return networkx.cliques_containing_node(self.networkx_graph(copy=False), vertices, cliques, with_labels) ++ return networkx.cliques_containing_node(self.networkx_graph(copy=False),vertices, cliques) + + def clique_complex(self): + """ diff --git a/sci-mathematics/sage/files/trac_9808_numpy_doctest_change.patch b/sci-mathematics/sage/files/trac_9808_numpy_doctest_change.patch new file mode 100644 index 0000000..ced1ac7 --- /dev/null +++ b/sci-mathematics/sage/files/trac_9808_numpy_doctest_change.patch @@ -0,0 +1,31 @@ +# HG changeset patch +# User maldun <domors@gmx.net> +# Date 1283560011 -7200 +# Node ID 257df6b32dae1ed68f2a0d68f2e93332eef2393f +# Parent 5b338f2e484f2065d3d30d47bc204d6e9ed13d12 +Trac 9808: Updatet 2 outdated doctests in doc/en/faq/faq-usage.rst +and sage/matrix/matrix1.pyx + +diff -r 5b338f2e484f -r 257df6b32dae doc/en/faq/faq-usage.rst +--- a/doc/en/faq/faq-usage.rst Thu Aug 05 03:35:44 2010 -0700 ++++ b/doc/en/faq/faq-usage.rst Sat Sep 04 02:26:51 2010 +0200 +@@ -339,7 +339,6 @@ + sage: RealNumber = float; Integer = int + sage: from scipy import stats + sage: stats.ttest_ind(list([1,2,3,4,5]),list([2,3,4,5,.6])) +- doctest...DeprecationWarning... + (0.076752955645333687, 0.94070490247380478) + sage: stats.uniform(0,15).ppf([0.5,0.7]) + array([ 7.5, 10.5]) +diff -r 5b338f2e484f -r 257df6b32dae sage/matrix/matrix1.pyx +--- a/sage/matrix/matrix1.pyx Thu Aug 05 03:35:44 2010 -0700 ++++ b/sage/matrix/matrix1.pyx Sat Sep 04 02:26:51 2010 +0200 +@@ -446,7 +446,7 @@ + + sage: import numpy + sage: sorted(numpy.typecodes.items()) +- [('All', '?bhilqpBHILQPfdgFDGSUVO'), ('AllFloat', 'fdgFDG'), ('AllInteger', 'bBhHiIlLqQpP'), ('Character', 'c'), ('Complex', 'FDG'), ('Float', 'fdg'), ('Integer', 'bhilqp'), ('UnsignedInteger', 'BHILQP')] ++ [('All', '?bhilqpBHILQPfdgFDGSUVOMm'), ('AllFloat', 'fdgFDG'), ('AllInteger', 'bBhHiIlLqQpP'), ('Character', 'c'), ('Complex', 'FDG'), ('Datetime', 'Mm'), ('Float', 'fdg'), ('Integer', 'bhilqp'), ('UnsignedInteger', 'BHILQP')] + + Alternatively, numpy automatically calls this function (via + the magic :meth:`__array__` method) to convert Sage matrices diff --git a/sci-mathematics/sage/sage-4.5.3.ebuild b/sci-mathematics/sage/sage-4.5.3.ebuild new file mode 100644 index 0000000..195b3c6 --- /dev/null +++ b/sci-mathematics/sage/sage-4.5.3.ebuild @@ -0,0 +1,338 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI="3" + +PYTHON_DEPEND="2:2.6" +PYTHON_USE_WITH="sqlite" + +inherit distutils eutils flag-o-matic python + +MY_P="sage-${PV}" + +DESCRIPTION="Math software for algebra, geometry, number theory, cryptography and numerical computation" +HOMEPAGE="http://www.sagemath.org" +SRC_URI="mirror://sage/spkg/standard/${MY_P}.spkg -> ${P}.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="examples latex testsuite X" + +CDEPEND="|| ( =dev-lang/python-2.6.4-r99 + =dev-lang/python-2.6.5-r99 ) + dev-libs/gmp + >=dev-libs/mpfr-2.4.2 + >=dev-libs/ntl-5.5.2 + >=dev-lisp/ecls-10.2.1[-unicode] + >=dev-python/numpy-1.4.1[lapack] + >=sci-mathematics/eclib-20100711 + >=sci-mathematics/ecm-6.2.1 + >=sci-libs/flint-1.5.0[ntl] + >=sci-libs/fplll-3.0.12 + =sci-libs/givaro-3.2* + >=sci-libs/gsl-1.14 + >=sci-libs/iml-1.0.1 + >=sci-libs/libcliquer-1.2_p6 + >=sci-libs/linbox-1.1.6[ntl,sage] + >=sci-libs/m4ri-20100701 + >=sci-libs/mpfi-1.4 + >=sci-libs/pynac-0.2.0_p5 + >=sci-libs/symmetrica-2.0 + >=sci-libs/zn_poly-0.9 + >=sci-mathematics/glpk-4.43[gmp] + >=sci-mathematics/lcalc-1.23[pari] + >=sci-mathematics/pari-2.3.5[data,gmp] + >=sci-mathematics/polybori-0.6.5-r2[sage] + >=sci-mathematics/ratpoints-2.1.3 + ~sci-mathematics/sage-baselayout-${PV}[testsuite=] + ~sci-mathematics/sage-clib-${PV} + ~sci-mathematics/singular-3.1.1.4[libsingular] + media-libs/gd + media-libs/libpng + >=sys-libs/readline-6.0 + sys-libs/zlib + virtual/cblas" + +DEPEND="${CDEPEND} + =dev-python/cython-0.12*" + +RDEPEND="${CDEPEND} + >=dev-lang/R-2.10.1[lapack,readline] + >=dev-python/cvxopt-0.9 + >=dev-python/gdmodule-0.56 + >=dev-python/ipython-0.9.1 + >=dev-python/jinja-2.1.1 + >=dev-python/matplotlib-1.0.0 + ~dev-python/mpmath-0.15 + >=dev-python/networkx-1.2 + ~dev-python/pexpect-2.0 + >=dev-python/pycrypto-2.1.0 + >=dev-python/python-gnutls-1.1.4 + >=dev-python/rpy-2.0.6 + >=dev-python/sphinx-0.6.3 + dev-python/sqlalchemy + ~dev-python/sympy-0.6.6 + >=media-gfx/tachyon-0.98 + >=net-zope/zodb-3.7.0 + >=sci-libs/cddlib-094f + =sci-libs/scipy-0.8* + >=sci-mathematics/flintqs-20070817_p4 + >=sci-mathematics/gap-4.4.12 + >=sci-mathematics/gap-guava-3.4 + >=sci-mathematics/genus2reduction-0.3 + >=sci-mathematics/gfan-0.4 + >=sci-mathematics/cu2-20060223 + >=sci-mathematics/cubex-20060128 + >=sci-mathematics/dikcube-20070912_p12 + ~sci-mathematics/maxima-5.20.1[ecl] + >=sci-mathematics/mcube-20051209 + >=sci-mathematics/optimal-20040603 + >=sci-mathematics/palp-1.1 + ~sci-mathematics/sage-data-conway_polynomials-0.2 + ~sci-mathematics/sage-data-elliptic_curves-0.1 + ~sci-mathematics/sage-data-graphs-20070722_p1 + ~sci-mathematics/sage-data-polytopes_db-20100210 + >=sci-mathematics/sage-doc-${PV} + ~sci-mathematics/sage-extcode-${PV} + ~sci-mathematics/sage-notebook-0.8.2 + >=sci-mathematics/sympow-1.018.1_p8 + examples? ( ~sci-mathematics/sage-examples-${PV} ) + testsuite? ( + ~sci-mathematics/sage-doc-${PV}[html] + ~sci-mathematics/sage-examples-${PV} + ) + latex? ( ~dev-tex/sage-latex-2.2.5 )" + +# TODO: check if use flags are necessary + +src_prepare() { + # ATLAS independence + local cblaslibs=\'$(pkg-config --libs-only-l cblas | sed \ + -e 's/^-l//' \ + -e "s/ -l/\',\'/g" \ + -e 's/,.pthread//g' \ + -e "s: ::")\' + + ############################################################################ + # Fixes to Sage's build system + ############################################################################ + + # Fix startup issue and python-2.6.5 problem + append-flags -fno-strict-aliasing -DNDEBUG + + # fix build file to make it compile without other Sage components + epatch "${FILESDIR}"/${PN}-4.3.4-site-packages.patch + + # add pari and gmp to everything. + sed -i "s:\['stdc++', 'ntl'\]:\['stdc++', 'ntl','pari','gmp'\]:g" setup.py \ + || die "failed to add pari and gmp everywhere" + + # remove annoying std=c99 from a c++ file. + epatch "${FILESDIR}"/${PN}-4.4.4-extra-stdc99.patch + + # Fix ecls bug for ppc see #308909. This has to be done before sed is applied to module_list.py + if use ppc ; then + epatch "${FILESDIR}"/${P}-ecls_ppc.patch + fi + + # upgrade to numpy-1.4.1/scipy-0.8 + epatch "${FILESDIR}"/trac_9808_numpy_doctest_change.patch + + # use already installed csage + rm -rf c_lib || die "failed to remove c library directory" + + # patch SAGE_LOCAL + sed -i "s:SAGE_LOCAL = SAGE_ROOT + '/local/':SAGE_LOCAL = os.environ['SAGE_LOCAL']:g" \ + module_list.py setup.py || die "failed to patch SAGE_LOCAL" + + # fix include paths + sed -i \ + -e "s:SAGE_ROOT[[:space:]]*+[[:space:]]*\([\'\"]\)/local/include/\([^\1]*\)\1:SAGE_LOCAL + \1/include/\2\1:g" \ + -e "s:sage/c_lib/include/:${EPREFIX}/usr/include/csage/:g" \ + module_list.py || die "failed to patch paths for libraries" + + sed -i "s:'%s/sage/sage/ext'%SAGE_DEVEL:'sage/ext':g" \ + setup.py || die "failed to patch extensions path" + + # fix png library name + sed -i "s:png12:$(libpng-config --libs | cut -dl -f2):g" \ + module_list.py || die "failed to patch png library name" + + # fix numpy path + sed -i "s:SAGE_ROOT+'/local/lib/python/site-packages/numpy/core/include':'$(python_get_sitedir)/numpy/core/include':g" \ + module_list.py || die "failed to patch path for numpy include directory" + + # fix cython path + sed -i "s:SAGE_LOCAL + '/lib/python/site-packages/Cython/Includes/':'$(python_get_sitedir)/Cython/Includes/':g" \ + setup.py || die "failed to patch path for cython include directory" + + # fix lcalc path + sed -i "s:include/lcalc/:include/Lfunction/:g" module_list.py \ + || die "failed to patch path for lcalc include directory" + + # rebuild in place + sed -i "s:SAGE_DEVEL + 'sage/sage/ext/interpreters':'sage/ext/interpreters':g" \ + setup.py || die "failed to patch interpreters path" + + # fix include paths and CBLAS/ATLAS + sed -i \ + -e "s:'%s/include/csage'%SAGE_LOCAL:'${EPREFIX}/usr/include/csage':g" \ + -e "s:'%s/sage/sage/ext'%SAGE_DEVEL:'sage/ext':g" \ + setup.py || die "failed to patch include paths" + + sed -i \ + -e "s:BLAS, BLAS2:${cblaslibs}:g" \ + -e "s:,BLAS:,${cblaslibs}:g" \ + module_list.py || die "failed to patch module_list.py for ATLAS" + + # enable glpk + sed -i "s:is_package_installed('glpk'):True:g" module_list.py \ + || die "failed to enable glpk" + + # TODO: why does Sage fail with linbox commentator ? + + ############################################################################ + # Fixes to Sage itself + ############################################################################ + + # gmp-5 compatibility - works with gmp-4.3 as well + sed -i "s:__GMP_BITS_PER_MP_LIMB:GMP_LIMB_BITS:g" sage/rings/integer.pyx \ + || die "failed to patch for gmp-5" + + # run maxima with ecl + sed -i \ + -e "s:maxima-noreadline:maxima -l ecl:g" \ + -e "s:maxima --very-quiet:maxima -l ecl --very-quiet:g" \ + sage/interfaces/maxima.py || die "failed to patch maxima commands" + + # Uses singular internal copy of the factory header + sed -i "s:factory.h:singular/factory.h:" sage/libs/singular/singular-cdefs.pxi \ + || die "failed to patch factory header""" + + # upgrade to matplotlib-1.0.0 as it is now marked stable + epatch "${FILESDIR}"/trac-9221-matplotlib-update.patch + + # use delaunay from matplotlib (see ticket #6946) + epatch "${FILESDIR}"/${PN}-4.3.3-delaunay-from-matplotlib.patch + + # use arpack from scipy (see also scipy ticket #231) + epatch "${FILESDIR}"/${PN}-4.3.3-arpack-from-scipy.patch + + # Fix portage QA warning. Potentially prevent some leaking. + epatch "${FILESDIR}"/${PN}-4.4.2-flint.patch + + sed -i "s:cblas(), atlas():${cblaslibs}:" sage/misc/cython.py \ + || die "failed to patch cython.py for ATLAS" + + # patch for optional glpk + sed -i "s:\.\./\.\./local/include/glpk\.h:${EPREFIX}/usr/include/glpk.h:g" \ + sage/numerical/mip_glpk.pxd || die "failed to patch mip_glpk.pxd" + + sed -i "s:\.\./\.\./\.\./\.\./devel/sage/sage:..:g" \ + sage/numerical/mip_glpk.pyx || die "failed to patch mip_glpk.pyx" + + # Ticket #5155: + + # save gap_stamp to directory where sage is able to write + sed -i "s:GAP_STAMP = '%s/local/bin/gap_stamp'%SAGE_ROOT:GAP_STAMP = '%s/gap_stamp'%DOT_SAGE:g" \ + sage/interfaces/gap.py || die "patch to patch gap interface" + + # fix qepcad paths + epatch "${FILESDIR}"/${PN}-4.5.1-fix-qepcad-path.patch + + # fix save path (for testing only) + sed -i "s:save(w,'test'):save(w,tmp_filename('test')):g" \ + sage/combinat/words/morphism.py || die "failed to patch path for save" + + # Ticket #8898: + + # make sure line endings are unix ones so as not to confuse python-2.6.5 + edos2unix sage/libs/mpmath/ext_impl.pxd + edos2unix sage/libs/mpmath/ext_main.pyx + edos2unix sage/libs/mpmath/ext_main.pxd + edos2unix sage/libs/mpmath/ext_libmp.pyx + + # replace SAGE_ROOT/local with SAGE_LOCAL + epatch "${FILESDIR}"/${PN}-4.5.1-fix-SAGE_LOCAL.patch + + # patch path for saving sessions + sed -i "s:save_session('tmp_f', :save_session(tmp_f, :g" \ + sage/misc/session.pyx || die "failed to patch session path" + + # patch lie library path + sed -i "s:open(SAGE_LOCAL + 'lib/lie/INFO\.0'):open(SAGE_LOCAL + '/share/lie/INFO.0'):g" \ + sage/interfaces/lie.py || die "failed to patch lie library path" + + # Patch to singular info file shipped with sage-doc + sed -i "s:os.environ\[\"SAGE_LOCAL\"\]+\"/share/singular/\":os.environ\[\"SAGE_DOC\"\]+\"/\":g" \ + sage/interfaces/singular.py || die "failed to patch singular.hlp path" + + # fix test paths + sed -i \ + -e "s:'my_animation.gif':tmp_filename('my_animation')+'.gif':g" \ + -e "s:'wave.gif':tmp_filename('wave')+'.gif':g" \ + -e "s:'wave0.sobj':tmp_filename('wave0')+'.sobj':g" \ + -e "s:'wave1.sobj':tmp_filename('wave1')+'.sobj':g" \ + sage/plot/animate.py + + # do not forget to run distutils + distutils_src_prepare +} + +src_configure() { + export SAGE_LOCAL="${EPREFIX}"/usr + export SAGE_ROOT="${EPREFIX}"/usr/share/sage + export SAGE_VERSION=${PV} + + export MAKE=${MAKEOPTS} + + # files are not built unless they are touched + find sage -name "*pyx" -exec touch '{}' \; \ + || die "failed to touch *pyx files" +} + +src_install() { + distutils_src_install + + if use testsuite ; then + # install testable sources and sources needed for testing + find sage ! \( -name "*.py" -o -name "*.pyx" -o -name "*.pxd" -o \ + -name "*.pxi" \) -type f -delete \ + || die "failed to remove non-testable sources" + + insinto "${SAGE_ROOT}"/devel/sage-main + doins -r sage || die + fi +} + +pkg_postinst() { + einfo "If you use Sage's browser interface ('Sage Notebook') and experience" + einfo "an 'Internal Server Error' you should append the following line to" + einfo "your ~/.bashrc (replace firefox with your favorite browser and note" + einfo "that it your case it WILL NOT WORK with xdg-open):" + einfo "" + einfo " export SAGE_BROWSER=/usr/bin/firefox" + einfo "" + einfo "Sage comes with the 'Standard' set of Sage Packages, i.e. those" + einfo "listed at: http://sagemath.org/packages/standard/ which are now" + einfo "already installed." + einfo "There are also some packages of the 'Optional' set (which consists" + einfo "of the these: http://sagemath.org/packages/optional/) available" + einfo "which may be installed with portage as usual." + + if use testsuite ; then + + einfo "You have installed Sage's testsuite. In order to test Sage run the" + einfo "following command in a directory where Sage may write to:" + einfo "" + einfo " sage -testall" + einfo "" + einfo "Note that testing Sage may take more than 4 hours. If you want to" + einfo "compare your results look at the list of known failures:" + einfo "" + einfo " http://github.com/cschwan/sage-on-gentoo/wiki/Known-test-failures" + + fi +} diff --git a/sys-fs/afpfs-ng/Manifest b/sys-fs/afpfs-ng/Manifest new file mode 100644 index 0000000..7be15d6 --- /dev/null +++ b/sys-fs/afpfs-ng/Manifest @@ -0,0 +1,2 @@ +DIST afpfs-ng-0.8.1.tar.bz2 344014 RMD160 39d3e50ce38df188a7c90448b20f7e428027dc43 SHA1 3686d4d752052ea8e98841fcae748cb469991dbb SHA256 688560de1cde57ab8d9e0ef7dc6436dbf0267fe8884f9014e50ff92b297b01a8 +EBUILD afpfs-ng-0.8.1.ebuild 794 RMD160 741e1be06a7924c2b3715e9100a0933f5adb1085 SHA1 98bcfebac26286812d3bd7581409e9424e169e9c SHA256 d1568e289aae6133c5092c5dc633d3adc57b7cb98693d5306e0b922bfd861963 diff --git a/sys-fs/afpfs-ng/afpfs-ng-0.8.1.ebuild b/sys-fs/afpfs-ng/afpfs-ng-0.8.1.ebuild new file mode 100644 index 0000000..5905989 --- /dev/null +++ b/sys-fs/afpfs-ng/afpfs-ng-0.8.1.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit eutils autotools + +DESCRIPTION="An Apple Filing Protocol client implemented in FUSE" +HOMEPAGE="http://sourceforge.net/projects/afpfs-ng/" +SRC_URI="mirror://sourceforge/afpfs-ng/${P}.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-libs/libgcrypt + sys-libs/readline + dev-libs/gmp + sys-fs/fuse" + +src_unpack() { + unpack "${A}" + cd ${S} + eautoreconf +} + +src_install() { + dobin cmdline/.libs/afpcmd cmdline/.libs/afpgetstatus fuse/.libs/afpfsd fuse/.libs/mount_afp + dolib lib/.libs/libafpclient.{so.0.0.0,a} + dodoc COPYING AUTHORS ChangeLog docs/README docs/performance docs/FEATURES.txt docs/REPORTING-BUGS.txt + doman fuse/*.1 cmdline/*.1 +} |
